Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy5g0186 ATGGCCCAACTCTCTTTCCTCTGTTTTCTCTGTTTCCTCCTCTTCCTCGCCGGCCCCGCCGCATCTCAGCAGCTCTACTTCCCCGGATTCCACGACGCCGCCGCCGCCGCCGCCAACTTAACTCTCACTGACATCGCCAAGATCGAGTCCAACGGAATCTTAAAGCTCACAAACGACACCAGTCGATTACAGGGCCATGCCTTTTACACTTCCCCTGTTCGATTCAAAAACTCCTCCGACGGCAAAGCTTTTTCCTTCTCCACCGCTTTTGTCCTCGCCGTCGTCCCCGAGTACCCGACCCTCGGCGGCCATGGCCTCGCCTTCACCATTGCACCCTCCAAAAACCTCCGTGGACTTCCCAGTCAGTATTTAGGCCTTCTCAATGCCACCGATGTCGGAAACTTCTCGAACCATCTCTTCGCCGTCGAGTTCGACACAGTTCAAGATTTCGAGTTCGGCGACATCAACGACAACCACGTCGGAATCAATCTCAACAATATGGTCTCTAATGACTCCATCACCGCTTCCTATTTCGTCGACGACGGACCCATCAGACAGAATCTAACCCTAAAAAGTGGGAGGCCGGTTCAAGCTTGGATCGATTACGATTCCTCTGTAAATTCCCTCACGGTGGCGCTTTCTCCGTTCTCAACCAAACCCAAGAAGCCGATTCTTTCGTATAAAGTAGATCTCTCTCCGATTCTTCACGAGTTTATGTACGTTGGGTTCTCGGCCTCGACGGGGCTTCTTGCGAGTTCTCACTATGTATTGGGATGGAGTTTCAGTATGAATGGACCAGCCCAATCTCTGGATCTTTCTTCTTTACCTTCTGTTCCAGGTCCGAAGAAGAAGCACACTGGTTTCACAATTGGGGTTTCTGTTGCGGCGGTTTTGATTGTGGTAATTGCGATTTGTGTTGCTGTGTTGATCATTTGGAAGATCAAAAACGCTGACATAATCGAGGCCTGGGAGCTCGAAATCGGCCCTCATCGGTACTCTTACAAGGAGCTCAAGCAAGCGACTAAGCGATTCAGGGACAGAGAGCTTCTGGGGCGCGGTGGATTCGGGAAGGTTTACAAAGGGACTTTGCCGAATTCGAAAACCCTAGTGGCTGTTAAGCGAATTTCTCATGAATCGAAACAGGGTTTGAGGGAATTCGTGTCGGAAATCGCTAGCATTGGTCGGCTCCGTCACCGGAACCTGGTTCAGTTACTGGGTTGGTGTCGCCGCCGTGGCGATCTGCTTCTTGTTTATGATTTTATGGCCAATGGGAGCTTGGATAACTACATTTTCGACGAGCCCGATGTGATTTTGAGCTGGGATCAGAGGTTTCGGATCATTAAGGGCGTCGCCTCCGGCCTTCTGTACTTGCACGAAGGCTACGAACAGGTAGTCATTCATAGAGATGTGAAGGCTAGCAATGTTCTGCTCGACAGCGAGATGAACGGAAAGCTCGGCGATTTCGGGCTCGCCCGGCTATACGAACACGGGGCGAATCCGAGCACGACTCGGGTCGTCGGAACACTGGGATATCTGGCGCCGGAGCTACCCAGAACAGGGAAAGCCACCACCAGCTCAGATGTGTATGCCTTCGGCGCACTGCTGCTGGAAGTGGTCTGCGGGCGGCGGCCGATCGACCCGAAAGCGTCGTCGGAGGAGCTGGTGCTGGTGGATTGGGTGTGGGAGAATTACAGGGAAGGGAAACTGCTGGAAGTAATGGATCCAAAATTGAAAGGGGATTTCAATGTGGCTGAGGCAGTGATGATTCTGAAATTGGGGTTGTTCTGTTCGAACGACTCGGCGGCGGCGCGGCCGAGTATGAGGCAGGTGGTGCGGTTTCTGGACGGCGAAATCGGAGTTCCCGACGAGATTTCGGCGCCGAAAGTGGTGGAAGGAGGGAAGAACGGCGAAGGGTTCGATGATTTTGTGAATTCGTTTGCTTCTTCTTCGTTTAACAAGTTCAGCACGAATTCGTCGACTGGAAATAGGGATATGGATATGAGTTTTGCTTCATTTTCGACTTCTCCTCTTTCGCTTCTCAATGGCAGAGACTGA 2055 52.12 MAQLSFLCFLCFLLFLAGPAASQQLYFPGFHDAAAAAANLTLTDIAKIESNGILKLTNDTSRLQGHAFYTSPVRFKNSSDGKAFSFSTAFVLAVVPEYPTLGGHGLAFTIAPSKNLRGLPSQYLGLLNATDVGNFSNHLFAVEFDTVQDFEFGDINDNHVGINLNNMVSNDSITASYFVDDGPIRQNLTLKSGRPVQAWIDYDSSVNSLTVALSPFSTKPKKPILSYKVDLSPILHEFMYVGFSASTGLLASSHYVLGWSFSMNGPAQSLDLSSLPSVPGPKKKHTGFTIGVSVAAVLIVVIAICVAVLIIWKIKNADIIEAWELEIGPHRYSYKELKQATKRFRDRELLGRGGFGKVYKGTLPNSKTLVAVKRISHESKQGLREFVSEIASIGRLRHRNLVQLLGWCRRRGDLLLVYDFMANGSLDNYIFDEPDVILSWDQRFRIIKGVASGLLYLHEGYEQVVIHRDVKASNVLLDSEMNGKLGDFGLARLYEHGANPSTTRVVGTLGYLAPELPRTGKATTSSDVYAFGALLLEVVCGRRPIDPKASSEELVLVDWVWENYREGKLLEVMDPKLKGDFNVAEAVMILKLGLFCSNDSAAARPSMRQVVRFLDGEIGVPDEISAPKVVEGGKNGEGFDDFVNSFASSSFNKFSTNSSTGNRDMDMSFASFSTSPLSLLNGRD 684
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 1847371 1849899 + Maker00033110 Lcy5g0186 632001
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy5g0186 684 ProSitePatterns Serine/Threonine protein kinases active-site signature. 465 477 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Lcy5g0186 684 Pfam Legume lectin domain 24 275 IPR001220 GO:0030246(InterPro)
Lcy5g0186 684 FunFam L-type lectin-domain containing receptor kinase S.1 329 420 - -
Lcy5g0186 684 SMART serkin_6 344 614 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy5g0186 684 CDD lectin_legume_LecRK_Arcelin_ConA 27 265 IPR001220 GO:0030246(InterPro)
Lcy5g0186 684 CDD STKc_IRAK 350 616 - -
Lcy5g0186 684 ProSitePatterns Protein kinases ATP-binding region signature. 350 373 IPR017441 GO:0005524(InterPro)
Lcy5g0186 684 ProSiteProfiles Protein kinase domain profile. 344 618 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy5g0186 684 Gene3D - 24 273 - -
Lcy5g0186 684 Gene3D Phosphorylase Kinase; domain 1 329 420 - -
Lcy5g0186 684 SUPERFAMILY Protein kinase-like (PK-like) 326 628 IPR011009 -
Lcy5g0186 684 Pfam Protein kinase domain 346 552 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy5g0186 684 PANTHER - 41 636 IPR050528 GO:0005886(PANTHER)
Lcy5g0186 684 Gene3D Transferase(Phosphotransferase) domain 1 421 628 - -
Lcy5g0186 684 FunFam L-type lectin-domain containing receptor kinase S.4 421 627 - -
Lcy5g0186 684 SUPERFAMILY Concanavalin A-like lectins/glucanases 23 283 IPR013320 -
Lcy5g0186 684 FunFam L-type lectin-domain containing receptor kinase S.4 21 269 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy1g1469 Lcy-Chr1:14279036 Lcy5g0186 Lcy-Chr5:1847371 2.25E-278 dispersed
Lcy1g1470 Lcy-Chr1:14287953 Lcy5g0186 Lcy-Chr5:1847371 2.39E-276 dispersed
Lcy5g0186 Lcy-Chr5:1847371 Lcy5g0188 Lcy-Chr5:1863840 1.58E-233 dispersed
Lcy5g0186 Lcy-Chr5:1847371 Lcy5g0187 Lcy-Chr5:1859285 4.18E-235 tandem
Lcy2g0122 Lcy-Chr2:919007 Lcy5g0186 Lcy-Chr5:1847371 7.95E-159 transposed
Lcy5g0276 Lcy-Chr5:2586126 Lcy5g0186 Lcy-Chr5:1847371 4.19E-130 transposed
Lcy13g0459 Lcy-Chr13:5480749 Lcy5g0186 Lcy-Chr5:1847371 1.78E-71 transposed
Lcy1g1468 Lcy-Chr1:14238402 Lcy5g0186 Lcy-Chr5:1847371 1.06E-210 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
65910 None None None None Lcy PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy5g0186 - - - 0.0