Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy5g0241 ATGGCCGCCCTCTCCGCCCTCTCTCCGCCGCATCTCTCCGATCTCTCCCACTCCATCTTCTCCGACATCCACCACCGCCGCCGCCGCCTCACCTTCATCCTCTCCTCCCCAACCCTCTTCTCCCTCACTCTCCGCCACCTCAATTCCCTCTCCCTCTCCCACAAATCTCTCCTCATCGCCCGCTTCCTTCTCTCCGCCCTCCGCCGCCTCTCCCGCCCCTTCCAGCCGCCGTCCAAGTCCCTCCCCCACCACCCCTCCACCGCCGCCGTCACCCCCCGGGACCTCGACGCCGCTGTCCTTCTCCTCCTCCTCTGCGAGGTCCGACAGCACAGTCCCACCGCCCTCCAAACTCCGATCACCAAATGGCGATCGACCCTCTGCAGAATCTACTCCGATTCCCTCTTGACGGTCTCCGGCGTCGCCACCGGCGGCGCCGGCGTTCTTATTCCGTACATTGAGACGGTGGCGAGGTGCTGGAAGTTCGTGGGGTTCGTCGGGAGCTGCAGCGGCGGGAAGGCCCGGAGAGAGGTGGCGGCGTCGCCGGTGGCGGTGGTGGAGCTGCCGTCGGTGGCGGTGGGCGGCGGGGCGGCGGTGGAATGTGTGATTTGTAAAGAGGAGATGAACGAAGGGAGAGACGCGTGTCAATTGCCTTGTGAACACTTATTCCATTGGCTCTGTATTCTGCCATGGCTGAGGAAGAGGAACACGTGTCCCTGTTGCAGGTTTCAGCTTCCCACCGATGACATTTTCGGCGAGATCCAACGGCTCTGGGAGATCCTCCTCAAGGTGGGCTCCACGTCTGATGGAGATCAACGTCCAGGATTGAATGGTCGCATGGAATTAGGATAG 849 62.78 MAALSALSPPHLSDLSHSIFSDIHHRRRRLTFILSSPTLFSLTLRHLNSLSLSHKSLLIARFLLSALRRLSRPFQPPSKSLPHHPSTAAVTPRDLDAAVLLLLLCEVRQHSPTALQTPITKWRSTLCRIYSDSLLTVSGVATGGAGVLIPYIETVARCWKFVGFVGSCSGGKARREVAASPVAVVELPSVAVGGGAAVECVICKEEMNEGRDACQLPCEHLFHWLCILPWLRKRNTCPCCRFQLPTDDIFGEIQRLWEILLKVGSTSDGDQRPGLNGRMELG 282
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
5 2313680 2314528 + Maker00033503 Lcy5g0241 632056
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Lcy5g0241 282 SUPERFAMILY RING/U-box 194 247 - -
Lcy5g0241 282 CDD RING-H2_PA-TM-RING 199 241 - -
Lcy5g0241 282 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 174 246 - GO:0005737(PANTHER)|GO:0016567(PANTHER)|GO:0061630(PANTHER)
Lcy5g0241 282 Pfam Ring finger domain 199 241 IPR001841 -
Lcy5g0241 282 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 193 251 IPR013083 -
Lcy5g0241 282 SMART ring_2 200 240 IPR001841 -
Lcy5g0241 282 ProSiteProfiles Zinc finger RING-type profile. 200 241 IPR001841 -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy5g0241 Lcy-Chr5:2313680 Lcy5g2351 Lcy-Chr5:46351474 2.33E-13 dispersed
Lcy5g0241 Lcy-Chr5:2313680 Lcy7g0898 Lcy-Chr7:9031150 2.26E-13 transposed
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy5g0241 - - - 0.0