Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy5g0199 ATGGATCCACTCCTTAGACGACAGGCTGGTTCCACGAATGGAATTCTTATAGGTAATGGTTCTTTTGCGGTTCAATCACAAGAGAACGCTCTTGGCAGTTCTAGATTTCAGAATACCATTTTGAGTCATAACTTTCAAGAATTTGATTGCCTTCCCCCTGATCCATCACCGAGTAACATAGCCTCAAGCTCCAGTATTATCACCTCATCTTCTAATGATGCGAGTCATGAGGAGGATTATCTGGAAGATTGCGATTTTTCTGATGCTGTTTTGAGATTCATAAATCAGATTCTCATGGAAGAAGATATGGAGGACAAGACTTGCATGCTTCAAGATTCTTTGGATCTTCAAGCCGCCGAGAAACAATTCTACGAGGTCCTTGGAAAACAGTATCCTCCTTCCTCAGAACCAAGTAGATCTCTGGCCAATCAATACAGCGATAGCTTCAATGAAGAACTTTGTGGAGATAGTAGTAATTACCTGAATGGTTACAATAATACTTCTTATTATGGTGATGATAATCATTTTCAACATCAGAGTGAAGATGTATTTCAAATCAGAAGCACTTTGGGTGATACCATTTCTCCATCATCTAATAGCTCCTCAAATAGTATAATTAGCGGGGCTGATGGGTGGGTGGACTTCTCGAATAATACAATTCGAGTCCCGGAGCCTAATAACAGAAGTCAATCTATTTGGCAGTTTCAAAAAGGGTTTGAAGAGGCAAGCAAATTTTTACCTGGTGGAAACAACCTGTGTCTTGATTTTGAGGCAAACGGGTCAGCAACTCAGGGTTCGGACGAGGGAACAAGCCAGATATATGTGAAGGCAGCAAGAAAGGATCAGAGGGATGTTTTGTCGGTTGAATCACGAGGAAGAAAGAATCCTCATGATGAGAATGGAGATTTGGAAGAAGAGAGAAGCAGCAAGCAAGCAGCTGTATTTACAGAATCGACCTTGCGATCTAAGATGTTTGATATTGTGTTGCTTTGTAGTGCAGGGGAGGGGCATGATCGGTTAGTTTCATTTCGACAGGAATTACAGAATGCCAAACTCAAAAGCATGCTGCAGACTGGGCAACTTAAAGAGTCTAGTGGTGGGAGGGGTCGTCGGAAGAAGCAAAGTGGGAAAAAGGAGGTTGTGGATTTGAGAACTCTTCTAATTAGCTGTGCTCAAGCCGTTGCAGCTGATGACCATAGGAATGCCAATGAGCTTCTAAAGCAGGTCAGGCAACATGCTTCTCCTTTTGGGGATGGAAATCAGAGGTTGGCTAGTTGTTTTGCTGATGGTCTGGAGGCACGCTTGGCAGGCACTGGTAGCCAGATTTACAAAGGTCTAATTAATAAAAGAACATCTGCTGCTGATGTATTGAAAGCCTACCACCTGTATCTTGCTGCATGCCCATTTAGGAAGATTTCTAATTTTACTTCAAACAGGACTATAATGATTGCTGCAGAGAATGCAACTAAGCTTCATGTCATAGATTTTGGTATTCTTTACGGTTTCCAGTGGCCTACTTTAATTCAGAGGCTGTCATGGAGAAAAGGAGGACCTCCAAAGCTTCGGATTACTGGAATAGAATTTCCCCAGCCTGGCTTCCGTCCGGCAGAGAGAGTTGAGGAGACAGGCCGTCGCTTGGCGGCCTATGCAGAGAGTTTTAACGTGCCATTTGAGTATAATGCTATAGCAAAAAAATGGGAAACAATTACAGTTGAAGATCTCAATATAGATCAGGATGAGTTCCTAGTTGTTAACTGTTTGTATCGAGCTAAAAATTTGCTTGAGGAGAGTGTTGCCACAGAGAGTGCTAGAAATACTGTTCTTAGATTGATACACAAAATTAATCCTAACTTATTCATCAGTGGCGTTGTCAATGGGGCATACAATGCTCCTTTCTTTGTTACCCGATTTCGAGAGGCTTTGTTTCACTTTTCTGCTATCTTTGATATGCTTGAAACTGTTGTACCTCGTGAGGATTGGGAGAGAATGCTGTTGGAGAGAGAGATCTTTGGCAGGGAAGCTTTAAATGTTATAGCATGTGAGGGATGGGAGCGAGTGGAAAGACCAGAAACATACAAGCAATGGCAATTCCGGATCATGAGGGCTGGATTTGTGCAACTACCTTTTGATCCTGAGATTTTTGGGAGAGCAGTTGAAAAGGTGCGGTCAAGTTACCACAAAGATTTTTTGATTGATGAAGATAGTAGATGGATACTGCAGGGATGGAAAGGTCGAATTATATATGCCATCTCTGCGTGGAAACCTACTACTGGGTAA 2277 42.34 MDPLLRRQAGSTNGILIGNGSFAVQSQENALGSSRFQNTILSHNFQEFDCLPPDPSPSNIASSSSIITSSSNDASHEEDYLEDCDFSDAVLRFINQILMEEDMEDKTCMLQDSLDLQAAEKQFYEVLGKQYPPSSEPSRSLANQYSDSFNEELCGDSSNYLNGYNNTSYYGDDNHFQHQSEDVFQIRSTLGDTISPSSNSSSNSIISGADGWVDFSNNTIRVPEPNNRSQSIWQFQKGFEEASKFLPGGNNLCLDFEANGSATQGSDEGTSQIYVKAARKDQRDVLSVESRGRKNPHDENGDLEEERSSKQAAVFTESTLRSKMFDIVLLCSAGEGHDRLVSFRQELQNAKLKSMLQTGQLKESSGGRGRRKKQSGKKEVVDLRTLLISCAQAVAADDHRNANELLKQVRQHASPFGDGNQRLASCFADGLEARLAGTGSQIYKGLINKRTSAADVLKAYHLYLAACPFRKISNFTSNRTIMIAAENATKLHVIDFGILYGFQWPTLIQRLSWRKGGPPKLRITGIEFPQPGFRPAERVEETGRRLAAYAESFNVPFEYNAIAKKWETITVEDLNIDQDEFLVVNCLYRAKNLLEESVATESARNTVLRLIHKINPNLFISGVVNGAYNAPFFVTRFREALFHFSAIFDMLETVVPREDWERMLLEREIFGREALNVIACEGWERVERPETYKQWQFRIMRAGFVQLPFDPEIFGRAVEKVRSSYHKDFLIDEDSRWILQGWKGRIIYAISAWKPTTG 758
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 1949717 1951993 - Maker00033592 Lcy5g0199 632014
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy5g0199 758 MobiDBLite consensus disorder prediction 284 310 - -
Lcy5g0199 758 ProSiteProfiles GRAS family profile. 374 754 IPR005202 -
Lcy5g0199 758 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 357 753 IPR005202 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0043565(PANTHER)
Lcy5g0199 758 MobiDBLite consensus disorder prediction 354 377 - -
Lcy5g0199 758 Pfam GRAS domain family 383 754 IPR005202 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy5g0199 Lcy-Chr5:1949717 Lcy8g1366 Lcy-Chr8:40399681 2.77E-70 dispersed
Lcy11g0169 Lcy-Chr11:1863010 Lcy5g0199 Lcy-Chr5:1949717 1.61E-186 wgd
Lcy5g0199 Lcy-Chr5:1949717 Lcy8g1797 Lcy-Chr8:44374285 1.22E-190 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
20045 None None None None Lcy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy5g0199 K27753 - csv:101205887 1298.88