Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy5g0212 ATGAATTTTTCCTCCATTCCTGCTTATCTTGATCCTTCCAACTGGCAACAGCAAGTCACCCATCAAGTGGGAAGTGGCAGCAGCACTGGAGTTAGTTCTCAGCTTCCACCACCTCCGCCTCCTCCACCGCCTCCTCCGCCGCCACCCCATGGCGTCGGTGGTAGCGGTTCGATCCGGCCCGGCTCGATGGCCGAGCGAGCTCGATTGGCGAATATTCCTATGCCTGAGGCAGCATTGAAATGCCCAAGATGTGAATCAACCAACACTAAGTTCTGTTACTTCAACAATTACAGCCTCACTCAGCCTCGCCACTTTTGCAAGACTTGTAGAAGGTACTGGACAAGAGGTGGGGCCCTCAGGAACGTCCCGGTCGGGGGCGGGTGCCGGAGGAACAAAAGAAGCAAAGGGAGCAGCTCGAAATCGCCGCCGGTCAGCTCGGACCGGCAACAAACCAGCGGTTCAGGCAATTCCTCATCAAGTGCAATAGCTTCCAACAACAGTGGAGGCCTTTCCCCACAGATCCCACCACTCCGGTTCATGGCTCCTCTCCACCAACAGCTCACTGACTTCGACATGGGACCCTTCAACTACGGCGGCGGCCTCTCATCTCCGGCCACCGCCGCCGGCGACCTGAGTTTCCAATTGGGCAACACCAATTTAGCTGGAGGAACAAGCATTGGATCTCTCTTGGGATTTGACCAACAATGGCGGCTCCAGCAACAAGCTCCCCAATTTCCCTTCCTGTCCGGCCTCGACCCTTTCGACGGCGGTAGCAGCGGTGGCGGCGGAGACGCGTCCGGCTGGCAAATGAGGCCAAAATTACCATCAAGTTCAAGGAATTTAAGCCAAATTGGGAATAATTCAGTGAAAATGGAAGAAACCCCAGATCATCAAGTTAATGTTGGAAGACAATTTCTTGGCAATGAGCAATATTGGAGCAGTGGATCAATGGCATGGTCAGATCTTTCTGGTTTCAGTTCTTCATCTTCAACAAGAAACCCATTATAG 1008 53.47 MNFSSIPAYLDPSNWQQQVTHQVGSGSSTGVSSQLPPPPPPPPPPPPPPHGVGGSGSIRPGSMAERARLANIPMPEAALKCPRCESTNTKFCYFNNYSLTQPRHFCKTCRRYWTRGGALRNVPVGGGCRRNKRSKGSSSKSPPVSSDRQQTSGSGNSSSSAIASNNSGGLSPQIPPLRFMAPLHQQLTDFDMGPFNYGGGLSSPATAAGDLSFQLGNTNLAGGTSIGSLLGFDQQWRLQQQAPQFPFLSGLDPFDGGSSGGGGDASGWQMRPKLPSSSRNLSQIGNNSVKMEETPDHQVNVGRQFLGNEQYWSSGSMAWSDLSGFSSSSSTRNPL 335
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 2041717 2043671 + Maker00033259 Lcy5g0212 632027
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy5g0212 335 ProSiteProfiles Zinc finger Dof-type profile. 79 133 IPR003851 GO:0003677(InterPro)|GO:0006355(InterPro)
Lcy5g0212 335 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 67 161 IPR045174 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy5g0212 335 MobiDBLite consensus disorder prediction 33 53 - -
Lcy5g0212 335 MobiDBLite consensus disorder prediction 1 32 - -
Lcy5g0212 335 MobiDBLite consensus disorder prediction 1 61 - -
Lcy5g0212 335 ProSitePatterns Zinc finger Dof-type signature. 81 117 IPR003851 GO:0003677(InterPro)|GO:0006355(InterPro)
Lcy5g0212 335 MobiDBLite consensus disorder prediction 137 172 - -
Lcy5g0212 335 MobiDBLite consensus disorder prediction 251 283 - -
Lcy5g0212 335 SUPERFAMILY Formin homology 2 domain (FH2 domain) 39 47 - -
Lcy5g0212 335 MobiDBLite consensus disorder prediction 120 176 - -
Lcy5g0212 335 Pfam Dof domain, zinc finger 78 133 IPR003851 GO:0003677(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy1g1448 Lcy-Chr1:14051107 Lcy5g0212 Lcy-Chr5:2041717 4.59E-43 dispersed
Lcy5g0212 Lcy-Chr5:2041717 Lcy7g0883 Lcy-Chr7:8810273 8.07E-49 dispersed
Lcy10g1842 Lcy-Chr10:42711740 Lcy5g0212 Lcy-Chr5:2041717 4.69E-59 wgd
Lcy11g0196 Lcy-Chr11:2320838 Lcy5g0212 Lcy-Chr5:2041717 3.80E-53 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
20047 None None None None Lcy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy5g0212 - - - 0.0