Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy5g0233 ATGCCGAGAAAAGGAATGAGGAGTCTCCTTTTCCAGTTCTCGTCGCCGTCGAATTCCATTTCGAGGTATTCGATCACCTCGTCGCCGTCGAGAACTCCGGCCTTGACTCCACGCCGAAGCTTCAACGACGCGATGATCGAACAGAGCGTCGAATCTGCTGCGGCGATTATCATGAAATGGAATCCGGATTCTTCCACTTACGCGAAGGTTACTTCGATGTTCTATGAAGATAAACGAGAAGCCATGCAGTTCATTAAGCGAGTGAATGATCTTCAGAAGGCGATGCATCTGATGGTTTCCGAAGATTCTGGTTCGGCTCCGGAAAGGCTTGTTTACGCTCAAGGATTGATGGAAATGGCCATGAAGCGACTTCAGAAGGAGTTTTATCAGATTCTCTCGATGAATCGCGCTCATCTCGATCCGGAATCTGTTTCCACTCGGTCGTCTCGCTGCTCCACCAGATCGAGCACTTCCGTTGATTTCGACGAGGAAGGAACCCTAGACGAGGAAATCCAAGTCGTAGGGGACTCAATCTCTGAAGTTGAGCAAGTTTCTTTCAATGTCATGGAGGATTTGCGCGTCATAGCTGAGTGCATGATCTCCTCTGGCTACGCTAAAGAGTGCGTTAGTATGTATAAAGTGATTCGAAAATCGATTATCGATGAAGGTGTTTACCGGCTCGGACTTGAGAAATTGAGCCCTTCGCGAATCAACAAGATGGATTGGGAGGTGCTTGATCTTAAAATCAAGAACTGGTTGGATGCAATCAAACTAGCAATTCGAACGCTGTTCGTTGGCGAGCGAATTCTCTGCGACCATGTGTTTTCCTCTTCTGAATCGATTAGTGAATCCTGTTTTGCTGATATATCCAGAGAAGGCGCTTTGCTTCTGTTCGGATTCCCCGAACTTGTTGCTAAGAGTAAGAAATCGCCGGAAAAAATGTTCCGTGTTCTTGATATGTACTCATCAATCGCCGAAAACTGGCCGGAGATCGAAACGATTTTCTCCTCCGAGTCCACATCTGTAGTTCGATCTCAAGCTCTGAACTCACTCGCGAAACTCGCCGAGTTAGTCCGCGCGATCGTAATGGATCTCGAGTTGTCGATTCAGAAAAATTCATCCAAATCGCCAGTCGCTGGCGGTGGCGTTCATTCATTGACGCTTCTCTCGATGAATTACCTCACCTTCCTCGCCGATTACGGCAACGTTTTGACGGATATTTTCGCCGATTGGATTCCGCCGGAGAAATCCTCTCTCGATCAAATTTTCTTCAGCAGTTCAGAATCCGACGAATCTCCAACGGCTTCTGCAATCTCCTTACGATTCGGATGGCTAATTCTAGTCCTCCTCTGCAAACTCGACAGCAAAGCGAAACGCTACAAAGACGTTTCACTCTCGTATCTCTTCCTCGCTAACAATCTTCAACACATCGTCTCTAAAGTCCGATCGTCGAATCTTCAGTACCTTCTCGGCGACGAGTGGATCACGAAGCACGAGGTGAAAATAAGGCAATTCGCGATCAAGTACGAGGCGTTGGCTTGGGGCAGAGTCTTCGATTCCTTGCCGGAGAATCCAACTGCGAAATTTTCACAGGAGGAAGCCAAAGAAATCTTCCGGAACTTCAATATGGCATTCCAAGAAACTCATCGGAAACAGAAATCCTTCTTCATTCCCGATTCAAAGCTTCGAGACGAAGTTAAACTATCAATCGGTAGAAAGCTCGTGTCGTTCTATGGAGAATTTTTCAGAGCGCAAAAAGCTTACGCCGGTGGTGATGAAAAGCCGTACATCAGATTCTCGCCGGAGGATATCGGTAACTATCTTTCCGATCTCTATTTTGAGCCGTCCGATTGGGCGAGCGTTTCGACCTCGTCGCCGTCGTCGACCTCCTCCTCTCACCGACGGGAACTGGGACCCCGGTAA 1923 47.89 MPRKGMRSLLFQFSSPSNSISRYSITSSPSRTPALTPRRSFNDAMIEQSVESAAAIIMKWNPDSSTYAKVTSMFYEDKREAMQFIKRVNDLQKAMHLMVSEDSGSAPERLVYAQGLMEMAMKRLQKEFYQILSMNRAHLDPESVSTRSSRCSTRSSTSVDFDEEGTLDEEIQVVGDSISEVEQVSFNVMEDLRVIAECMISSGYAKECVSMYKVIRKSIIDEGVYRLGLEKLSPSRINKMDWEVLDLKIKNWLDAIKLAIRTLFVGERILCDHVFSSSESISESCFADISREGALLLFGFPELVAKSKKSPEKMFRVLDMYSSIAENWPEIETIFSSESTSVVRSQALNSLAKLAELVRAIVMDLELSIQKNSSKSPVAGGGVHSLTLLSMNYLTFLADYGNVLTDIFADWIPPEKSSLDQIFFSSSESDESPTASAISLRFGWLILVLLCKLDSKAKRYKDVSLSYLFLANNLQHIVSKVRSSNLQYLLGDEWITKHEVKIRQFAIKYEALAWGRVFDSLPENPTAKFSQEEAKEIFRNFNMAFQETHRKQKSFFIPDSKLRDEVKLSIGRKLVSFYGEFFRAQKAYAGGDEKPYIRFSPEDIGNYLSDLYFEPSDWASVSTSSPSSTSSSHRRELGPR 640
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 2247427 2249349 + Maker00033504 Lcy5g0233 632048
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy5g0233 640 FunFam Exocyst subunit Exo70 family protein 67 619 - -
Lcy5g0233 640 Gene3D Exocyst complex component Exo70 56 618 - -
Lcy5g0233 640 SUPERFAMILY Cullin repeat-like 53 612 IPR016159 -
Lcy5g0233 640 Pfam Exocyst complex component Exo70 N-terminal 50 133 - -
Lcy5g0233 640 PANTHER EXOCYST COMPLEX PROTEIN EXO70 48 613 IPR004140 GO:0000145(InterPro)|GO:0000145(PANTHER)|GO:0006887(InterPro)|GO:0006887(PANTHER)
Lcy5g0233 640 Pfam Exo70 exocyst complex subunit C-terminal 250 610 IPR046364 GO:0000145(InterPro)|GO:0005546(InterPro)|GO:0006887(InterPro)
Lcy5g0233 640 MobiDBLite consensus disorder prediction 618 640 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy5g0233 Lcy-Chr5:2247427 Lcy5g2120 Lcy-Chr5:44244463 8.08E-85 dispersed
Lcy1g1416 Lcy-Chr1:13712512 Lcy5g0233 Lcy-Chr5:2247427 4.67E-177 wgd
Lcy5g0233 Lcy-Chr5:2247427 Lcy7g0784 Lcy-Chr7:7538992 2.53E-171 wgd
Lcy5g0233 Lcy-Chr5:2247427 Lcy8g1841 Lcy-Chr8:44721348 3.19E-217 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy5g0233 K07195 - csv:101208543 1064.29