Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lcy5g0258 | ATGGCCGATGCTCCGACGAGCCCCGGCGGAGGAAGCCATGAGAGCGGCGAGCAGAGTCCGCGGTCTAATGTTCGGGAACAGGATAGGTTCCTTCCGATTGCGAATATTAGCAGGATCATGAAGAAGGCTCTTCCGGCTAATGGGAAGATTGCCAAGGATGCTAAGGAGACCGTACAGGAATGTGTATCGGAGTTCATCAGTTTTATTACCAGCGAGTACGGGAGTGATTTTGATAATCAATTGGCTAGTGATAAATGCCAAAGAGAAAAACGGAAGACGATTAATGGAGATGATTTGCTTTGGGCTATGGCTACTCTTGGATTTGAGGATTATATCGATCCGCTTAAAACCTACTTGACGAAATACAGAGAGGTACTCAGTCGGCTAATGCTCGTGCATTGTCGGCTATTCTATCACTATATGTTCTGTTGCTTTGATGAAGAACTGTTGAAGATAGAATTAACAGGCGACACTAAGGGGTCTGCCAAAGGTGGGGATGCGTCAGCTAAGAAAGAAGCTCATCCAACCTCTGGTGCTCAGTCACAAGCCCAGCATCTGATGGTTCCTATGCAAGGCACCGACTAA | 585 | 47.18 | MADAPTSPGGGSHESGEQSPRSNVREQDRFLPIANISRIMKKALPANGKIAKDAKETVQECVSEFISFITSEYGSDFDNQLASDKCQREKRKTINGDDLLWAMATLGFEDYIDPLKTYLTKYREVLSRLMLVHCRLFYHYMFCCFDEELLKIELTGDTKGSAKGGDASAKKEAHPTSGAQSQAQHLMVPMQGTD | 194 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
5 | 2441316 | 2444746 | + | Maker00033397 | Lcy5g0258 | 632073 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lcy5g0258 | 194 | MobiDBLite | consensus disorder prediction | 161 | 194 | - | - | |
Lcy5g0258 | 194 | MobiDBLite | consensus disorder prediction | 174 | 194 | - | - | |
Lcy5g0258 | 194 | Gene3D | Histone, subunit A | 17 | 188 | IPR009072 | GO:0046982(InterPro) | |
Lcy5g0258 | 194 | Pfam | Histone-like transcription factor (CBF/NF-Y) and archaeal histone | 30 | 103 | IPR003958 | - | |
Lcy5g0258 | 194 | SUPERFAMILY | Histone-fold | 27 | 126 | IPR009072 | GO:0046982(InterPro) | |
Lcy5g0258 | 194 | FunFam | Nuclear factor Y, subunit B1 | 20 | 128 | - | - | |
Lcy5g0258 | 194 | MobiDBLite | consensus disorder prediction | 1 | 27 | - | - | |
Lcy5g0258 | 194 | PANTHER | CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED | 14 | 172 | IPR027113 | GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0001228(InterPro)|GO:0006355(InterPro)|GO:0006357(PANTHER)|GO:0016602(PANTHER)|GO:0016602(InterPro) | |
Lcy5g0258 | 194 | PRINTS | CCAAT-binding transcription factor subunit A signature | 86 | 104 | - | - | |
Lcy5g0258 | 194 | PRINTS | CCAAT-binding transcription factor subunit A signature | 105 | 123 | - | - | |
Lcy5g0258 | 194 | PRINTS | CCAAT-binding transcription factor subunit A signature | 58 | 76 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lcy5g0258 | Lcy-Chr5:2441316 | Lcy8g1350 | Lcy-Chr8:40251945 | 8.88E-52 | dispersed | |
Lcy5g0258 | Lcy-Chr5:2441316 | Lcy7g0811 | Lcy-Chr7:7893024 | 2.41E-63 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
20052 | None | None | None | None | Lcy | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lcy5g0258 | K08065 | - | csv:101212699 | 268.855 |