Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lcy5g0247 | ATGGCTGCTCTAGAAGAGGTTCTACCTCCGTCGTTGGACGCCACCGCCGAACAACCTCCTCTGTTCGACGGAACTACCAGGTTGTATACTGCTTACATATGCCCATATGCTCAACGTGTGTGGATCACCCGGAATTACAAGGGACTACAAGACAAAATTAAGCTAGTTCCTCTCAACCTTTTAAATAGGCCTGACTGGTATAAGGAAAAAGTGTACCCTGTAAACAAGGTTCCATCTCTGGAACATAATGGGAAAGTTATTGGAGAAAGCCTTGATCTGATCAAATATGTTGATAGCAACTTTGAAGGACCTTCTCTTCTCCCAGATGATCCTGCTAAAAGAGAGTATGCTGAAGAGTTGCTATCCTACAGTGATACGTTTATTGGTGCAGTAGTCTCTTCATTTAAAGGTGACACTGCAAAGGAAGCAGGTGCTCAATTTGATTATTTGGAGAATGCTTTGCATAAATTCGATGGCCCCTTCCTCCTTGGGGAAATCAGTCAGGTGGATATAGCATACATTCCATTTATTGAAAGGTACCACATTGTCTTATTGGAGGTTCTCAAGATTGACATCACAGAAGGAAGGCCTAAACTAGCTGCATGGATTGAGGAGCTCAACAAGATTGATGCTTACAAGCAAACAAAATATGATCCTAAAGCCATTGTTGAACTTTACAAGAAGCGCTTCGTGGCTTGA | 699 | 42.49 | MAALEEVLPPSLDATAEQPPLFDGTTRLYTAYICPYAQRVWITRNYKGLQDKIKLVPLNLLNRPDWYKEKVYPVNKVPSLEHNGKVIGESLDLIKYVDSNFEGPSLLPDDPAKREYAEELLSYSDTFIGAVVSSFKGDTAKEAGAQFDYLENALHKFDGPFLLGEISQVDIAYIPFIERYHIVLLEVLKIDITEGRPKLAAWIEELNKIDAYKQTKYDPKAIVELYKKRFVA | 232 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 5 | 2336988 | 2343949 | + | Maker00033249 | Lcy5g0247 | 632062 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lcy5g0247 | 232 | ProSiteProfiles | Soluble glutathione S-transferase N-terminal domain profile. | 24 | 105 | IPR004045 | - | |
| Lcy5g0247 | 232 | Pfam | Glutathione S-transferase, N-terminal domain | 28 | 104 | IPR004045 | - | |
| Lcy5g0247 | 232 | Gene3D | Glutaredoxin | 1 | 102 | - | - | |
| Lcy5g0247 | 232 | CDD | GST_C_Lambda | 110 | 227 | - | - | |
| Lcy5g0247 | 232 | FunFam | Glutathione S-transferase L2, chloroplastic | 1 | 102 | - | - | |
| Lcy5g0247 | 232 | SFLD | Glutathione Transferase (cytosolic) | 27 | 207 | IPR040079 | - | |
| Lcy5g0247 | 232 | FunFam | Lambda class glutathione S-transferase | 103 | 232 | - | - | |
| Lcy5g0247 | 232 | Gene3D | - | 103 | 232 | - | - | |
| Lcy5g0247 | 232 | PANTHER | GLUTATHIONE S-TRANSFERASE L1 | 3 | 231 | IPR044629 | GO:0004364(PANTHER)|GO:0004364(InterPro)|GO:0010731(PANTHER) | |
| Lcy5g0247 | 232 | SUPERFAMILY | Thioredoxin-like | 19 | 106 | IPR036249 | - | |
| Lcy5g0247 | 232 | Pfam | Glutathione S-transferase, C-terminal domain | 144 | 204 | - | - | |
| Lcy5g0247 | 232 | SUPERFAMILY | GST C-terminal domain-like | 101 | 230 | IPR036282 | - | |
| Lcy5g0247 | 232 | SFLD | Main (cytGST) | 27 | 207 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Lcy5g0247 | Lcy-Chr5:2336988 | Lcy5g0249 | Lcy-Chr5:2351124 | 9.89E-130 | dispersed | |
| Lcy5g0245 | Lcy-Chr5:2332291 | Lcy5g0247 | Lcy-Chr5:2336988 | 5.35E-57 | proximal | |
| Lcy5g0246 | Lcy-Chr5:2334622 | Lcy5g0247 | Lcy-Chr5:2336988 | 5.27E-44 | tandem | |
| Lcy5g0247 | Lcy-Chr5:2336988 | Lcy5g0248 | Lcy-Chr5:2345315 | 1.98E-152 | tandem |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lcy5g0247 | K00799 | - | csv:101211241 | 419.468 |