Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy5g0243 ATGGTTAAACCCTGCTGGAAACCTCATGATGATGACGATTCGAACGGACGAGTTGATGGATTGTTGTGGTCTAAGGATCTGGGGCATCATGTTTATGGACAATTCTCCATGGCAGTAATCCAAGCTAATAATGTGGTGGAAGATCAAAGCCAGCTTGAATCTGGGGCATTGAGTATGTCCAATCCAGGTCCACAGGGGACCTTCGTCGGAGTTTATGATGGTCATGGTGGAACCGAAGCTTCACGGAATTTTAAATTCCCACGAGCTTATTTTGATGTGTCTGTGGTTTTTCGAAGTGCAGGATATGCATCTTTGCACCAAAACATATCAGAAAACGTTATCAGGAAGGCTTTTGCAGCAACAGAAGAGGGGTTTCTCTCTCTTGTCCAGAAACAGTGGCTAAATGAACCAAAGATTGCATCTGCTGGATCATGTTGTTTGGTGGGAATCATATGCAATGGACAGCTATATATTGCAAATGCAGGCGATTCGCGGGTAGTGCTAGGGAGAACTGAGAGAGCCACTAGAGAAGTCATCGCCATTCAATTGTCCGCAGAGCACAATGCAAGCATAGAGTCAGTGAGAGATGAACTTCGGATGGTTCATCCAGATGATCCTCAGATTGTGATCCTGAAACACAATGTTTGGCGTGTTAAAGGTCTCATACAGGTTTCAAGATCCATTGGTGATGCATATTTGAAAAAGGCAAAGTTCAACAGGCCTCCTCTGCCGCCTAAATTTCAACTGCCTGAGCCATTTTACAAACCGATCCTCATCGCAGAACCATCAATACTGGTACACAAACTCCGCCCAGATGATCAATATTTAATATTTGCTTCTGATGGCCTGTGGGAACACCTTAGCAACCAGAAGGCTGTTGACATCGTCAACAGCTATCCTCGAAATGGAATAGCAAGGAGACTTGTCAAGGCTGCACTTCGAGAAGCAGCTAAAAAAAGAGAGATGAGATATTCAGACCTGAAAAAGATAGATAGAGGTGTGAGAAGGCATTTCCACGATGACATTTCTGTTGTAGTTGTGTTCTTAGATCCTCATTTGATCAATGGTAGGCCTTCCCCTTGTTCCTTGTCAATCAGAGGAGGAGAAGGTCTCCCTTCGTCAGCAAACTCGTAG 1134 44.44 MVKPCWKPHDDDDSNGRVDGLLWSKDLGHHVYGQFSMAVIQANNVVEDQSQLESGALSMSNPGPQGTFVGVYDGHGGTEASRNFKFPRAYFDVSVVFRSAGYASLHQNISENVIRKAFAATEEGFLSLVQKQWLNEPKIASAGSCCLVGIICNGQLYIANAGDSRVVLGRTERATREVIAIQLSAEHNASIESVRDELRMVHPDDPQIVILKHNVWRVKGLIQVSRSIGDAYLKKAKFNRPPLPPKFQLPEPFYKPILIAEPSILVHKLRPDDQYLIFASDGLWEHLSNQKAVDIVNSYPRNGIARRLVKAALREAAKKREMRYSDLKKIDRGVRRHFHDDISVVVVFLDPHLINGRPSPCSLSIRGGEGLPSSANS 377
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 2326871 2328603 + Maker00033123 Lcy5g0243 632058
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy5g0243 377 ProSiteProfiles PPM-type phosphatase domain profile. 34 349 IPR001932 -
Lcy5g0243 377 Pfam Protein phosphatase 2C 61 318 IPR001932 -
Lcy5g0243 377 ProSitePatterns PPM-type phosphatase domain signature. 68 76 IPR000222 GO:0043169(InterPro)
Lcy5g0243 377 FunFam Phosphatase 2C family protein 23 358 - -
Lcy5g0243 377 SMART PP2C_4 12 347 IPR001932 -
Lcy5g0243 377 CDD PP2Cc 32 349 IPR001932 -
Lcy5g0243 377 Gene3D - 24 356 IPR036457 -
Lcy5g0243 377 SUPERFAMILY PP2C-like 33 351 IPR036457 -
Lcy5g0243 377 PANTHER PROTEIN PHOSPHATASE 28 348 IPR015655 GO:0004722(PANTHER)|GO:0004722(InterPro)|GO:0006470(InterPro)|GO:0035970(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy5g0243 Lcy-Chr5:2326871 Lcy8g1268 Lcy-Chr8:39272682 1.25E-169 dispersed
Lcy5g0243 Lcy-Chr5:2326871 Lcy7g0798 Lcy-Chr7:7713865 5.33E-174 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy5g0243 K01102 - csv:101210750 678.707