Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lcy5g0241 | ATGGCCGCCCTCTCCGCCCTCTCTCCGCCGCATCTCTCCGATCTCTCCCACTCCATCTTCTCCGACATCCACCACCGCCGCCGCCGCCTCACCTTCATCCTCTCCTCCCCAACCCTCTTCTCCCTCACTCTCCGCCACCTCAATTCCCTCTCCCTCTCCCACAAATCTCTCCTCATCGCCCGCTTCCTTCTCTCCGCCCTCCGCCGCCTCTCCCGCCCCTTCCAGCCGCCGTCCAAGTCCCTCCCCCACCACCCCTCCACCGCCGCCGTCACCCCCCGGGACCTCGACGCCGCTGTCCTTCTCCTCCTCCTCTGCGAGGTCCGACAGCACAGTCCCACCGCCCTCCAAACTCCGATCACCAAATGGCGATCGACCCTCTGCAGAATCTACTCCGATTCCCTCTTGACGGTCTCCGGCGTCGCCACCGGCGGCGCCGGCGTTCTTATTCCGTACATTGAGACGGTGGCGAGGTGCTGGAAGTTCGTGGGGTTCGTCGGGAGCTGCAGCGGCGGGAAGGCCCGGAGAGAGGTGGCGGCGTCGCCGGTGGCGGTGGTGGAGCTGCCGTCGGTGGCGGTGGGCGGCGGGGCGGCGGTGGAATGTGTGATTTGTAAAGAGGAGATGAACGAAGGGAGAGACGCGTGTCAATTGCCTTGTGAACACTTATTCCATTGGCTCTGTATTCTGCCATGGCTGAGGAAGAGGAACACGTGTCCCTGTTGCAGGTTTCAGCTTCCCACCGATGACATTTTCGGCGAGATCCAACGGCTCTGGGAGATCCTCCTCAAGGTGGGCTCCACGTCTGATGGAGATCAACGTCCAGGATTGAATGGTCGCATGGAATTAGGATAG | 849 | 62.78 | MAALSALSPPHLSDLSHSIFSDIHHRRRRLTFILSSPTLFSLTLRHLNSLSLSHKSLLIARFLLSALRRLSRPFQPPSKSLPHHPSTAAVTPRDLDAAVLLLLLCEVRQHSPTALQTPITKWRSTLCRIYSDSLLTVSGVATGGAGVLIPYIETVARCWKFVGFVGSCSGGKARREVAASPVAVVELPSVAVGGGAAVECVICKEEMNEGRDACQLPCEHLFHWLCILPWLRKRNTCPCCRFQLPTDDIFGEIQRLWEILLKVGSTSDGDQRPGLNGRMELG | 282 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 5 | 2313680 | 2314528 | + | Maker00033503 | Lcy5g0241 | 632056 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lcy5g0241 | 282 | SUPERFAMILY | RING/U-box | 194 | 247 | - | - | |
| Lcy5g0241 | 282 | CDD | RING-H2_PA-TM-RING | 199 | 241 | - | - | |
| Lcy5g0241 | 282 | PANTHER | E3 UBIQUITIN-PROTEIN LIGASE PRAJA | 174 | 246 | - | GO:0005737(PANTHER)|GO:0016567(PANTHER)|GO:0061630(PANTHER) | |
| Lcy5g0241 | 282 | Pfam | Ring finger domain | 199 | 241 | IPR001841 | - | |
| Lcy5g0241 | 282 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 193 | 251 | IPR013083 | - | |
| Lcy5g0241 | 282 | SMART | ring_2 | 200 | 240 | IPR001841 | - | |
| Lcy5g0241 | 282 | ProSiteProfiles | Zinc finger RING-type profile. | 200 | 241 | IPR001841 | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Lcy5g0241 | Lcy-Chr5:2313680 | Lcy5g2351 | Lcy-Chr5:46351474 | 2.33E-13 | dispersed | |
| Lcy5g0241 | Lcy-Chr5:2313680 | Lcy7g0898 | Lcy-Chr7:9031150 | 2.26E-13 | transposed |
Pathway information