Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy5g0188 ATGTTCTTCAAGCTCGTAATTGTAGTGTCTCTAATTATTACCTCAGTTTCAGCTGCTTCTGAAGGTCTCAGCTTCATCTTCAATGGCTTCCAGCCTGCAAATCTATCACTCGAAGGCATGGCCATTGTTACCTCCAATGGCTTCTTGAAACTGACCAACGAGACCAGGCAAAGATTTGGCCATGCCTTTTATCCTAATCCTATAAATTTTTTCGACTCCTCTTCTAGCGTTTCCTCTTTCTCAACCACTTTCGTCTTTGCCATTATTTCTGAATTCCCAACTCTAAGTGGCCATGGAATTGTCTTCGTGGTGGCTCCGATGAAAGTTTTCCCTGGAGCTCTTCCAAGCCAGTACCTTGGCCTTTTCAATCAGAAAAACATTGGTAACGCAGCCAACCATGTATTTGCTGTAGAGCTCGACACGATTCAGAGTACAGAGTTTAACGATATCAATGACAATCATGTTGGCATAGATATAAATGGGTTGATCTCTGAGAAAGCTGAACCTGCTGGATTTTATTCCGACAACGATGGGAAATTCAGAAACTTGAGCCTTCATAGTGGCCAACAAATGCAGGTTTGGATTGAATATGATGGCTCCAACAAAGTACTCGATGTCACTCTGGCTCCAATTCATATTCCCAAACCCAAAAAGCCACTTTTGTCTCTCTCCCGAAACCTTTCATCTGTCATGAAAAACTCCATGTACGTTGGCTTTTCAGCCTCTACAGGCTCAGTTCCAACTTCTCATTATGTTTCAGGTTGGAGCTTCAGTATAAATGGAGAGGCTCAATGTCTTGACCCTTCCCTGCTTCCAAAGTTTCCTGGGAGAAAAGGAAGATCCAAGCTTTTATCGATTGGGTTGCCTTCGGTTTCTGCAGGGATTGTTTTATGGGTGGTTTTAGGTATTCTGATCAGAAGGAAGCAGAAGTTTGCCGAGTTACTGGAAGACTGGGAACTTGAATATGGGCCTCACAGGTTCAAATACAAAGATTTATACGTTGCTACAAATGGATTTAAAGAGAGAGAGCTTCTGGGTTCTGGCGGATTTGGACGAGTCTACAAAGGGATATTACCAAATTCTAAACTTGAAATCGCTGTCAAAAGAGTCTCTCATGAATCAAGGCAGGGAATGAAGGAATTCGTGGCTGAGATTGTTAGTCTTGGGAGGCTTCGCCACAGAAACCTCGTACAATTATTAGGCTATTGCAGACGCAAAGGAGAGCTGCTTTTAGTGTATGATTGCATGGCCAATGGAAGTTTGGATAGGTATCTGTTTGGCCAACCAGATCACACTCTTAATTGGAACCAGAGATTTGGAATCATAAAAGGTGTGGCCTCGGGGCTGCTTTACCTGCATGAAGAATGGGAACAAGTTGTGATTCACAGAGATGTCAAAGCCAGCAACGTCTTGCTAGACCGTGAGTTCAATGGAAGATTAGGAGATTTTGGGTTGGCGAGATTGTATGACCATGGAACAGATCCTCAAACTACCCACATTGTCGGAACACTCGGATATTTGGCTCCAGAGCTCACAAGAACAGGCCGGTCAACAATCCTTACAGACGTGTTTTCTTTTGGGGCATTCCTGCTGGAGGTTGCCACTGGAAGGAGGCCGATAGAGCTACGGGGAATGACAGAGGATGTAATATTGGTGGATTTGGTGTTTTCATGTTGGGCAAGGGGAGCCATTCTAGAGGCCAAGGATCCAAACCTGGGAACAGAGTATGTAGCAGAGGAGATGGAGATGGTGCTGAAACTAGGATTGTTGTGTACTCAATTCAACCCAGTGGCCAGGCCGAGCATGCGCCAAATTGTGCAGTACTTGGAAGGTGACGCTCCCATGCCGGAGATAACTCCCATCGATACCTCAAGCAGCAGGTATGAAGGTTTTGATGGCATTGCCATGTGTTGCTCTTCTTCCCTCGAGAGGGCTTTTGATCATTCTTCTGAAACCCAGTCTCTCCTATCTGCTGGCCGTTGA 1983 44.98 MFFKLVIVVSLIITSVSAASEGLSFIFNGFQPANLSLEGMAIVTSNGFLKLTNETRQRFGHAFYPNPINFFDSSSSVSSFSTTFVFAIISEFPTLSGHGIVFVVAPMKVFPGALPSQYLGLFNQKNIGNAANHVFAVELDTIQSTEFNDINDNHVGIDINGLISEKAEPAGFYSDNDGKFRNLSLHSGQQMQVWIEYDGSNKVLDVTLAPIHIPKPKKPLLSLSRNLSSVMKNSMYVGFSASTGSVPTSHYVSGWSFSINGEAQCLDPSLLPKFPGRKGRSKLLSIGLPSVSAGIVLWVVLGILIRRKQKFAELLEDWELEYGPHRFKYKDLYVATNGFKERELLGSGGFGRVYKGILPNSKLEIAVKRVSHESRQGMKEFVAEIVSLGRLRHRNLVQLLGYCRRKGELLLVYDCMANGSLDRYLFGQPDHTLNWNQRFGIIKGVASGLLYLHEEWEQVVIHRDVKASNVLLDREFNGRLGDFGLARLYDHGTDPQTTHIVGTLGYLAPELTRTGRSTILTDVFSFGAFLLEVATGRRPIELRGMTEDVILVDLVFSCWARGAILEAKDPNLGTEYVAEEMEMVLKLGLLCTQFNPVARPSMRQIVQYLEGDAPMPEITPIDTSSSRYEGFDGIAMCCSSSLERAFDHSSETQSLLSAGR 660
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 1863840 1865822 + Maker00033319 Lcy5g0188 632003
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy5g0188 660 FunFam Lectin-domain containing receptor kinase A4.3 324 415 - -
Lcy5g0188 660 CDD STKc_IRAK 345 611 - -
Lcy5g0188 660 SUPERFAMILY Protein kinase-like (PK-like) 320 624 IPR011009 -
Lcy5g0188 660 Gene3D Phosphorylase Kinase; domain 1 324 414 - -
Lcy5g0188 660 FunFam L-type lectin-domain containing receptor kinase S.4 416 622 - -
Lcy5g0188 660 SUPERFAMILY Concanavalin A-like lectins/glucanases 23 276 IPR013320 -
Lcy5g0188 660 SMART serkin_6 339 609 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy5g0188 660 CDD lectin_legume_LecRK_Arcelin_ConA 23 261 IPR001220 GO:0030246(InterPro)
Lcy5g0188 660 ProSitePatterns Serine/Threonine protein kinases active-site signature. 460 472 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Lcy5g0188 660 PANTHER - 28 616 IPR050528 GO:0002229(PANTHER)|GO:0004675(PANTHER)|GO:0005886(PANTHER)|GO:0042742(PANTHER)
Lcy5g0188 660 ProSiteProfiles Protein kinase domain profile. 339 618 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy5g0188 660 Gene3D Transferase(Phosphotransferase) domain 1 416 628 - -
Lcy5g0188 660 Gene3D - 21 267 - -
Lcy5g0188 660 Pfam Legume lectin domain 23 270 IPR001220 GO:0030246(InterPro)
Lcy5g0188 660 Pfam Protein kinase domain 340 607 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy5g0188 660 ProSitePatterns Protein kinases ATP-binding region signature. 345 368 IPR017441 GO:0005524(InterPro)
Lcy5g0188 660 FunFam L-type lectin-domain containing receptor kinase V.9 22 264 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy4g0652 Lcy-Chr4:7823931 Lcy5g0188 Lcy-Chr5:1863840 1.47E-152 dispersed
Lcy5g0186 Lcy-Chr5:1847371 Lcy5g0188 Lcy-Chr5:1863840 1.58E-233 dispersed
Lcy5g0188 Lcy-Chr5:1863840 Lcy9g0283 Lcy-Chr9:7252774 6.21E-175 dispersed
Lcy5g0187 Lcy-Chr5:1859285 Lcy5g0188 Lcy-Chr5:1863840 0 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
65912 None None None None Lcy PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy5g0188 - - - 0.0