Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy5g0222 AAAAAGTTGGAGACCTCTGCTCATGCCTTATGGTTTTGTAAGTTTTCTAAAAAGAGTTGGCTCAATTTCCTTCTCCACTTAGACGATTTCTATCCTGTGTGCAAGGCTAATTGGAATATGATCGAAATTTGGGAAGGTTTGTTAATTAGACTCTCTGGGGATGAGATTCTAATGACTGCTATCATCCTTTGGAATTTATGGAATTTTCGTAACAAGCACAGTGGTATTGAGTTTAGGAGTTCTAACCTGGAAAGTGCCAGTGCGGAGATCCTTTCAAGTCACGTTTCATGGCAACCTTCTCCTCCATCCAAGTTGAAGCTTAACGTGGACGCATCGTGGAACTCCTCCATCCAATTTGGCGGCATGAGGTGGGTGATTCGTGACTTCAAAGGATCTCTAGTGGCTGCTGGCTACAAGGAAATCAAAAGACCATGGTCAATTATCATGCTGGAAGCTTGTATGATTAAAGAAGAGGTGATCAACTACCTAAATCAGTGTAGAGATCTCAAATTACCTCTCATTGTGGAGTTGGATTCTGAATCGCTGATCAATGTGATCAACCGCCAAATCGATAATTTCTCAGAAGTTCAGGACGTCATAAGCGAAATCCGGGACCTCACGAAATTGATGAAAGATATTTGCTTATCGTGGTGCCCTAGGGCTGGAAATGTAGTGGTGCACTCCTTGGCGCGCAGAGCTTCCTCACTGTCGTCGTCTCTACCTCAGGGGGGGCTCTATTTTATTTGGAGGAATATATATTGGATGGGAGAAGAAGCAGCTGGTTTGGCTGCAGTTACAAATGAGCCGCTGGGGAAAGAGAGTGCTTCGAGTACCGAATTGAAGCGGGACCATCAGTGTCTTGATGAAGATACGGAACCCGAGGCGTTTCACAACAAGAAGCTGGCAAAAGAAGTGTCGAATGAAGACGTTCGTTCAGAAGTTTCGAATCCCGTAATTTCTCCGAAAGGGAACCATTTCCAAGATATTACTAGCCAGCCAGACGAGCAAGAAAATACCAACCAAGTCGAGCGCGGGGACCTTACGTCAGCTTGTTCGGGAAATTCAAGCTCAGAGGATACCTCAAGCGATGGAGTTCCTTGCCAGAACAATACGTCTCGAAATGACGCTGATATGTGTGATGTTGATGAGGTCTCCCGGTTTGTGATTGAAATTCCTAAGCATGCTAGTTCAACTGGAATTAGGAAAATTACGTTCAAATTCAGCAAAACAAAGGACAACAAAATTCATTCTTATGGAAACTCTGACAAGGACGGTAAACCAGAACCATCAACAGTGGATGATGCTTATACGGAGACGTCTGCACATAGCTGGGAAGGCTGTTCTGAGAGCAGCAGATTTCCTTCAGGCCCAAATAAAATGGAATTGAAAATGTCGAAGAAGGTTTTACCAAACAATTACCCGTCAAATGTTAAAAAGCTGCTGTCGACTGGTATACTTGACGGAGCTCGAGTCAAGTATATATCTACGACAAGTGAGATAAAGCTAAATGGTATTATAAATGGCGGAGGTTATATGTGCGGATGTTCAATATGCAATTTTACAACTATCCTCAGTGCTTATGAGTTTGAGCAGCATGCTGGTTTCAAGACTAGACATCCAAATAATCATATATACCTGGAAAATGGGAGGCCAATTTATAATGTCATACAGGAAATTAAGAGTGCACCTCTTAGCATATTAGATGAAGTGATTAAGGAAGTAGCGGGGTCATCTGTTAACGTGGATTCATTTGAGGCTTGGAAAGCAAGTTTCCACCAAAACAGTGCAAGTATTGAAGTGGAAAATGATGATGCGAAGCTTCCTAAATTGTCACATTCCATTGAGAGACCAAACCCTAATTTATCCAACCCAGTCATGCAACAGAAGAAAACGGCAGAAAAAGGCACAAAAAGAAGGGATAATGATCTTCACAGGCTACTTTTCATGCCAAATGGGCTTCCGGATGGGGCTGAGCTGGCTTACTTTGTCAAAGGACAGAGAATACTTGGAGGCTACAAGCAAGGAAATGGTATACTCTGTAGTCACTGTAATCGAGAGATTAGCCCTTCCCAATTTGAAGCCCATGCAGGGATGGCTGCCAGACGTCAACCCTACCGCCACATTTATACTACAAATGGACTTACACTTCATGATATTGCCATTTCCCTGGCTAGTGGGCAAAAACTTACCACCGGAGACAGTGATGATATGTGTGCTGCATGTGGTAATGGAGGGGATTTGATTTTCTGTGATCGCTGTCCTCGAGCTTTCCATACAGGGTGCCTGCATCTGCAAAATGTTCCTGAAGGTGTTTGGTGTTGCCCTAACTGTAGAGATAAAGTGGGTTCCAGTTTGAAGGCTGCTTCCGGAGGTTCTTTGAGTTTTCCAAAGCCAATTGTATTCAGGTTGACACGAGTTGTTAAAGCACCTGAGTATGAAATTGGTGGTTGTGTTGTTTGCAGGCGACATGATTTCAGTGCAGCTAAATTTGATGATCGAACTGTACTGCTATGTGATCAATGTGAAAGAGAATTCCATGTAGGCTGTCTGCGGGATAGTGGATTATGTGATCTGAAGGAACTCCCCAAGGATAAGTGGTTCTGCTGTGACGAGTGCAGTAATATCCATGTGGCCCTTCAGAATACAGTTTTGAACGGGGCACAGATTATCCCAGATTCATTATCAGATTTAATAATCAGAAAGCACGTTGGAAAAGGATTATTAGTTGATGAAGCTCTTAATGATGTTCGGTGGCAAATTTTAAGTGGAAAAAGTCGCTACCCAGAAGATCTTCCATTTCTTTCAAGGGCGACTGCTATTTTTCGAGAATGTTTTGATCCTATTGTTGCAAAATCAGGTCGTGATTTGATACCCGTTATGGTTTATGGGAGAAATATATCAGGACAAGAGTTTGGAGGAATGTATTGTGTTGTTTTAATTGTGAGGTCAATAGTTGTATCGGCTGGTCTTCTTAGGATCTTTGGTCGTGAAGTTGCTGAGCTTCCTATTGTTGCCACAAGTAGAGAACATCAGGGCAAGGGTTACTTCCAAGTATTGTTTTCCTGTATAGAGCGGCTACTTTCTTCCTTAAATGTGCAAAACCTTGTACTCCCTGCAGCCGAGGATGCTGAATCAATTTGGACCAAGAAATTGGGTTTCAGAAAGATGAGTGAAGAACAAGTAAGTAATATTCCAGCATGCTATGTTGATAAAGTACATGAGGGAGGTCCAGCTGACGATCTTCAACGGAACATCGATGCTAGAGAAGGTGGTGCAGCAGTCAACCTCATGACATAA 3297 42.86 KKLETSAHALWFCKFSKKSWLNFLLHLDDFYPVCKANWNMIEIWEGLLIRLSGDEILMTAIILWNLWNFRNKHSGIEFRSSNLESASAEILSSHVSWQPSPPSKLKLNVDASWNSSIQFGGMRWVIRDFKGSLVAAGYKEIKRPWSIIMLEACMIKEEVINYLNQCRDLKLPLIVELDSESLINVINRQIDNFSEVQDVISEIRDLTKLMKDICLSWCPRAGNVVVHSLARRASSLSSSLPQGGLYFIWRNIYWMGEEAAGLAAVTNEPLGKESASSTELKRDHQCLDEDTEPEAFHNKKLAKEVSNEDVRSEVSNPVISPKGNHFQDITSQPDEQENTNQVERGDLTSACSGNSSSEDTSSDGVPCQNNTSRNDADMCDVDEVSRFVIEIPKHASSTGIRKITFKFSKTKDNKIHSYGNSDKDGKPEPSTVDDAYTETSAHSWEGCSESSRFPSGPNKMELKMSKKVLPNNYPSNVKKLLSTGILDGARVKYISTTSEIKLNGIINGGGYMCGCSICNFTTILSAYEFEQHAGFKTRHPNNHIYLENGRPIYNVIQEIKSAPLSILDEVIKEVAGSSVNVDSFEAWKASFHQNSASIEVENDDAKLPKLSHSIERPNPNLSNPVMQQKKTAEKGTKRRDNDLHRLLFMPNGLPDGAELAYFVKGQRILGGYKQGNGILCSHCNREISPSQFEAHAGMAARRQPYRHIYTTNGLTLHDIAISLASGQKLTTGDSDDMCAACGNGGDLIFCDRCPRAFHTGCLHLQNVPEGVWCCPNCRDKVGSSLKAASGGSLSFPKPIVFRLTRVVKAPEYEIGGCVVCRRHDFSAAKFDDRTVLLCDQCEREFHVGCLRDSGLCDLKELPKDKWFCCDECSNIHVALQNTVLNGAQIIPDSLSDLIIRKHVGKGLLVDEALNDVRWQILSGKSRYPEDLPFLSRATAIFRECFDPIVAKSGRDLIPVMVYGRNISGQEFGGMYCVVLIVRSIVVSAGLLRIFGREVAELPIVATSREHQGKGYFQVLFSCIERLLSSLNVQNLVLPAAEDAESIWTKKLGFRKMSEEQVSNIPACYVDKVHEGGPADDLQRNIDAREGGAAVNLMT 1098
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 2137720 2150403 + Maker00033102 Lcy5g0222 632037
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy5g0222 1098 Gene3D - 103 238 IPR036397 GO:0003676(InterPro)
Lcy5g0222 1098 Gene3D - 962 1071 - -
Lcy5g0222 1098 MobiDBLite consensus disorder prediction 311 375 - -
Lcy5g0222 1098 MobiDBLite consensus disorder prediction 414 431 - -
Lcy5g0222 1098 ProSiteProfiles Zinc finger PHD-type profile. 814 875 IPR019787 -
Lcy5g0222 1098 ProSitePatterns Zinc finger PHD-type signature. 817 872 IPR019786 -
Lcy5g0222 1098 Pfam PHD-finger 738 777 IPR019787 -
Lcy5g0222 1098 SUPERFAMILY Ribonuclease H-like 105 236 IPR012337 -
Lcy5g0222 1098 MobiDBLite consensus disorder prediction 615 630 - -
Lcy5g0222 1098 ProSiteProfiles Zinc finger PHD-type profile. 735 780 IPR019787 -
Lcy5g0222 1098 FunFam PHD zinc finger protein 815 875 - -
Lcy5g0222 1098 Pfam Tify domain binding domain 671 720 IPR032308 -
Lcy5g0222 1098 Pfam Tify domain binding domain 504 558 IPR032308 -
Lcy5g0222 1098 MobiDBLite consensus disorder prediction 273 376 - -
Lcy5g0222 1098 SUPERFAMILY FYVE/PHD zinc finger 733 781 IPR011011 -
Lcy5g0222 1098 CDD RNase_H_like 107 227 IPR044730 -
Lcy5g0222 1098 MobiDBLite consensus disorder prediction 414 434 - -
Lcy5g0222 1098 MobiDBLite consensus disorder prediction 275 310 - -
Lcy5g0222 1098 ProSitePatterns Zinc finger PHD-type signature. 738 777 IPR019786 -
Lcy5g0222 1098 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 726 793 IPR013083 -
Lcy5g0222 1098 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 815 875 IPR013083 -
Lcy5g0222 1098 PANTHER AUTOIMMUNE REGULATOR 277 1065 - GO:0000977(PANTHER)|GO:0003682(PANTHER)|GO:0005634(PANTHER)|GO:0042393(PANTHER)|GO:0045944(PANTHER)
Lcy5g0222 1098 MobiDBLite consensus disorder prediction 614 639 - -
Lcy5g0222 1098 Pfam Reverse transcriptase-like 108 233 IPR002156 GO:0003676(InterPro)|GO:0004523(InterPro)
Lcy5g0222 1098 SMART PHD_3 816 873 IPR001965 -
Lcy5g0222 1098 SMART PHD_3 737 778 IPR001965 -
Lcy5g0222 1098 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 967 1060 IPR016181 -
Lcy5g0222 1098 SUPERFAMILY FYVE/PHD zinc finger 815 870 IPR011011 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy5g0222 Lcy-Chr5:2137720 Lcy5g0338 Lcy-Chr5:3388195 6.00E-131 dispersed
Lcy5g0222 Lcy-Chr5:2137720 Lcy8g1947 Lcy-Chr8:45690168 2.19E-172 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
20048 None None None None Lcy TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy5g0222 - - - 0.0