Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy5g0251 ATGATTTGGATTCCTTGTTCTGGAGATTCAAACAGGAAGGTCAAGTCCAAGAAATTGAAGAAGTTGGAATCTCAGAAGAGCCAAGTTGATTCGATCAAAGCTGCTTCAGATAAACTAAAGACAAGTTCCTCCTTCAGTGAAGCCTCAAAAGGTGGGGGATCTGAGCATATCAAGGCACAGATATTTTCATTCCGGGAGTTGGCAGCCGCTACCAAGAATTTTAGGGCAGACTGCCTTTTGGGCGAGGGAGGTTTCGGCAGAGTTTACAAAGGAAATTTGGAAAGCATCAATCAGGTAGTGGCTATCAAACAACTTGATCGCAATGGATTGCAAGGGAACAGGGAATTTCTCGTTGAAGTGTTGATGTTAAGCCTACTTCATCACCCAAATCTAGTCAATCTGATTGGTTATTGTGCTGATGGAGATCAAAGGCTTCTGATATATGAATATATGCCTCTAGGATCTTTAGATGACCATTTACATGACATTTCACCTGGTACAAAAGTACTAGATTGGAATACAAGAATGAAAATAGCTGCTGGGGCAGCACGAGGATTGGAATATTTGCACGACAAAGCTAGCCCACCAGTTATTTATCGAGATCTAAAAAGTTCCAACATTCTGCTTGATAAAGGTTATCATCCAAAGCTGTCTGATTTTGGATTGGCCAAACTTGGGCCTGTTGGGGACAATACACATGTGTCTACCAGAGTTATGGGCACTTACGGATATTGTGCTCCTGAATATGCAATGACTGGTCAGTTAACTCTCAAGTCAGATGTTTATAGCTTTGGTGTTGTCCTTTTAGAAATCATTACAGGCAGGAAAGCAATTGATGATTCAAGAGCTGCAGGGGAGCAAAATCTGGTTTCATGGGCACGACCATTATTTAAAGACCGTCTGAGATTTGCACAAATGGCAGATCCAATGCTTAGAGGCCAATACCCTTCAAGGGGTTTGTATCAGGCTCTTGCAATTGCAGCAATGTGTGTACAAGATCAACCAAATATGCGCCCTGTGATCGCCGATGTCGTCACAGCTTTATCTTATCTTGCTTCCCAACGATACGACCCTGGTCCGAACATCCCCCATGGCTCCCCTGCATCTGCTGCCTGTACTCCTCCAAGAAACAACAGAGATTCTGACAGGAAGCTTAATGGCGGTAGAAGATACGATAAAAATCACACTAGGAGACTATAA 1200 43.0 MIWIPCSGDSNRKVKSKKLKKLESQKSQVDSIKAASDKLKTSSSFSEASKGGGSEHIKAQIFSFRELAAATKNFRADCLLGEGGFGRVYKGNLESINQVVAIKQLDRNGLQGNREFLVEVLMLSLLHHPNLVNLIGYCADGDQRLLIYEYMPLGSLDDHLHDISPGTKVLDWNTRMKIAAGAARGLEYLHDKASPPVIYRDLKSSNILLDKGYHPKLSDFGLAKLGPVGDNTHVSTRVMGTYGYCAPEYAMTGQLTLKSDVYSFGVVLLEIITGRKAIDDSRAAGEQNLVSWARPLFKDRLRFAQMADPMLRGQYPSRGLYQALAIAAMCVQDQPNMRPVIADVVTALSYLASQRYDPGPNIPHGSPASAACTPPRNNRDSDRKLNGGRRYDKNHTRRL 399
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 2372887 2376598 - Maker00033419 Lcy5g0251 632066
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy5g0251 399 MobiDBLite consensus disorder prediction 7 38 - -
Lcy5g0251 399 SUPERFAMILY Protein kinase-like (PK-like) 57 346 IPR011009 -
Lcy5g0251 399 FunFam Serine/threonine-protein kinase PBS1 47 150 - -
Lcy5g0251 399 PANTHER OS07G0668900 PROTEIN 26 367 - -
Lcy5g0251 399 Pfam Protein tyrosine and serine/threonine kinase 78 347 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Lcy5g0251 399 SMART serkin_6 74 351 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy5g0251 399 ProSitePatterns Protein kinases ATP-binding region signature. 80 103 IPR017441 GO:0005524(InterPro)
Lcy5g0251 399 ProSitePatterns Serine/Threonine protein kinases active-site signature. 197 209 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Lcy5g0251 399 ProSiteProfiles Protein kinase domain profile. 74 351 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy5g0251 399 MobiDBLite consensus disorder prediction 358 399 - -
Lcy5g0251 399 FunFam Serine/threonine-protein kinase PBS1 151 364 - -
Lcy5g0251 399 Gene3D Transferase(Phosphotransferase) domain 1 151 358 - -
Lcy5g0251 399 Gene3D Phosphorylase Kinase; domain 1 46 150 - -
Lcy5g0251 399 CDD STKc_IRAK 80 348 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy3g1489 Lcy-Chr3:41721369 Lcy5g0251 Lcy-Chr5:2372887 7.25E-183 dispersed
Lcy5g0251 Lcy-Chr5:2372887 Lcy6g1411 Lcy-Chr6:20994050 2.56E-162 dispersed
Lcy5g0251 Lcy-Chr5:2372887 Lcy7g0802 Lcy-Chr7:7768612 1.18E-202 wgd
Lcy5g0251 Lcy-Chr5:2372887 Lcy8g1861 Lcy-Chr8:44913548 1.84E-162 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
65914 None None None None Lcy PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy5g0251 - - - 0.0