Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy5g0249 ATGCGACTTCACACCAGTCCGAAGAAAACTTCCTGCCGTCCGAGACTCAGACCGAAGCTTTGTTCATGTCACTTCTCGCGTTCGCTTTCCTCCGATTCCCTTAAATACTTCTCACTGAATCGGCCAGATTCTGCCGAACAACATCCATGGCGTCCGCCCAGTGAGGTGCAAGAGATTCCACCTCCGTCGTTGGATGCCACCGCCGAACAGCCTCCCCTGTTCGATGGAACTACCAGGTTCGTTTCGTTTTGCCCTAATAATCCGGGATTTCACTCGCGGTTCAATTTTTTTCTTTCATTGATTCTAATTGTTTTTGTTTTTCCTCTTAATCTGAAGGTTGTATATGCTTACATATGCCCTTATGCACAGCGTGTTTGGATCATCCGGAATTTGAAGGGACTGCAAGATAAAATCAAGCTAGTTCCTCTCAACCTTTTTAATAGGCCTTCCTGGTATAAGGAGAAAGTATACTCTGTAAACAAGGTGCCATCTCTTGAACACAATGGAAAAGTTATTGGAGAAAGTCTTGATCTGCTCAAATATATTGATAGCAACTTTGAAGAGCCTTCTCTTCTTCCAGATGACTCTGGTAAAATAGAGTATGCCGAAGAGTTGATATCCTACAGCGAAACATTTAATGGCGCAATAATCTCTGCGTTTAAAGGTGACATCGCCAAGGAAGCAGGTGCTCAATTTGATTACTTGGAAAACGCTTTGCAAAAATTTGATGGCCCCTTCCTACTTGGAGAAATCAGTCAGGTGGATATAGCATACATTCCATTTGTTGAAAGGTTCCAAGTTTTCTTATTAGAGGCTCTAAAGTATGATATCACAGAAGGAAGGCCTAAACTAACTGCATGGATTGAGGAGTTCAACAAGATCGATGCGTACAAACAAACAAAAGTCGATCCCAAGCTGGTCGTTGAAGTTTATACAAAGCGGTTCTTGGTAACATTTGCTTTGCACTTCATTCATATAAAATGCGATGTTCTTAAAGAATCTATTATCAATGCTCGTTTGCTAACCAGGCTAAGAAAGAATGCCAAGGGGGTTGTGTATTTCCATATAACGAATAAGCAGTCCGACATGTCGACGATGAATTTTGGCGTCTATACTTGTATTTGTTTTCTATGCATTTTGGTAGAGTCTAGTGTGATTAGTTTGTGTAAGTCTATGTCTTTTGAGTAA 1188 41.25 MRLHTSPKKTSCRPRLRPKLCSCHFSRSLSSDSLKYFSLNRPDSAEQHPWRPPSEVQEIPPPSLDATAEQPPLFDGTTRFVSFCPNNPGFHSRFNFFLSLILIVFVFPLNLKVVYAYICPYAQRVWIIRNLKGLQDKIKLVPLNLFNRPSWYKEKVYSVNKVPSLEHNGKVIGESLDLLKYIDSNFEEPSLLPDDSGKIEYAEELISYSETFNGAIISAFKGDIAKEAGAQFDYLENALQKFDGPFLLGEISQVDIAYIPFVERFQVFLLEALKYDITEGRPKLTAWIEEFNKIDAYKQTKVDPKLVVEVYTKRFLVTFALHFIHIKCDVLKESIINARLLTRLRKNAKGVVYFHITNKQSDMSTMNFGVYTCICFLCILVESSVISLCKSMSFE 395
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 2351124 2354523 + Maker00033387 Lcy5g0249 632064
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy5g0249 395 Gene3D Glutaredoxin 105 187 - -
Lcy5g0249 395 SFLD Glutathione Transferase (cytosolic) 112 291 IPR040079 -
Lcy5g0249 395 Gene3D - 188 319 - -
Lcy5g0249 395 SUPERFAMILY GST C-terminal domain-like 186 315 IPR036282 -
Lcy5g0249 395 PANTHER GLUTATHIONE S-TRANSFERASE L1 112 333 IPR044629 GO:0004364(PANTHER)|GO:0004364(InterPro)|GO:0010731(PANTHER)
Lcy5g0249 395 Pfam Glutathione S-transferase, C-terminal domain 227 289 - -
Lcy5g0249 395 CDD GST_C_Lambda 195 311 - -
Lcy5g0249 395 FunFam Lambda class glutathione S-transferase 188 318 - -
Lcy5g0249 395 Pfam Glutathione S-transferase, N-terminal domain 116 189 IPR004045 -
Lcy5g0249 395 ProSiteProfiles Soluble glutathione S-transferase N-terminal domain profile. 109 190 IPR004045 -
Lcy5g0249 395 SUPERFAMILY Thioredoxin-like 110 191 IPR036249 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy5g0247 Lcy-Chr5:2336988 Lcy5g0249 Lcy-Chr5:2351124 9.89E-130 dispersed
Lcy5g0249 Lcy-Chr5:2351124 Lcy7g0799 Lcy-Chr7:7719744 1.25E-73 dispersed
Lcy5g0248 Lcy-Chr5:2345315 Lcy5g0249 Lcy-Chr5:2351124 3.45E-140 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy5g0249 K00799 - csv:101211241 388.267