Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lcy5g0256 | ATGGTTTTTGCAGAAGGTGGAGCTTCAAACCCAATGCTGGATCTTAACCTCGAAGTTGTTTCCTCTGAGTCGGCCTCCGATTCCGTTGAGATGGTTACTGAGAAGTTTCTGCAGTTTCCGGCGAACAGAATGGAGAGCGCCGGAAGTTTTAACTCGTCCTCCGTCGTTAACGGCGATCCTTCCGCCAGCACCACCGGCGACGAGGACTCCTCTTCCAACGCCGACGAGGCCTTCCCGTTCACTCTCGGTATAGATTACGCGGCTCAAGAAAGCTTAACGGCGAAATCACTCTGTATTTCCGATGACCATCGCGACCAGACGATGGAGCTCTTCCCGTTATCCGGCGGATTCTCTTCTGGTTCGAGTCCTCAGAAGCGGTGGCCGGAATTTGGTTGTGGCGGCGGCGTCGCGCCGGAGCGGCGAATAATGGCGCCACCGATGCAGCAACAGAATCAGCCGATGAGAAAGAACCGGCGAGGCCCAAGGTCTCGAAGTTCGCAGTATCGTGGGGTTACCTTTTATCGAAGAACAGGAAGATGGGAATCGCATATTTGGGACTGCGGGAAACAGGTTTATTTAGGTGGTTTCGATACTGCTCATGCTGCTGCTAGAGCATATGATCGAGCGGCGATCAAGTTTCGTGGGGTCGATGCAGATATCAATTTCAATGTCAGTGATTACGATGAAGACGTTAAACAGATGAGTAATTTCACGAAGGAAGAGTTTGTTCATATTCTTCGTCGCCATAGCACTGGATTTTCGAGGGGGAGCTCGAAGTACAGAGGAGTTACGCTGCATAAATGTGGGCGATGGGAAGCTCGGATGGGCCAGTTTCTGGGAAAGAAGTACATATATCTTGGTCTCTTTGACAGTGAGATTGAGGCTGCAAGGGCTTATGATAAGGCTGCCTTAAGATGCAATGGTAAGGAGGCTGTTACAAATTTTGAACCAAGTTCTTATGTGGCAGAGATGGCTTCCGAGACTGACACAGGAGGTTTGATCCTTCTCTGTTCATACACTTTGCTATTTGATCATTGTTATTTTGTCATTCTAGTTCTTAACAACCACGTTTGCTTGCTCGATCGGGTTATTCGTATCGTAACAATCGGTATCGAAAACCGTCTTGATTTCTTCCCATATGCAGAGAACAACCAGATTCTTGACCTGAACTTAGGAATTGCTCCCCCAAATCTTTCTGATGCCCAAAGTGAGAGCATTGGCATGTTTGGTAATGGTTTTCATCACGGCTCACACGACGTTCTCGTTGATAGAACAGCGTCGCTTGAGAACTCTGTTTCCCCAGCAATTAGATCATCTCAGCCATATGGCTTTGCAGTGCCTTCTAATTACCATTCTTCTTGGAATGTTTCAAATTCCAGTTTCTTTCCCATCTCCAGGGAAAGAGCAACAGAGATGAGGATGGGGGTTGGATCCTGGGAGTGGCAAATCCATGGCCACTCAAATGGAACAGCCTCTGTGCCACTCTTCTCTGCTGCAGCATCATCAGGATTCCCTTCTTTTTCTTCTTCTTCTTCAACTGCCATTTCTTCAGCTTCATCTGCTGTTGGTGAAATCCATTTCCCAGCTATCTTCCATCACCATGGCAACAACTTATCCAACTTCTACTGTAGGACTTGA | 1638 | 47.92 | MVFAEGGASNPMLDLNLEVVSSESASDSVEMVTEKFLQFPANRMESAGSFNSSSVVNGDPSASTTGDEDSSSNADEAFPFTLGIDYAAQESLTAKSLCISDDHRDQTMELFPLSGGFSSGSSPQKRWPEFGCGGGVAPERRIMAPPMQQQNQPMRKNRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGVDADINFNVSDYDEDVKQMSNFTKEEFVHILRRHSTGFSRGSSKYRGVTLHKCGRWEARMGQFLGKKYIYLGLFDSEIEAARAYDKAALRCNGKEAVTNFEPSSYVAEMASETDTGGLILLCSYTLLFDHCYFVILVLNNHVCLLDRVIRIVTIGIENRLDFFPYAENNQILDLNLGIAPPNLSDAQSESIGMFGNGFHHGSHDVLVDRTASLENSVSPAIRSSQPYGFAVPSNYHSSWNVSNSSFFPISRERATEMRMGVGSWEWQIHGHSNGTASVPLFSAAASSGFPSFSSSSSTAISSASSAVGEIHFPAIFHHHGNNLSNFYCRT | 545 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
5 | 2409648 | 2413312 | + | Maker00033562 | Lcy5g0256 | 632071 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lcy5g0256 | 545 | ProSiteProfiles | AP2/ERF domain profile. | 259 | 316 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Lcy5g0256 | 545 | Gene3D | AP2/ERF domain | 166 | 225 | IPR036955 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Lcy5g0256 | 545 | Gene3D | AP2/ERF domain | 258 | 317 | IPR036955 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Lcy5g0256 | 545 | CDD | AP2 | 258 | 318 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Lcy5g0256 | 545 | ProSiteProfiles | AP2/ERF domain profile. | 167 | 223 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Lcy5g0256 | 545 | SUPERFAMILY | DNA-binding domain | 258 | 317 | IPR016177 | GO:0003677(InterPro) | |
Lcy5g0256 | 545 | SUPERFAMILY | DNA-binding domain | 166 | 225 | IPR016177 | GO:0003677(InterPro) | |
Lcy5g0256 | 545 | MobiDBLite | consensus disorder prediction | 147 | 167 | - | - | |
Lcy5g0256 | 545 | FunFam | AP2-like ethylene-responsive transcription factor | 166 | 225 | - | - | |
Lcy5g0256 | 545 | Pfam | AP2 domain | 258 | 307 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Lcy5g0256 | 545 | Pfam | AP2 domain | 167 | 215 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Lcy5g0256 | 545 | MobiDBLite | consensus disorder prediction | 48 | 76 | - | - | |
Lcy5g0256 | 545 | PANTHER | AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR | 77 | 326 | - | - | |
Lcy5g0256 | 545 | CDD | AP2 | 166 | 225 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Lcy5g0256 | 545 | SMART | rav1_2 | 167 | 229 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Lcy5g0256 | 545 | SMART | rav1_2 | 259 | 322 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Lcy5g0256 | 545 | PRINTS | Ethylene responsive element binding protein signature | 260 | 271 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Lcy5g0256 | 545 | PRINTS | Ethylene responsive element binding protein signature | 298 | 318 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lcy1g0976 | Lcy-Chr1:8598829 | Lcy5g0256 | Lcy-Chr5:2409648 | 2.46E-72 | dispersed | |
Lcy5g0256 | Lcy-Chr5:2409648 | Lcy8g0777 | Lcy-Chr8:28496511 | 5.52E-104 | dispersed | |
Lcy1g1393 | Lcy-Chr1:13480982 | Lcy5g0256 | Lcy-Chr5:2409648 | 5.82E-121 | wgd | |
Lcy5g0256 | Lcy-Chr5:2409648 | Lcy7g0808 | Lcy-Chr7:7870537 | 1.22E-75 | wgd | |
Lcy5g0256 | Lcy-Chr5:2409648 | Lcy8g1865 | Lcy-Chr8:44963989 | 7.92E-121 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
20051 | None | None | None | None | Lcy | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lcy5g0256 | K09284 | - | csv:101211242 | 753.051 |