Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy5g0222 AAAAAGTTGGAGACCTCTGCTCATGCCTTATGGTTTTGTAAGTTTTCTAAAAAGAGTTGGCTCAATTTCCTTCTCCACTTAGACGATTTCTATCCTGTGTGCAAGGCTAATTGGAATATGATCGAAATTTGGGAAGGTTTGTTAATTAGACTCTCTGGGGATGAGATTCTAATGACTGCTATCATCCTTTGGAATTTATGGAATTTTCGTAACAAGCACAGTGGTATTGAGTTTAGGAGTTCTAACCTGGAAAGTGCCAGTGCGGAGATCCTTTCAAGTCACGTTTCATGGCAACCTTCTCCTCCATCCAAGTTGAAGCTTAACGTGGACGCATCGTGGAACTCCTCCATCCAATTTGGCGGCATGAGGTGGGTGATTCGTGACTTCAAAGGATCTCTAGTGGCTGCTGGCTACAAGGAAATCAAAAGACCATGGTCAATTATCATGCTGGAAGCTTGTATGATTAAAGAAGAGGTGATCAACTACCTAAATCAGTGTAGAGATCTCAAATTACCTCTCATTGTGGAGTTGGATTCTGAATCGCTGATCAATGTGATCAACCGCCAAATCGATAATTTCTCAGAAGTTCAGGACGTCATAAGCGAAATCCGGGACCTCACGAAATTGATGAAAGATATTTGCTTATCGTGGTGCCCTAGGGCTGGAAATGTAGTGGTGCACTCCTTGGCGCGCAGAGCTTCCTCACTGTCGTCGTCTCTACCTCAGGGGGGGCTCTATTTTATTTGGAGGAATATATATTGGATGGGAGAAGAAGCAGCTGGTTTGGCTGCAGTTACAAATGAGCCGCTGGGGAAAGAGAGTGCTTCGAGTACCGAATTGAAGCGGGACCATCAGTGTCTTGATGAAGATACGGAACCCGAGGCGTTTCACAACAAGAAGCTGGCAAAAGAAGTGTCGAATGAAGACGTTCGTTCAGAAGTTTCGAATCCCGTAATTTCTCCGAAAGGGAACCATTTCCAAGATATTACTAGCCAGCCAGACGAGCAAGAAAATACCAACCAAGTCGAGCGCGGGGACCTTACGTCAGCTTGTTCGGGAAATTCAAGCTCAGAGGATACCTCAAGCGATGGAGTTCCTTGCCAGAACAATACGTCTCGAAATGACGCTGATATGTGTGATGTTGATGAGGTCTCCCGGTTTGTGATTGAAATTCCTAAGCATGCTAGTTCAACTGGAATTAGGAAAATTACGTTCAAATTCAGCAAAACAAAGGACAACAAAATTCATTCTTATGGAAACTCTGACAAGGACGGTAAACCAGAACCATCAACAGTGGATGATGCTTATACGGAGACGTCTGCACATAGCTGGGAAGGCTGTTCTGAGAGCAGCAGATTTCCTTCAGGCCCAAATAAAATGGAATTGAAAATGTCGAAGAAGGTTTTACCAAACAATTACCCGTCAAATGTTAAAAAGCTGCTGTCGACTGGTATACTTGACGGAGCTCGAGTCAAGTATATATCTACGACAAGTGAGATAAAGCTAAATGGTATTATAAATGGCGGAGGTTATATGTGCGGATGTTCAATATGCAATTTTACAACTATCCTCAGTGCTTATGAGTTTGAGCAGCATGCTGGTTTCAAGACTAGACATCCAAATAATCATATATACCTGGAAAATGGGAGGCCAATTTATAATGTCATACAGGAAATTAAGAGTGCACCTCTTAGCATATTAGATGAAGTGATTAAGGAAGTAGCGGGGTCATCTGTTAACGTGGATTCATTTGAGGCTTGGAAAGCAAGTTTCCACCAAAACAGTGCAAGTATTGAAGTGGAAAATGATGATGCGAAGCTTCCTAAATTGTCACATTCCATTGAGAGACCAAACCCTAATTTATCCAACCCAGTCATGCAACAGAAGAAAACGGCAGAAAAAGGCACAAAAAGAAGGGATAATGATCTTCACAGGCTACTTTTCATGCCAAATGGGCTTCCGGATGGGGCTGAGCTGGCTTACTTTGTCAAAGGACAGAGAATACTTGGAGGCTACAAGCAAGGAAATGGTATACTCTGTAGTCACTGTAATCGAGAGATTAGCCCTTCCCAATTTGAAGCCCATGCAGGGATGGCTGCCAGACGTCAACCCTACCGCCACATTTATACTACAAATGGACTTACACTTCATGATATTGCCATTTCCCTGGCTAGTGGGCAAAAACTTACCACCGGAGACAGTGATGATATGTGTGCTGCATGTGGTAATGGAGGGGATTTGATTTTCTGTGATCGCTGTCCTCGAGCTTTCCATACAGGGTGCCTGCATCTGCAAAATGTTCCTGAAGGTGTTTGGTGTTGCCCTAACTGTAGAGATAAAGTGGGTTCCAGTTTGAAGGCTGCTTCCGGAGGTTCTTTGAGTTTTCCAAAGCCAATTGTATTCAGGTTGACACGAGTTGTTAAAGCACCTGAGTATGAAATTGGTGGTTGTGTTGTTTGCAGGCGACATGATTTCAGTGCAGCTAAATTTGATGATCGAACTGTACTGCTATGTGATCAATGTGAAAGAGAATTCCATGTAGGCTGTCTGCGGGATAGTGGATTATGTGATCTGAAGGAACTCCCCAAGGATAAGTGGTTCTGCTGTGACGAGTGCAGTAATATCCATGTGGCCCTTCAGAATACAGTTTTGAACGGGGCACAGATTATCCCAGATTCATTATCAGATTTAATAATCAGAAAGCACGTTGGAAAAGGATTATTAGTTGATGAAGCTCTTAATGATGTTCGGTGGCAAATTTTAAGTGGAAAAAGTCGCTACCCAGAAGATCTTCCATTTCTTTCAAGGGCGACTGCTATTTTTCGAGAATGTTTTGATCCTATTGTTGCAAAATCAGGTCGTGATTTGATACCCGTTATGGTTTATGGGAGAAATATATCAGGACAAGAGTTTGGAGGAATGTATTGTGTTGTTTTAATTGTGAGGTCAATAGTTGTATCGGCTGGTCTTCTTAGGATCTTTGGTCGTGAAGTTGCTGAGCTTCCTATTGTTGCCACAAGTAGAGAACATCAGGGCAAGGGTTACTTCCAAGTATTGTTTTCCTGTATAGAGCGGCTACTTTCTTCCTTAAATGTGCAAAACCTTGTACTCCCTGCAGCCGAGGATGCTGAATCAATTTGGACCAAGAAATTGGGTTTCAGAAAGATGAGTGAAGAACAAGTAAGTAATATTCCAGCATGCTATGTTGATAAAGTACATGAGGGAGGTCCAGCTGACGATCTTCAACGGAACATCGATGCTAGAGAAGGTGGTGCAGCAGTCAACCTCATGACATAA 3297 42.86 KKLETSAHALWFCKFSKKSWLNFLLHLDDFYPVCKANWNMIEIWEGLLIRLSGDEILMTAIILWNLWNFRNKHSGIEFRSSNLESASAEILSSHVSWQPSPPSKLKLNVDASWNSSIQFGGMRWVIRDFKGSLVAAGYKEIKRPWSIIMLEACMIKEEVINYLNQCRDLKLPLIVELDSESLINVINRQIDNFSEVQDVISEIRDLTKLMKDICLSWCPRAGNVVVHSLARRASSLSSSLPQGGLYFIWRNIYWMGEEAAGLAAVTNEPLGKESASSTELKRDHQCLDEDTEPEAFHNKKLAKEVSNEDVRSEVSNPVISPKGNHFQDITSQPDEQENTNQVERGDLTSACSGNSSSEDTSSDGVPCQNNTSRNDADMCDVDEVSRFVIEIPKHASSTGIRKITFKFSKTKDNKIHSYGNSDKDGKPEPSTVDDAYTETSAHSWEGCSESSRFPSGPNKMELKMSKKVLPNNYPSNVKKLLSTGILDGARVKYISTTSEIKLNGIINGGGYMCGCSICNFTTILSAYEFEQHAGFKTRHPNNHIYLENGRPIYNVIQEIKSAPLSILDEVIKEVAGSSVNVDSFEAWKASFHQNSASIEVENDDAKLPKLSHSIERPNPNLSNPVMQQKKTAEKGTKRRDNDLHRLLFMPNGLPDGAELAYFVKGQRILGGYKQGNGILCSHCNREISPSQFEAHAGMAARRQPYRHIYTTNGLTLHDIAISLASGQKLTTGDSDDMCAACGNGGDLIFCDRCPRAFHTGCLHLQNVPEGVWCCPNCRDKVGSSLKAASGGSLSFPKPIVFRLTRVVKAPEYEIGGCVVCRRHDFSAAKFDDRTVLLCDQCEREFHVGCLRDSGLCDLKELPKDKWFCCDECSNIHVALQNTVLNGAQIIPDSLSDLIIRKHVGKGLLVDEALNDVRWQILSGKSRYPEDLPFLSRATAIFRECFDPIVAKSGRDLIPVMVYGRNISGQEFGGMYCVVLIVRSIVVSAGLLRIFGREVAELPIVATSREHQGKGYFQVLFSCIERLLSSLNVQNLVLPAAEDAESIWTKKLGFRKMSEEQVSNIPACYVDKVHEGGPADDLQRNIDAREGGAAVNLMT 1098
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 2137720 2150403 + Maker00033102 Lcy5g0222 632037

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lcy5g0222 1098 Gene3D - 103 238 IPR036397 GO:0003676(InterPro)
Lcy5g0222 1098 Gene3D - 962 1071 - -
Lcy5g0222 1098 MobiDBLite consensus disorder prediction 311 375 - -
Lcy5g0222 1098 MobiDBLite consensus disorder prediction 414 431 - -
Lcy5g0222 1098 ProSiteProfiles Zinc finger PHD-type profile. 814 875 IPR019787 -
Lcy5g0222 1098 ProSitePatterns Zinc finger PHD-type signature. 817 872 IPR019786 -
Lcy5g0222 1098 Pfam PHD-finger 738 777 IPR019787 -
Lcy5g0222 1098 SUPERFAMILY Ribonuclease H-like 105 236 IPR012337 -
Lcy5g0222 1098 MobiDBLite consensus disorder prediction 615 630 - -
Lcy5g0222 1098 ProSiteProfiles Zinc finger PHD-type profile. 735 780 IPR019787 -
Lcy5g0222 1098 FunFam PHD zinc finger protein 815 875 - -
Lcy5g0222 1098 Pfam Tify domain binding domain 671 720 IPR032308 -
Lcy5g0222 1098 Pfam Tify domain binding domain 504 558 IPR032308 -
Lcy5g0222 1098 MobiDBLite consensus disorder prediction 273 376 - -
Lcy5g0222 1098 SUPERFAMILY FYVE/PHD zinc finger 733 781 IPR011011 -
Lcy5g0222 1098 CDD RNase_H_like 107 227 IPR044730 -
Lcy5g0222 1098 MobiDBLite consensus disorder prediction 414 434 - -
Lcy5g0222 1098 MobiDBLite consensus disorder prediction 275 310 - -
Lcy5g0222 1098 ProSitePatterns Zinc finger PHD-type signature. 738 777 IPR019786 -
Lcy5g0222 1098 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 726 793 IPR013083 -
Lcy5g0222 1098 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 815 875 IPR013083 -
Lcy5g0222 1098 PANTHER AUTOIMMUNE REGULATOR 277 1065 - GO:0000977(PANTHER)|GO:0003682(PANTHER)|GO:0005634(PANTHER)|GO:0042393(PANTHER)|GO:0045944(PANTHER)
Lcy5g0222 1098 MobiDBLite consensus disorder prediction 614 639 - -
Lcy5g0222 1098 Pfam Reverse transcriptase-like 108 233 IPR002156 GO:0003676(InterPro)|GO:0004523(InterPro)
Lcy5g0222 1098 SMART PHD_3 816 873 IPR001965 -
Lcy5g0222 1098 SMART PHD_3 737 778 IPR001965 -
Lcy5g0222 1098 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 967 1060 IPR016181 -
Lcy5g0222 1098 SUPERFAMILY FYVE/PHD zinc finger 815 870 IPR011011 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy5g0222 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy5g0222 Lcy-Chr5:2137720 Lcy5g0338 Lcy-Chr5:3388195 6.00E-131 dispersed
Lcy5g0222 Lcy-Chr5:2137720 Lcy8g1947 Lcy-Chr8:45690168 2.19E-172 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lcy5g0222 . 272 1061 PHD Transcription Factor Family AT3G53680 54.0 2.2e-241 832.8
Lcy7g0866 . 452 578 PHD Transcription Factor Family AT3G53680 55.1 6.1e-37 153.7
Lcy8g1832 . 322 448 PHD Transcription Factor Family AT3G53680 53.9 1.0e-36 152.9
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005462 1 2 0 1 1 1 2 1 1 1 1 1 3 1 1 2 1 2 2 1 1 1 1 1 1 1 1 5 1 1 40
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
20048 None None None None Lcy TR