Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy5g0260 ATGGAGCAAGCTTTTTCAGACTTCGACATAGCTGGAGATATCTTGGATTTGTACTTCCCTCGAACTGTCTTCACTGTCGAAAATGAATGGCTTAAGCTCATTTCTCAGCTCATTTTCTTCTTTTCTTCTCCGGCAGGTGGACGTCTCGCTTCACAGGCTATCGATGATGGTCGTGGCATCTTTATTTTGTCAATTGACTTTCAACAGTTCCGGAAGATTTGCGAGCAACATGAATTTTACCTAATGCTAGAGGAAAATCCTAAAGTTGCTCTCAAATGTATGAGTGCTGCACTTCACCAGGTAATGAGGGCCAAATGGGCGCACAATTTAGAAGATGTCGCAAAAATTCTAGTCCGGTTGCACAACTATTCAGAATCTATGCTTGCTTTGAAGAACTTGAAGGCAGCATATATTGACAAGCTTGTATCAGTGCGTGGTACAGTTGTTAAAGTTAGCACTGTCAAACCTTTGGTGGTGCAAATGAGTTTTGATTGCGCGAAGTGTAAAAGCAATATTACACGCATCTTTCCTGATGGTAAGTTTTCACCTCCATCGTTTTGTGAGTTGGATGGGTGTAAAAGCAAAACATTCAATCCCATTCGATCTACTGCTGAAGCAATCGACTTTCAAAAAATACGGTTGCAAGAGCTCACTAAATCTGATGACCATGAAGAAGGCAGGGTGCCTCGAACTGTAGAATGTGAACTGAGTGAAGATCTTGTTGACGCATGCATCCCTGGAGATGTTGTCACTGTTACTGGAATCATAAAAGTAATTAACAATTACATGGATATTGGAGGAGGAAAATCGAAGAGCAAAAATCAAGGATTTTACTATTTGTATCTGGAGGCTGTTTCAATAAAAAATTCTAAGTCACAATGTACACCTGAAGAGTTGCAAGATTCTAACTCTAACGTAAGAGCAACCGAGTTGCTTGATTTATTCTCATTCTCCCCAAGAGATTTGGAATTTATTGTGAAATTCTCTGGGGAATATGGTTCAGATGTCTTCCGTCAAATACTTCAATCTATATGTCCATCCATCTATGGACATGAACTTGTTAAAGCGGGAATAACACTAGCTTTATTTGGTGGTGTACGAAAGCATTCAAAAGACCAGAATAAAGTTCCTGTTAGAGGAGATATTCATGTCATAGTTGTTGGCGATCCTGGACTAGGCAAAAGTCAAATACTACAAGCGGCTGCAGCTGTTTCTCCACGTGGCATTTATGTTTGTGGTAATGCAACAACCAAAGCAGGCCTAACTGTAGCTGTTGTGAGGGATTCCATGACGAATGACTATGCTTTTGAGGCCGGGGCTATGGTACTTGCTGATGGTGGATTATGCTGTATAGATGAGTTCGATAAAATGTCTGCTGAACATCAGGCCCTACTAGAAGCCATGGAACAACAATGTGTATCTATTGCAAAAGCTGGACTGGTAGCAAGTCTATCAGCACGCACGTCTGTTTTAGCTGCAGCTAACCCTGTTGGTGGTCATTACAACCGGGCAAAAACTGTGAATGAAAACTTGAAGATGAGCGCCGCTCTTCTCTCCAGATTTGACTTAGTTTTTATATTGCTGGATAAACCTGACGAATTTCTAGATAAGAGAGTCTCGGAGCACATCATGTCGCTTCATGCTGGATATGGGGAACGCGCCTCTGCAGCAAAAAGACTACGTAAAGATATATCTCCGTTGGCTTTAAAGAATGTGGCAGTGGAGAATGATGGAAAAGGAGATGCTTGTTCAAGACGCCAATCTTTAGTTTCAAGACTGAGATTGGATCGAGCGAAAGATGGTGATTTTGTACCATTGCCTGGCCAGCTTCTTCGCAAATATATAGCCTATGCAAGAACTTTTGTGTTCCCCAGGATGTCAAAGCCAGCAGCAGACATCTTGCAGAAATTTTACTTACGACTGCGTGACCAGAATACATCAGCGGATGGTACACCAATTACAGCAAGGCAACTGGAAAGTCTGGTGAGGCTGGCAGAAGCTCGAGCACGGGTAGACCTCAGGGAAGAAATAACAGTACAAGATGCCATGGATGTGGTAGAAATAATGAAGGAATCCCTTTATGACAAGTATGTAGATGAACATGGTGTCCTGGATTTTGGTCGAAGTGGGGGAATGAGTCAACAGAAAGAAGCCAAGCGATTTTTGAGTGCACTCAACAAACAATCAGAGTTGCAGCAGAAAGATTGTTTCTCTATATCGGAAATATATAGCTTGGCAGATAGGATTGGCCTACGAGTACCAGACATCGATACCTTCATAGAAAATCTTAACAGTGTTGGATATCTGCTCAAGAAGGGACCAAAGACATACCAGGTGTTGTCCTCATCTTACACCAGTCAATCAACGAGGTCAAGAGGATAA 2382 42.02 MEQAFSDFDIAGDILDLYFPRTVFTVENEWLKLISQLIFFFSSPAGGRLASQAIDDGRGIFILSIDFQQFRKICEQHEFYLMLEENPKVALKCMSAALHQVMRAKWAHNLEDVAKILVRLHNYSESMLALKNLKAAYIDKLVSVRGTVVKVSTVKPLVVQMSFDCAKCKSNITRIFPDGKFSPPSFCELDGCKSKTFNPIRSTAEAIDFQKIRLQELTKSDDHEEGRVPRTVECELSEDLVDACIPGDVVTVTGIIKVINNYMDIGGGKSKSKNQGFYYLYLEAVSIKNSKSQCTPEELQDSNSNVRATELLDLFSFSPRDLEFIVKFSGEYGSDVFRQILQSICPSIYGHELVKAGITLALFGGVRKHSKDQNKVPVRGDIHVIVVGDPGLGKSQILQAAAAVSPRGIYVCGNATTKAGLTVAVVRDSMTNDYAFEAGAMVLADGGLCCIDEFDKMSAEHQALLEAMEQQCVSIAKAGLVASLSARTSVLAAANPVGGHYNRAKTVNENLKMSAALLSRFDLVFILLDKPDEFLDKRVSEHIMSLHAGYGERASAAKRLRKDISPLALKNVAVENDGKGDACSRRQSLVSRLRLDRAKDGDFVPLPGQLLRKYIAYARTFVFPRMSKPAADILQKFYLRLRDQNTSADGTPITARQLESLVRLAEARARVDLREEITVQDAMDVVEIMKESLYDKYVDEHGVLDFGRSGGMSQQKEAKRFLSALNKQSELQQKDCFSISEIYSLADRIGLRVPDIDTFIENLNSVGYLLKKGPKTYQVLSSSYTSQSTRSRG 793
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 2459963 2469982 - Maker00033265 Lcy5g0260 632075

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lcy5g0260 793 SMART mcm 126 694 IPR031327 GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro)
Lcy5g0260 793 ProSiteProfiles MCM family domain profile. 336 543 IPR001208 GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro)
Lcy5g0260 793 Gene3D - 157 207 - -
Lcy5g0260 793 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 346 699 IPR027417 -
Lcy5g0260 793 Pfam MCM P-loop domain 334 547 IPR001208 GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro)
Lcy5g0260 793 Gene3D - 314 702 IPR027417 -
Lcy5g0260 793 CDD MCM8_WHD 715 780 - -
Lcy5g0260 793 Pfam MCM OB domain 130 259 IPR033762 -
Lcy5g0260 793 PRINTS Mini-chromosome maintenance (MCM) protein family signature 439 453 IPR001208 GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro)
Lcy5g0260 793 PRINTS Mini-chromosome maintenance (MCM) protein family signature 466 479 IPR001208 GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro)
Lcy5g0260 793 PRINTS Mini-chromosome maintenance (MCM) protein family signature 379 394 IPR001208 GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro)
Lcy5g0260 793 PRINTS Mini-chromosome maintenance (MCM) protein family signature 517 525 IPR001208 GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro)
Lcy5g0260 793 PRINTS Mini-chromosome maintenance (MCM) protein family signature 490 502 IPR001208 GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro)
Lcy5g0260 793 CDD MCM8 340 692 - -
Lcy5g0260 793 FunFam DNA helicase MCM8 isoform X1 157 208 - -
Lcy5g0260 793 Coils Coil 451 471 - -
Lcy5g0260 793 Pfam MCM AAA-lid domain 610 693 IPR041562 -
Lcy5g0260 793 PANTHER DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER 62 778 IPR031327 GO:0003677(InterPro)|GO:0003697(PANTHER)|GO:0005524(InterPro)|GO:0005634(PANTHER)|GO:0017116(PANTHER)|GO:0032508(InterPro)|GO:0042555(PANTHER)
Lcy5g0260 793 SMART AAA_5 380 532 IPR003593 GO:0016887(InterPro)
Lcy5g0260 793 Gene3D - 130 260 IPR012340 -
Lcy5g0260 793 SUPERFAMILY Nucleic acid-binding proteins 59 260 IPR012340 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy5g0260 K10737 - - csv:101211972 1451.42
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy4g0233 Lcy-Chr4:2879184 Lcy5g0260 Lcy-Chr5:2459963 1.02E-15 dispersed
Lcy4g2051 Lcy-Chr4:47083917 Lcy5g0260 Lcy-Chr5:2459963 1.56E-78 dispersed
Lcy5g0260 Lcy-Chr5:2459963 Lcy5g1003 Lcy-Chr5:18784881 6.13E-23 dispersed
Lcy5g0260 Lcy-Chr5:2459963 Lcy11g0915 Lcy-Chr11:27405421 1.02E-82 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lcy6g1462 . 102 791 Core DNA Replication Machinery Family AT4G14700 66.2 1.6e-265 912.9
Lcy13g0853 . 521 1078 Core DNA Replication Machinery Family AT4G14700 65.9 5.9e-215 745.0
Lcy11g0308 . 52 573 Core DNA Replication Machinery Family AT4G14700 64.1 3.5e-191 666.0
Lcy11g0309 . 102 270 Core DNA Replication Machinery Family AT4G14700 69.7 2.7e-66 251.1
Lcy6g1462 . 102 791 Core DNA Replication Machinery Family AT4G12620 67.8 2.0e-271 932.6
Lcy13g0853 . 521 1067 Core DNA Replication Machinery Family AT4G12620 68.3 2.3e-219 759.6
Lcy11g0308 . 52 573 Core DNA Replication Machinery Family AT4G12620 65.8 1.5e-194 677.2
Lcy11g0309 . 102 270 Core DNA Replication Machinery Family AT4G12620 71.7 4.4e-69 260.4
Lcy13g2044 . 49 410 Core DNA Replication Machinery Family AT2G37560 66.0 1.6e-140 496.5
Lcy12g1380 . 15 441 Core DNA Replication Machinery Family AT5G16690 53.1 5.7e-121 432.6
Lcy7g1035 . 9 425 Core DNA Replication Machinery Family AT2G01120 57.0 3.9e-133 472.2
Lcy13g0701 . 307 834 Core DNA Replication Machinery Family AT4G29910 55.8 6.0e-166 581.6
Lcy7g1942 . 39 318 Core DNA Replication Machinery Family AT1G26840 64.4 2.6e-93 339.3
Lcy8g0029 . 1 226 Core DNA Replication Machinery Family AT1G26840 66.2 1.7e-79 293.5
Lcy4g0064 . 1 808 Core DNA Replication Machinery Family AT1G79150 59.5 1.7e-249 859.8
Lcy11g0915 . 10 962 Core DNA Replication Machinery Family AT1G44900 73.5 0.0e+00 1336.6
Lcy1g0195 . 1 599 Core DNA Replication Machinery Family AT5G46280 78.4 5.2e-266 914.1
Lcy1g0019 . 6 222 Core DNA Replication Machinery Family AT5G46280 52.5 3.4e-60 230.3
Lcy3g0984 . 1 846 Core DNA Replication Machinery Family AT2G16440 73.4 0.0e+00 1182.9
Lcy4g2051 . 1 736 Core DNA Replication Machinery Family AT2G07690 78.4 0.0e+00 1117.4
Lcy1g0019 . 3 297 Core DNA Replication Machinery Family AT2G07690 50.2 1.7e-72 271.6
Lcy7g1690 . 15 183 Core DNA Replication Machinery Family AT2G07690 62.7 1.0e-61 235.7
Lcy5g1003 . 15 171 Core DNA Replication Machinery Family AT2G07690 64.3 1.4e-61 235.3
Lcy1g0019 . 1 490 Core DNA Replication Machinery Family AT5G44635 70.1 1.3e-191 667.5
Lcy1g0020 . 1 305 Core DNA Replication Machinery Family AT5G44635 78.4 5.2e-137 486.1
Lcy3g1810 . 11 741 Core DNA Replication Machinery Family AT4G02060 83.6 0.0e+00 1210.3
Lcy8g1760 . 63 463 Core DNA Replication Machinery Family AT2G29680 62.3 6.5e-143 505.0
Lcy13g0711 . 63 325 Core DNA Replication Machinery Family AT2G29680 66.5 3.6e-101 366.3
Lcy8g1760 . 68 433 Core DNA Replication Machinery Family AT1G07270 64.8 1.8e-134 476.9
Lcy13g0711 . 37 326 Core DNA Replication Machinery Family AT1G07270 63.4 4.4e-101 365.9
Lcy3g1361 . 1 594 Core DNA Replication Machinery Family AT3G25100 77.4 1.3e-259 892.9
Lcy5g0260 . 12 792 Core DNA Replication Machinery Family AT3G09660 74.1 0.0e+00 1121.7
Lcy4g0233 . 10 357 Core DNA Replication Machinery Family AT2G14050 71.1 3.0e-145 513.1
Lcy4g0231 . 5 222 Core DNA Replication Machinery Family AT2G14050 75.1 1.3e-95 348.2
Lcy8g1254 . 1 445 Core DNA Replication Machinery Family AT2G20980 52.3 4.5e-115 412.1
Lcy9g1541 . 1 958 Core DNA Replication Machinery Family AT1G77320 50.2 1.4e-258 890.2
Lcy3g2057 . 1 235 Core DNA Replication Machinery Family AT1G80190 59.7 1.7e-70 263.1
Lcy2g2423 . 148 333 Core DNA Replication Machinery Family AT3G12530 57.5 3.3e-55 211.8
Lcy10g2194 . 1 186 Core DNA Replication Machinery Family AT1G19080 68.3 1.7e-69 259.6
Lcy10g2194 . 1 186 Core DNA Replication Machinery Family AT3G55490 68.3 1.7e-69 259.6
Lcy3g0553 . 1 164 Core DNA Replication Machinery Family AT5G49010 62.0 7.1e-50 194.5
Lcy3g0554 . 1 164 Core DNA Replication Machinery Family AT5G49010 62.0 7.1e-50 194.5
Lcy13g1039 . 231132 231295 Core DNA Replication Machinery Family AT5G49010 62.0 7.1e-50 194.5
Lcy11g1982 . 1 164 Core DNA Replication Machinery Family AT5G49010 61.4 1.2e-49 193.7
Lcy8g0834 . 1 1558 Core DNA Replication Machinery Family AT5G67100 60.4 0.0e+00 1764.6
Lcy7g0076 . 38 680 Core DNA Replication Machinery Family AT1G67630 56.7 1.8e-200 696.4
Lcy3g1510 . 1 519 Core DNA Replication Machinery Family AT1G67320 62.4 3.1e-182 635.6
Lcy9g0019 . 68 497 Core DNA Replication Machinery Family AT1G67320 65.2 1.8e-166 583.2
Lcy2g2216 . 472 791 Core DNA Replication Machinery Family AT5G41880 63.9 2.8e-121 433.0
Lcy9g0348 . 30 357 Core DNA Replication Machinery Family AT5G41880 62.3 3.4e-119 426.0
Lcy1g1200 . 1 687 Core DNA Replication Machinery Family AT5G63960 74.3 4.5e-306 1048.1
Lcy5g0600 . 1 421 Core DNA Replication Machinery Family AT2G42120 76.7 7.2e-199 690.6
Lcy3g1510 . 1 519 Core DNA Replication Machinery Family AT1G67320 62.4 3.1e-182 635.6
Lcy9g0019 . 68 497 Core DNA Replication Machinery Family AT1G67320 65.2 1.8e-166 583.2
Lcy8g1984 . 55 2378 Core DNA Replication Machinery Family AT1G08260 64.0 0.0e+00 2844.7
Lcy5g2343 . 5 2065 Core DNA Replication Machinery Family AT1G08260 64.7 0.0e+00 2698.3
Lcy8g1984 . 63 2485 Core DNA Replication Machinery Family AT2G27120 60.9 0.0e+00 2817.0
Lcy5g2343 . 28 2184 Core DNA Replication Machinery Family AT2G27120 62.1 0.0e+00 2676.4
Lcy2g2119 . 7 518 Core DNA Replication Machinery Family AT5G22110 50.4 8.2e-143 504.6
Lcy3g0749 . 1 278 Core DNA Replication Machinery Family AT5G22110 69.4 1.8e-105 380.6
Lcy8g2029 . 290 1066 Core DNA Replication Machinery Family AT5G22010 69.9 2.0e-299 1025.8
Lcy6g1987 . 1 368 Core DNA Replication Machinery Family AT1G63160 82.4 7.2e-167 583.9
Lcy1g1725 . 1 345 Core DNA Replication Machinery Family AT5G27740 78.3 8.8e-155 543.9
Lcy9g1544 . 41 361 Core DNA Replication Machinery Family AT1G21690 75.7 1.1e-138 490.3
Lcy10g1238 . 1 364 Core DNA Replication Machinery Family AT1G77470 75.6 1.6e-154 543.1
Lcy4g2255 . 26 680 Core DNA Replication Machinery Family AT2G06510 62.4 1.2e-244 843.2
Lcy6g2277 . 81 747 Core DNA Replication Machinery Family AT2G06510 52.5 2.4e-200 696.0
Lcy2g0510 . 1 638 Core DNA Replication Machinery Family AT5G08020 66.7 7.5e-247 850.5
Lcy6g2277 . 57 856 Core DNA Replication Machinery Family AT5G45400 52.7 2.1e-234 809.7
Lcy4g2255 . 210 682 Core DNA Replication Machinery Family AT5G45400 59.4 3.0e-169 593.2
Lcy2g0510 . 1 633 Core DNA Replication Machinery Family AT5G61000 65.8 1.4e-243 839.7
Lcy6g2277 . 57 842 Core DNA Replication Machinery Family AT4G19130 56.0 1.6e-233 806.6
Lcy2g2397 . 5 113 Core DNA Replication Machinery Family AT5G26680 76.0 9.3e-47 185.3
Lcy11g1151 . 1 298 Core DNA Replication Machinery Family AT2G25100 66.8 2.6e-114 409.1
Lcy8g1937 . 1 776 Core DNA Replication Machinery Family AT1G08130 63.6 2.5e-279 958.7
Lcy8g1937 . 197 776 Core DNA Replication Machinery Family AT1G49250 66.3 1.3e-228 790.0
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009089 1 3 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 2 1 34