Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy5g0258 ATGGCCGATGCTCCGACGAGCCCCGGCGGAGGAAGCCATGAGAGCGGCGAGCAGAGTCCGCGGTCTAATGTTCGGGAACAGGATAGGTTCCTTCCGATTGCGAATATTAGCAGGATCATGAAGAAGGCTCTTCCGGCTAATGGGAAGATTGCCAAGGATGCTAAGGAGACCGTACAGGAATGTGTATCGGAGTTCATCAGTTTTATTACCAGCGAGTACGGGAGTGATTTTGATAATCAATTGGCTAGTGATAAATGCCAAAGAGAAAAACGGAAGACGATTAATGGAGATGATTTGCTTTGGGCTATGGCTACTCTTGGATTTGAGGATTATATCGATCCGCTTAAAACCTACTTGACGAAATACAGAGAGGTACTCAGTCGGCTAATGCTCGTGCATTGTCGGCTATTCTATCACTATATGTTCTGTTGCTTTGATGAAGAACTGTTGAAGATAGAATTAACAGGCGACACTAAGGGGTCTGCCAAAGGTGGGGATGCGTCAGCTAAGAAAGAAGCTCATCCAACCTCTGGTGCTCAGTCACAAGCCCAGCATCTGATGGTTCCTATGCAAGGCACCGACTAA 585 47.18 MADAPTSPGGGSHESGEQSPRSNVREQDRFLPIANISRIMKKALPANGKIAKDAKETVQECVSEFISFITSEYGSDFDNQLASDKCQREKRKTINGDDLLWAMATLGFEDYIDPLKTYLTKYREVLSRLMLVHCRLFYHYMFCCFDEELLKIELTGDTKGSAKGGDASAKKEAHPTSGAQSQAQHLMVPMQGTD 194
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 2441316 2444746 + Maker00033397 Lcy5g0258 632073
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy5g0258 194 MobiDBLite consensus disorder prediction 161 194 - -
Lcy5g0258 194 MobiDBLite consensus disorder prediction 174 194 - -
Lcy5g0258 194 Gene3D Histone, subunit A 17 188 IPR009072 GO:0046982(InterPro)
Lcy5g0258 194 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 30 103 IPR003958 -
Lcy5g0258 194 SUPERFAMILY Histone-fold 27 126 IPR009072 GO:0046982(InterPro)
Lcy5g0258 194 FunFam Nuclear factor Y, subunit B1 20 128 - -
Lcy5g0258 194 MobiDBLite consensus disorder prediction 1 27 - -
Lcy5g0258 194 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 14 172 IPR027113 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0001228(InterPro)|GO:0006355(InterPro)|GO:0006357(PANTHER)|GO:0016602(PANTHER)|GO:0016602(InterPro)
Lcy5g0258 194 PRINTS CCAAT-binding transcription factor subunit A signature 86 104 - -
Lcy5g0258 194 PRINTS CCAAT-binding transcription factor subunit A signature 105 123 - -
Lcy5g0258 194 PRINTS CCAAT-binding transcription factor subunit A signature 58 76 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy5g0258 Lcy-Chr5:2441316 Lcy8g1350 Lcy-Chr8:40251945 8.88E-52 dispersed
Lcy5g0258 Lcy-Chr5:2441316 Lcy7g0811 Lcy-Chr7:7893024 2.41E-63 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
20052 None None None None Lcy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy5g0258 K08065 - csv:101212699 268.855