Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy5g0257 ATGGGGACTAAGCTTCTGCTTCTGTTTCTTTTCTTTCTTTTGGATGTCTCCTTTGCTCAGATGCCAGGTTTTGTAAGTTTGGACTGTGGAGGTCAAGAAAGTTTCACTGATGATATTGGTCTGGAGTGGGTTCCAGATACTCAAGTTCGTTTTGGAGAAGCAATTAACATTTCTGTTGCAAATGAGACAAGGAAGCAATACATGACCTTAAGACATTTCCCTGCTGATTCCAGGAAGTACTGTTACTCACTTAATGTCACTAGTAGAACACGTTACCTTCTCAGAGCAACATTTTTATACGGTAACTTCGACAATAACAATGTGTATCCAAAATTTGACATTTCCCTTGGGGCAACTCACTGGTCAACAATTGTCATATCTGACGCCAACACCATAGAGGTTCGAGAGCTCATATTTTTGGCTTCAACTCCTACTGTGAGTGTTTGTTTGTCAAATGCTACAACTGGGCAGCCATTCATATCCACACTTGAGCTTCGACAATTTAATGGCTCTATCTACTATACTGAATTTGAGGATCAGTTTTACCTAAGTGTCTCAGCAAGGATAAATTTTGGAGCCGATTCCGAAGCACCAGTAAGGTATCCTGATGATCCATTTGACCGAATATGGGAGTCGGACTCTGTGAGAAAAGCAAATTACCTTGTTGATGTTGCTGCTGGTACGGAAAAAGTTTCCACTAAAATGCCAATAGATGTAGATAGAGACGAAAGACCACCTCAAAAAGTTATGCAGACTGCTGTAGTTGGCAGAAATGGTTCATTAACTTACCGGTTAAATTTGGATGGTTTTCCTGGCTTTGGATGGGCAGTCACCTACTTTGCAGAAATTGAAGACTTGAGTCCAACTGATACGAGAAAATTCAGGCTTGTACTTCCTGGCATGCCTGAAATCAGCAAAGCTGTAGTCAATATTGAAGAAAATGCTCAAGGACAATATCGACTTTATGAGCCTGGTTTTACCAACATAACCTTCCCTTTTGTATTATCTTTTCGGTTTGGGAAAACGTCAGATTCTTCATTGGGACCTCTGTTAAATGCTATGGAGATTAACAAGTATCTTGAAAAAAGTGATGGTTCAGTAGATGGGGCAATTGTTGCTAGTGTAACTTCAAAATTCTCATCTTTAGATTGGGATGAAGGTGGTGATCCATGCATGCCAGTTCCTTGGTCATGGTTGCAATGTAACTCTGATCCACGGCCAAGAATAGTTAAAATTTCATTGTCCAAAAAGAATTTGACGGGGAACATCCCTACAGACCTTGCAAAATTGAGCGGCTTAGTTGAATTGTGGCTTGATGGAAATTCATTCGTTGGTCCTATACCTGATTTTACTGGTTGCGTGGACTTGAAAATCCTCCATCTTGAGAACAACCAGTTGACTGGAGAGTTGCCTTCCTCTTTAGTAAATTTACCAAGTTTGCGGGAGCTGTATGTGCAGAATAACATGTTATCTGGAACAGTGCCTTCCAGTCTTCTCAATAAAAACCTAGTTATAAACTACTCTGGAAACATTAATCTTCATGAAGGGGGAAAAAAGAACCACATTTACATTATTGTGGGTTCAGTAATTGGTGCTGTTGTCCTGCTGTTGGCTACTGTGGTGTCTTGCTACTTTTTGCAAAGAGGAAGAAAGAAATATCGTGAACAAGATCTACTTGAAGAATCCATGTCTGTACAAAGATTAGCCTCTTCAAAGGGGGAAGCCCACAAGGAAACCGCACATTGCTTCAGTGCTAATGAAATTAAAGAAGCAACAAGAGGTTTTGAAAGAAAAATTGGGTCTGGAGGTTTTGGTGTTGTATACTACGGGAAATTAAATGATGGAAAAGAAATCGCAGTTAAAGTTTTGACGAGTAATTCCTTCCAGGGAAAGCGAGAATTTACAAATGAGGTGACTCTTCTTTCAAGGATTCATCACAGAAATCTCGTACAATTTCTTGGATATTGTCAAGAAGAAGAAAAAAGTATGCTTGTCTATGAGTTCATGCATAATGGAACTCTCAAAGAACATCTTTATGGTCCACTAACACGTGGAGAAACGATCAGTTGGATAAAGCGCCTTGAGATTGCTGAAGATGCTGCTAGAGGGATTGAATACCTTCATACAGGCTGTATACCAGCAATTATTCATAGGGACTTGAAAAGCAGTAATATTCTTCTTGACAGGCACATGAGAGCAAAAGTTTCAGATTTTGGTCTTTCAAAACTTGCGGTGGATGGCGTCTCCCACGTGTCCAGCATAGTTCGAGGAACTGTCGGATATTTGGATCCAGAGTATTACATCTCTCAGCAGTTGACAGACAAGAGCGATGTGTATAGCTTTGGTGTTATTCTTCTCGAGTTGATATCTGGTCAAGAAGCTATATCTAGCGTTAACTTCGGTGTTCATTGCCGCAACATCGTCCAGTGGGCAAAATTACACATCGAGAGCGGGGACATTCAAGGGATCATCGATCCATCGCTACGCAATGAGTATGACATTCAATCGATGTGGAAAATCGCGGAGAAAGCATTGATGTGTGTCCAGCCACATGGGCACCTGAGGCCATCCATATCTGAAGTGCTCAAGGAGATACAGGATTCAATTTTGATTGAAAGGGAACATACTGCAATTAGAGAAGGTAACTCTGATGACATGTCTAGAAACTCAGTCCATTCTATGAATATGGGATCTCTTGATTTGTGTGGAAATGAAAACTACGTGTCGTTTGACGAATCCATTGCTCGACCTACTGCAAGGTAG 2763 40.72 MGTKLLLLFLFFLLDVSFAQMPGFVSLDCGGQESFTDDIGLEWVPDTQVRFGEAINISVANETRKQYMTLRHFPADSRKYCYSLNVTSRTRYLLRATFLYGNFDNNNVYPKFDISLGATHWSTIVISDANTIEVRELIFLASTPTVSVCLSNATTGQPFISTLELRQFNGSIYYTEFEDQFYLSVSARINFGADSEAPVRYPDDPFDRIWESDSVRKANYLVDVAAGTEKVSTKMPIDVDRDERPPQKVMQTAVVGRNGSLTYRLNLDGFPGFGWAVTYFAEIEDLSPTDTRKFRLVLPGMPEISKAVVNIEENAQGQYRLYEPGFTNITFPFVLSFRFGKTSDSSLGPLLNAMEINKYLEKSDGSVDGAIVASVTSKFSSLDWDEGGDPCMPVPWSWLQCNSDPRPRIVKISLSKKNLTGNIPTDLAKLSGLVELWLDGNSFVGPIPDFTGCVDLKILHLENNQLTGELPSSLVNLPSLRELYVQNNMLSGTVPSSLLNKNLVINYSGNINLHEGGKKNHIYIIVGSVIGAVVLLLATVVSCYFLQRGRKKYREQDLLEESMSVQRLASSKGEAHKETAHCFSANEIKEATRGFERKIGSGGFGVVYYGKLNDGKEIAVKVLTSNSFQGKREFTNEVTLLSRIHHRNLVQFLGYCQEEEKSMLVYEFMHNGTLKEHLYGPLTRGETISWIKRLEIAEDAARGIEYLHTGCIPAIIHRDLKSSNILLDRHMRAKVSDFGLSKLAVDGVSHVSSIVRGTVGYLDPEYYISQQLTDKSDVYSFGVILLELISGQEAISSVNFGVHCRNIVQWAKLHIESGDIQGIIDPSLRNEYDIQSMWKIAEKALMCVQPHGHLRPSISEVLKEIQDSILIEREHTAIREGNSDDMSRNSVHSMNMGSLDLCGNENYVSFDESIARPTAR 920
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 2426376 2435537 + Maker00033279 Lcy5g0257 632072
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy5g0257 920 PANTHER OS07G0107800 PROTEIN-RELATED 453 873 - -
Lcy5g0257 920 SMART serkin_6 593 870 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy5g0257 920 ProSitePatterns Protein kinases ATP-binding region signature. 599 621 IPR017441 GO:0005524(InterPro)
Lcy5g0257 920 ProSitePatterns Serine/Threonine protein kinases active-site signature. 715 727 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Lcy5g0257 920 SUPERFAMILY Protein kinase-like (PK-like) 581 866 IPR011009 -
Lcy5g0257 920 Gene3D Ribonuclease Inhibitor 371 519 IPR032675 -
Lcy5g0257 920 Pfam Leucine Rich Repeat 479 499 IPR001611 GO:0005515(InterPro)
Lcy5g0257 920 Pfam Leucine Rich Repeat 456 477 IPR001611 GO:0005515(InterPro)
Lcy5g0257 920 Pfam Protein tyrosine and serine/threonine kinase 595 798 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Lcy5g0257 920 FunFam Leucine-rich repeat protein kinase family protein 369 519 - -
Lcy5g0257 920 FunFam LRR receptor-like serine/threonine-protein kinase IOS1 669 878 - -
Lcy5g0257 920 FunFam Leucine-rich repeat receptor-like protein kinase 571 668 - -
Lcy5g0257 920 CDD STKc_IRAK 599 866 - -
Lcy5g0257 920 Gene3D Transferase(Phosphotransferase) domain 1 669 889 - -
Lcy5g0257 920 Pfam Malectin-like domain 27 357 IPR024788 -
Lcy5g0257 920 ProSiteProfiles Protein kinase domain profile. 593 878 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy5g0257 920 SUPERFAMILY L domain-like 392 500 - -
Lcy5g0257 920 Gene3D Phosphorylase Kinase; domain 1 565 668 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy3g1380 Lcy-Chr3:40314744 Lcy5g0257 Lcy-Chr5:2426376 2.77E-121 dispersed
Lcy5g0257 Lcy-Chr5:2426376 Lcy7g0086 Lcy-Chr7:813779 2.39E-281 dispersed
Lcy5g0257 Lcy-Chr5:2426376 Lcy3g2167 Lcy-Chr3:48561035 3.45E-117 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
65915 None None None None Lcy PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy5g0257 - - - 0.0