Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy5g0256 ATGGTTTTTGCAGAAGGTGGAGCTTCAAACCCAATGCTGGATCTTAACCTCGAAGTTGTTTCCTCTGAGTCGGCCTCCGATTCCGTTGAGATGGTTACTGAGAAGTTTCTGCAGTTTCCGGCGAACAGAATGGAGAGCGCCGGAAGTTTTAACTCGTCCTCCGTCGTTAACGGCGATCCTTCCGCCAGCACCACCGGCGACGAGGACTCCTCTTCCAACGCCGACGAGGCCTTCCCGTTCACTCTCGGTATAGATTACGCGGCTCAAGAAAGCTTAACGGCGAAATCACTCTGTATTTCCGATGACCATCGCGACCAGACGATGGAGCTCTTCCCGTTATCCGGCGGATTCTCTTCTGGTTCGAGTCCTCAGAAGCGGTGGCCGGAATTTGGTTGTGGCGGCGGCGTCGCGCCGGAGCGGCGAATAATGGCGCCACCGATGCAGCAACAGAATCAGCCGATGAGAAAGAACCGGCGAGGCCCAAGGTCTCGAAGTTCGCAGTATCGTGGGGTTACCTTTTATCGAAGAACAGGAAGATGGGAATCGCATATTTGGGACTGCGGGAAACAGGTTTATTTAGGTGGTTTCGATACTGCTCATGCTGCTGCTAGAGCATATGATCGAGCGGCGATCAAGTTTCGTGGGGTCGATGCAGATATCAATTTCAATGTCAGTGATTACGATGAAGACGTTAAACAGATGAGTAATTTCACGAAGGAAGAGTTTGTTCATATTCTTCGTCGCCATAGCACTGGATTTTCGAGGGGGAGCTCGAAGTACAGAGGAGTTACGCTGCATAAATGTGGGCGATGGGAAGCTCGGATGGGCCAGTTTCTGGGAAAGAAGTACATATATCTTGGTCTCTTTGACAGTGAGATTGAGGCTGCAAGGGCTTATGATAAGGCTGCCTTAAGATGCAATGGTAAGGAGGCTGTTACAAATTTTGAACCAAGTTCTTATGTGGCAGAGATGGCTTCCGAGACTGACACAGGAGGTTTGATCCTTCTCTGTTCATACACTTTGCTATTTGATCATTGTTATTTTGTCATTCTAGTTCTTAACAACCACGTTTGCTTGCTCGATCGGGTTATTCGTATCGTAACAATCGGTATCGAAAACCGTCTTGATTTCTTCCCATATGCAGAGAACAACCAGATTCTTGACCTGAACTTAGGAATTGCTCCCCCAAATCTTTCTGATGCCCAAAGTGAGAGCATTGGCATGTTTGGTAATGGTTTTCATCACGGCTCACACGACGTTCTCGTTGATAGAACAGCGTCGCTTGAGAACTCTGTTTCCCCAGCAATTAGATCATCTCAGCCATATGGCTTTGCAGTGCCTTCTAATTACCATTCTTCTTGGAATGTTTCAAATTCCAGTTTCTTTCCCATCTCCAGGGAAAGAGCAACAGAGATGAGGATGGGGGTTGGATCCTGGGAGTGGCAAATCCATGGCCACTCAAATGGAACAGCCTCTGTGCCACTCTTCTCTGCTGCAGCATCATCAGGATTCCCTTCTTTTTCTTCTTCTTCTTCAACTGCCATTTCTTCAGCTTCATCTGCTGTTGGTGAAATCCATTTCCCAGCTATCTTCCATCACCATGGCAACAACTTATCCAACTTCTACTGTAGGACTTGA 1638 47.92 MVFAEGGASNPMLDLNLEVVSSESASDSVEMVTEKFLQFPANRMESAGSFNSSSVVNGDPSASTTGDEDSSSNADEAFPFTLGIDYAAQESLTAKSLCISDDHRDQTMELFPLSGGFSSGSSPQKRWPEFGCGGGVAPERRIMAPPMQQQNQPMRKNRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGVDADINFNVSDYDEDVKQMSNFTKEEFVHILRRHSTGFSRGSSKYRGVTLHKCGRWEARMGQFLGKKYIYLGLFDSEIEAARAYDKAALRCNGKEAVTNFEPSSYVAEMASETDTGGLILLCSYTLLFDHCYFVILVLNNHVCLLDRVIRIVTIGIENRLDFFPYAENNQILDLNLGIAPPNLSDAQSESIGMFGNGFHHGSHDVLVDRTASLENSVSPAIRSSQPYGFAVPSNYHSSWNVSNSSFFPISRERATEMRMGVGSWEWQIHGHSNGTASVPLFSAAASSGFPSFSSSSSTAISSASSAVGEIHFPAIFHHHGNNLSNFYCRT 545
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 2409648 2413312 + Maker00033562 Lcy5g0256 632071
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy5g0256 545 ProSiteProfiles AP2/ERF domain profile. 259 316 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy5g0256 545 Gene3D AP2/ERF domain 166 225 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy5g0256 545 Gene3D AP2/ERF domain 258 317 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy5g0256 545 CDD AP2 258 318 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy5g0256 545 ProSiteProfiles AP2/ERF domain profile. 167 223 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy5g0256 545 SUPERFAMILY DNA-binding domain 258 317 IPR016177 GO:0003677(InterPro)
Lcy5g0256 545 SUPERFAMILY DNA-binding domain 166 225 IPR016177 GO:0003677(InterPro)
Lcy5g0256 545 MobiDBLite consensus disorder prediction 147 167 - -
Lcy5g0256 545 FunFam AP2-like ethylene-responsive transcription factor 166 225 - -
Lcy5g0256 545 Pfam AP2 domain 258 307 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy5g0256 545 Pfam AP2 domain 167 215 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy5g0256 545 MobiDBLite consensus disorder prediction 48 76 - -
Lcy5g0256 545 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 77 326 - -
Lcy5g0256 545 CDD AP2 166 225 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy5g0256 545 SMART rav1_2 167 229 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy5g0256 545 SMART rav1_2 259 322 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy5g0256 545 PRINTS Ethylene responsive element binding protein signature 260 271 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy5g0256 545 PRINTS Ethylene responsive element binding protein signature 298 318 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy1g0976 Lcy-Chr1:8598829 Lcy5g0256 Lcy-Chr5:2409648 2.46E-72 dispersed
Lcy5g0256 Lcy-Chr5:2409648 Lcy8g0777 Lcy-Chr8:28496511 5.52E-104 dispersed
Lcy1g1393 Lcy-Chr1:13480982 Lcy5g0256 Lcy-Chr5:2409648 5.82E-121 wgd
Lcy5g0256 Lcy-Chr5:2409648 Lcy7g0808 Lcy-Chr7:7870537 1.22E-75 wgd
Lcy5g0256 Lcy-Chr5:2409648 Lcy8g1865 Lcy-Chr8:44963989 7.92E-121 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
20051 None None None None Lcy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy5g0256 K09284 - csv:101211242 753.051