Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy5g0199 ATGGATCCACTCCTTAGACGACAGGCTGGTTCCACGAATGGAATTCTTATAGGTAATGGTTCTTTTGCGGTTCAATCACAAGAGAACGCTCTTGGCAGTTCTAGATTTCAGAATACCATTTTGAGTCATAACTTTCAAGAATTTGATTGCCTTCCCCCTGATCCATCACCGAGTAACATAGCCTCAAGCTCCAGTATTATCACCTCATCTTCTAATGATGCGAGTCATGAGGAGGATTATCTGGAAGATTGCGATTTTTCTGATGCTGTTTTGAGATTCATAAATCAGATTCTCATGGAAGAAGATATGGAGGACAAGACTTGCATGCTTCAAGATTCTTTGGATCTTCAAGCCGCCGAGAAACAATTCTACGAGGTCCTTGGAAAACAGTATCCTCCTTCCTCAGAACCAAGTAGATCTCTGGCCAATCAATACAGCGATAGCTTCAATGAAGAACTTTGTGGAGATAGTAGTAATTACCTGAATGGTTACAATAATACTTCTTATTATGGTGATGATAATCATTTTCAACATCAGAGTGAAGATGTATTTCAAATCAGAAGCACTTTGGGTGATACCATTTCTCCATCATCTAATAGCTCCTCAAATAGTATAATTAGCGGGGCTGATGGGTGGGTGGACTTCTCGAATAATACAATTCGAGTCCCGGAGCCTAATAACAGAAGTCAATCTATTTGGCAGTTTCAAAAAGGGTTTGAAGAGGCAAGCAAATTTTTACCTGGTGGAAACAACCTGTGTCTTGATTTTGAGGCAAACGGGTCAGCAACTCAGGGTTCGGACGAGGGAACAAGCCAGATATATGTGAAGGCAGCAAGAAAGGATCAGAGGGATGTTTTGTCGGTTGAATCACGAGGAAGAAAGAATCCTCATGATGAGAATGGAGATTTGGAAGAAGAGAGAAGCAGCAAGCAAGCAGCTGTATTTACAGAATCGACCTTGCGATCTAAGATGTTTGATATTGTGTTGCTTTGTAGTGCAGGGGAGGGGCATGATCGGTTAGTTTCATTTCGACAGGAATTACAGAATGCCAAACTCAAAAGCATGCTGCAGACTGGGCAACTTAAAGAGTCTAGTGGTGGGAGGGGTCGTCGGAAGAAGCAAAGTGGGAAAAAGGAGGTTGTGGATTTGAGAACTCTTCTAATTAGCTGTGCTCAAGCCGTTGCAGCTGATGACCATAGGAATGCCAATGAGCTTCTAAAGCAGGTCAGGCAACATGCTTCTCCTTTTGGGGATGGAAATCAGAGGTTGGCTAGTTGTTTTGCTGATGGTCTGGAGGCACGCTTGGCAGGCACTGGTAGCCAGATTTACAAAGGTCTAATTAATAAAAGAACATCTGCTGCTGATGTATTGAAAGCCTACCACCTGTATCTTGCTGCATGCCCATTTAGGAAGATTTCTAATTTTACTTCAAACAGGACTATAATGATTGCTGCAGAGAATGCAACTAAGCTTCATGTCATAGATTTTGGTATTCTTTACGGTTTCCAGTGGCCTACTTTAATTCAGAGGCTGTCATGGAGAAAAGGAGGACCTCCAAAGCTTCGGATTACTGGAATAGAATTTCCCCAGCCTGGCTTCCGTCCGGCAGAGAGAGTTGAGGAGACAGGCCGTCGCTTGGCGGCCTATGCAGAGAGTTTTAACGTGCCATTTGAGTATAATGCTATAGCAAAAAAATGGGAAACAATTACAGTTGAAGATCTCAATATAGATCAGGATGAGTTCCTAGTTGTTAACTGTTTGTATCGAGCTAAAAATTTGCTTGAGGAGAGTGTTGCCACAGAGAGTGCTAGAAATACTGTTCTTAGATTGATACACAAAATTAATCCTAACTTATTCATCAGTGGCGTTGTCAATGGGGCATACAATGCTCCTTTCTTTGTTACCCGATTTCGAGAGGCTTTGTTTCACTTTTCTGCTATCTTTGATATGCTTGAAACTGTTGTACCTCGTGAGGATTGGGAGAGAATGCTGTTGGAGAGAGAGATCTTTGGCAGGGAAGCTTTAAATGTTATAGCATGTGAGGGATGGGAGCGAGTGGAAAGACCAGAAACATACAAGCAATGGCAATTCCGGATCATGAGGGCTGGATTTGTGCAACTACCTTTTGATCCTGAGATTTTTGGGAGAGCAGTTGAAAAGGTGCGGTCAAGTTACCACAAAGATTTTTTGATTGATGAAGATAGTAGATGGATACTGCAGGGATGGAAAGGTCGAATTATATATGCCATCTCTGCGTGGAAACCTACTACTGGGTAA 2277 42.34 MDPLLRRQAGSTNGILIGNGSFAVQSQENALGSSRFQNTILSHNFQEFDCLPPDPSPSNIASSSSIITSSSNDASHEEDYLEDCDFSDAVLRFINQILMEEDMEDKTCMLQDSLDLQAAEKQFYEVLGKQYPPSSEPSRSLANQYSDSFNEELCGDSSNYLNGYNNTSYYGDDNHFQHQSEDVFQIRSTLGDTISPSSNSSSNSIISGADGWVDFSNNTIRVPEPNNRSQSIWQFQKGFEEASKFLPGGNNLCLDFEANGSATQGSDEGTSQIYVKAARKDQRDVLSVESRGRKNPHDENGDLEEERSSKQAAVFTESTLRSKMFDIVLLCSAGEGHDRLVSFRQELQNAKLKSMLQTGQLKESSGGRGRRKKQSGKKEVVDLRTLLISCAQAVAADDHRNANELLKQVRQHASPFGDGNQRLASCFADGLEARLAGTGSQIYKGLINKRTSAADVLKAYHLYLAACPFRKISNFTSNRTIMIAAENATKLHVIDFGILYGFQWPTLIQRLSWRKGGPPKLRITGIEFPQPGFRPAERVEETGRRLAAYAESFNVPFEYNAIAKKWETITVEDLNIDQDEFLVVNCLYRAKNLLEESVATESARNTVLRLIHKINPNLFISGVVNGAYNAPFFVTRFREALFHFSAIFDMLETVVPREDWERMLLEREIFGREALNVIACEGWERVERPETYKQWQFRIMRAGFVQLPFDPEIFGRAVEKVRSSYHKDFLIDEDSRWILQGWKGRIIYAISAWKPTTG 758
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 1949717 1951993 - Maker00033592 Lcy5g0199 632014

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lcy5g0199 758 MobiDBLite consensus disorder prediction 284 310 - -
Lcy5g0199 758 ProSiteProfiles GRAS family profile. 374 754 IPR005202 -
Lcy5g0199 758 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 357 753 IPR005202 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0043565(PANTHER)
Lcy5g0199 758 MobiDBLite consensus disorder prediction 354 377 - -
Lcy5g0199 758 Pfam GRAS domain family 383 754 IPR005202 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy5g0199 K27753 - - csv:101205887 1298.88
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy5g0199 Lcy-Chr5:1949717 Lcy8g1366 Lcy-Chr8:40399681 2.77E-70 dispersed
Lcy11g0169 Lcy-Chr11:1863010 Lcy5g0199 Lcy-Chr5:1949717 1.61E-186 wgd
Lcy5g0199 Lcy-Chr5:1949717 Lcy8g1797 Lcy-Chr8:44374285 1.22E-190 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lcy5g0199 . 77 757 GRAS Transcription Factor Family AT2G37650 54.6 4.4e-198 688.7
Lcy11g0169 . 245 697 GRAS Transcription Factor Family AT3G46600 50.5 1.1e-127 454.5
Lcy1g0926 . 49 470 GRAS Transcription Factor Family AT3G49950 60.7 1.1e-137 487.3
Lcy6g2096 . 417 781 GRAS Transcription Factor Family AT3G60630 51.4 6.4e-92 335.9
Lcy6g0948 . 80 531 GRAS Transcription Factor Family AT4G36710 54.4 9.6e-128 454.5
Lcy6g0725 . 42 449 GRAS Transcription Factor Family AT5G41920 67.8 3.9e-151 531.9
Lcy1g1654 . 458 834 GRAS Transcription Factor Family AT5G41920 56.6 4.6e-115 412.1
Lcy1g0718 . 61 601 GRAS Transcription Factor Family AT5G66770 57.7 1.3e-166 583.9
Lcy6g0963 . 8 537 GRAS Transcription Factor Family AT5G66770 56.6 1.8e-152 537.0
Lcy8g1366 . 44 535 GRAS Transcription Factor Family AT1G50600 60.0 1.6e-165 580.1
Lcy6g1707 . 106 541 GRAS Transcription Factor Family AT1G50600 64.4 5.5e-161 565.1
Lcy9g1234 . 223 593 GRAS Transcription Factor Family AT1G50600 62.5 7.9e-136 481.5
Lcy9g0957 . 195 577 GRAS Transcription Factor Family AT1G50600 50.7 7.0e-108 388.7
Lcy10g1389 . 44 579 GRAS Transcription Factor Family AT1G14920 68.8 1.1e-209 726.9
Lcy10g1141 . 1305 1851 GRAS Transcription Factor Family AT1G14920 61.6 1.8e-180 629.8
Lcy12g0184 . 1 544 GRAS Transcription Factor Family AT1G14920 54.1 3.4e-158 555.8
Lcy10g1389 . 1 577 GRAS Transcription Factor Family AT1G66350 57.6 2.2e-175 612.8
Lcy10g1141 . 1305 1852 GRAS Transcription Factor Family AT1G66350 60.3 3.8e-175 612.1
Lcy12g0184 . 1 541 GRAS Transcription Factor Family AT1G66350 58.3 2.6e-168 589.3
Lcy8g1797 . 260 789 GRAS Transcription Factor Family AT1G07520 50.5 7.5e-142 501.5
Lcy8g1366 . 8 535 GRAS Transcription Factor Family AT5G48150 65.5 1.0e-193 673.7
Lcy6g1707 . 111 541 GRAS Transcription Factor Family AT5G48150 69.4 1.8e-174 609.8
Lcy9g1234 . 113 593 GRAS Transcription Factor Family AT5G48150 51.7 3.0e-137 486.1
Lcy10g1389 . 46 578 GRAS Transcription Factor Family AT2G01570 69.7 3.3e-215 745.3
Lcy10g1141 . 1307 1849 GRAS Transcription Factor Family AT2G01570 60.9 4.1e-181 632.1
Lcy12g0184 . 27 542 GRAS Transcription Factor Family AT2G01570 57.8 2.9e-163 572.8
Lcy10g1389 . 1 577 GRAS Transcription Factor Family AT1G66350 57.6 2.2e-175 612.8
Lcy10g1141 . 1305 1852 GRAS Transcription Factor Family AT1G66350 60.3 3.8e-175 612.1
Lcy12g0184 . 1 541 GRAS Transcription Factor Family AT1G66350 58.3 2.6e-168 589.3
Lcy10g1141 . 1307 1848 GRAS Transcription Factor Family AT3G03450 60.6 1.3e-173 607.1
Lcy10g1389 . 46 576 GRAS Transcription Factor Family AT3G03450 60.6 4.6e-171 598.6
Lcy12g0184 . 27 542 GRAS Transcription Factor Family AT3G03450 58.6 3.4e-158 555.8
Lcy10g1141 . 1306 1851 GRAS Transcription Factor Family AT5G17490 56.8 2.1e-157 553.1
Lcy10g1389 . 42 579 GRAS Transcription Factor Family AT5G17490 56.9 4.7e-157 552.0
Lcy12g0184 . 24 543 GRAS Transcription Factor Family AT5G17490 55.1 9.3e-145 511.1
Lcy9g0957 . 1 577 GRAS Transcription Factor Family AT1G21450 57.6 8.8e-176 614.4
Lcy6g1707 . 165 541 GRAS Transcription Factor Family AT1G21450 53.4 2.7e-116 416.8
Lcy5g0199 . 307 756 GRAS Transcription Factor Family AT5G59450 50.1 1.2e-122 438.0
Lcy8g1366 . 15 534 GRAS Transcription Factor Family AT4G17230 51.3 1.1e-145 514.2
Lcy6g1707 . 84 541 GRAS Transcription Factor Family AT4G17230 53.7 2.2e-133 473.4
Lcy9g1234 . 220 593 GRAS Transcription Factor Family AT4G17230 53.2 3.3e-113 406.4
Lcy8g1366 . 123 535 GRAS Transcription Factor Family AT2G04890 67.1 1.3e-162 570.1
Lcy6g1707 . 163 541 GRAS Transcription Factor Family AT2G04890 65.2 5.1e-146 515.0
Lcy9g1234 . 175 593 GRAS Transcription Factor Family AT2G04890 55.7 1.1e-129 460.7
Lcy2g1246 . 1 472 GRAS Transcription Factor Family AT1G50420 65.6 3.9e-174 608.6
Lcy7g0679 . 180 641 GRAS Transcription Factor Family AT1G50420 61.1 5.7e-157 551.6
Lcy6g2096 . 417 780 GRAS Transcription Factor Family AT4G00150 55.7 1.3e-104 377.9
Lcy1g0718 . 57 601 GRAS Transcription Factor Family AT3G50650 53.1 3.0e-146 516.2
Lcy6g0963 . 11 537 GRAS Transcription Factor Family AT3G50650 51.8 1.2e-131 467.6
Lcy1g1654 . 180 832 GRAS Transcription Factor Family AT3G54220 60.4 2.2e-204 709.5
Lcy6g0725 . 82 447 GRAS Transcription Factor Family AT3G54220 64.5 5.8e-136 482.3
Lcy1g0915 . 101 492 GRAS Transcription Factor Family AT4G37650 68.3 2.2e-157 553.1
Lcy8g0721 . 115 503 GRAS Transcription Factor Family AT4G37650 61.7 3.8e-138 489.2
Lcy3g1226 . 62 453 GRAS Transcription Factor Family AT4G37650 51.8 8.3e-117 418.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003169 3 2 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 5 2 1 1 2 1 1 1 1 1 4 1 4 51
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
20045 None None None None Lcy TF