Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy5g0248 ATGGCTGCCCTAGTGGAAGAGGTTCTACCTCCGACGTTGGAGGCCACCGCCGAACAGCCTCCTCTGTTCGACGGAACTACCAGGTCCGCTTTGTTGTATACTGCTTACATATGCCCATATGCTCAACGTGTGTGGATCACCCGGAATTACAAGGGACTACAAGATAAAATTAAGCTAGTTCCTCTCAACCTTTTTAATAGGCCGGACTGGTACAAGGAGAAAGTATACCCTGCAAACAAGGTGCCATCTCTGGAACATAACGGGAAAATTATTGGAGAAAGTCTTGATCTGGTCAAATATGTTGATAGCAACTTTGAAGGACCTTCTCTTCTCCCAGATGATCCTGCTAAAAGAGAGTACGCCGAAGAGTTGCTATCCTACACCGATACGTTTAATGGCGCAATAATCTCTTCTTTTAAAGGCGACATCGCAAAGGAAGCAGGTGCTCAATTTGATTACTTGGAAAATGCTTTGCAAAAATTCGATGGCCCCTTCTTCCTTGGAGAAATCAGTCAGGTGGATATAGCATACATTCCATTTGTTGAAAGGTTCCACATTGTCTTATTGGAAGCTCTCAAGATTGACATCACAGAAGGAAGGCCTAAACTAGCTGCATGGATTGAGGAGTTCAACAAGATTGATGCTTACAAACAAACAAAGGCAGACCCCAAGGCGGTTGTTGAAGCTTATACAAAGCGATTCTTGGTAACATTTGCTTTGCACAACTAA 729 43.76 MAALVEEVLPPTLEATAEQPPLFDGTTRSALLYTAYICPYAQRVWITRNYKGLQDKIKLVPLNLFNRPDWYKEKVYPANKVPSLEHNGKIIGESLDLVKYVDSNFEGPSLLPDDPAKREYAEELLSYTDTFNGAIISSFKGDIAKEAGAQFDYLENALQKFDGPFFLGEISQVDIAYIPFVERFHIVLLEALKIDITEGRPKLAAWIEEFNKIDAYKQTKADPKAVVEAYTKRFLVTFALHN 242
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 2345315 2349377 - Maker00033204 Lcy5g0248 632063
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy5g0248 242 SUPERFAMILY GST C-terminal domain-like 105 234 IPR036282 -
Lcy5g0248 242 CDD GST_C_Lambda 114 230 - -
Lcy5g0248 242 Pfam Glutathione S-transferase, N-terminal domain 32 108 IPR004045 -
Lcy5g0248 242 Gene3D Glutaredoxin 1 106 - -
Lcy5g0248 242 SUPERFAMILY Thioredoxin-like 30 110 IPR036249 -
Lcy5g0248 242 SFLD Main (cytGST) 32 210 - -
Lcy5g0248 242 SFLD Glutathione Transferase (cytosolic) 32 210 IPR040079 -
Lcy5g0248 242 PANTHER GLUTATHIONE S-TRANSFERASE L1 2 238 IPR044629 GO:0004364(PANTHER)|GO:0004364(InterPro)|GO:0010731(PANTHER)
Lcy5g0248 242 Pfam Glutathione S-transferase, C-terminal domain 146 208 - -
Lcy5g0248 242 ProSiteProfiles Soluble glutathione S-transferase N-terminal domain profile. 28 109 IPR004045 -
Lcy5g0248 242 FunFam Glutathione S-transferase L2, chloroplastic 1 106 - -
Lcy5g0248 242 FunFam Lambda class glutathione S-transferase 107 237 - -
Lcy5g0248 242 Gene3D - 107 238 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy5g0245 Lcy-Chr5:2332291 Lcy5g0248 Lcy-Chr5:2345315 1.45E-56 dispersed
Lcy5g0246 Lcy-Chr5:2334622 Lcy5g0248 Lcy-Chr5:2345315 9.77E-44 dispersed
Lcy5g0248 Lcy-Chr5:2345315 Lcy7g0799 Lcy-Chr7:7719744 6.77E-88 dispersed
Lcy5g0247 Lcy-Chr5:2336988 Lcy5g0248 Lcy-Chr5:2345315 1.98E-152 tandem
Lcy5g0248 Lcy-Chr5:2345315 Lcy5g0249 Lcy-Chr5:2351124 3.45E-140 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy5g0248 K00799 - csv:101211241 428.713