Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy5g0260 ATGGAGCAAGCTTTTTCAGACTTCGACATAGCTGGAGATATCTTGGATTTGTACTTCCCTCGAACTGTCTTCACTGTCGAAAATGAATGGCTTAAGCTCATTTCTCAGCTCATTTTCTTCTTTTCTTCTCCGGCAGGTGGACGTCTCGCTTCACAGGCTATCGATGATGGTCGTGGCATCTTTATTTTGTCAATTGACTTTCAACAGTTCCGGAAGATTTGCGAGCAACATGAATTTTACCTAATGCTAGAGGAAAATCCTAAAGTTGCTCTCAAATGTATGAGTGCTGCACTTCACCAGGTAATGAGGGCCAAATGGGCGCACAATTTAGAAGATGTCGCAAAAATTCTAGTCCGGTTGCACAACTATTCAGAATCTATGCTTGCTTTGAAGAACTTGAAGGCAGCATATATTGACAAGCTTGTATCAGTGCGTGGTACAGTTGTTAAAGTTAGCACTGTCAAACCTTTGGTGGTGCAAATGAGTTTTGATTGCGCGAAGTGTAAAAGCAATATTACACGCATCTTTCCTGATGGTAAGTTTTCACCTCCATCGTTTTGTGAGTTGGATGGGTGTAAAAGCAAAACATTCAATCCCATTCGATCTACTGCTGAAGCAATCGACTTTCAAAAAATACGGTTGCAAGAGCTCACTAAATCTGATGACCATGAAGAAGGCAGGGTGCCTCGAACTGTAGAATGTGAACTGAGTGAAGATCTTGTTGACGCATGCATCCCTGGAGATGTTGTCACTGTTACTGGAATCATAAAAGTAATTAACAATTACATGGATATTGGAGGAGGAAAATCGAAGAGCAAAAATCAAGGATTTTACTATTTGTATCTGGAGGCTGTTTCAATAAAAAATTCTAAGTCACAATGTACACCTGAAGAGTTGCAAGATTCTAACTCTAACGTAAGAGCAACCGAGTTGCTTGATTTATTCTCATTCTCCCCAAGAGATTTGGAATTTATTGTGAAATTCTCTGGGGAATATGGTTCAGATGTCTTCCGTCAAATACTTCAATCTATATGTCCATCCATCTATGGACATGAACTTGTTAAAGCGGGAATAACACTAGCTTTATTTGGTGGTGTACGAAAGCATTCAAAAGACCAGAATAAAGTTCCTGTTAGAGGAGATATTCATGTCATAGTTGTTGGCGATCCTGGACTAGGCAAAAGTCAAATACTACAAGCGGCTGCAGCTGTTTCTCCACGTGGCATTTATGTTTGTGGTAATGCAACAACCAAAGCAGGCCTAACTGTAGCTGTTGTGAGGGATTCCATGACGAATGACTATGCTTTTGAGGCCGGGGCTATGGTACTTGCTGATGGTGGATTATGCTGTATAGATGAGTTCGATAAAATGTCTGCTGAACATCAGGCCCTACTAGAAGCCATGGAACAACAATGTGTATCTATTGCAAAAGCTGGACTGGTAGCAAGTCTATCAGCACGCACGTCTGTTTTAGCTGCAGCTAACCCTGTTGGTGGTCATTACAACCGGGCAAAAACTGTGAATGAAAACTTGAAGATGAGCGCCGCTCTTCTCTCCAGATTTGACTTAGTTTTTATATTGCTGGATAAACCTGACGAATTTCTAGATAAGAGAGTCTCGGAGCACATCATGTCGCTTCATGCTGGATATGGGGAACGCGCCTCTGCAGCAAAAAGACTACGTAAAGATATATCTCCGTTGGCTTTAAAGAATGTGGCAGTGGAGAATGATGGAAAAGGAGATGCTTGTTCAAGACGCCAATCTTTAGTTTCAAGACTGAGATTGGATCGAGCGAAAGATGGTGATTTTGTACCATTGCCTGGCCAGCTTCTTCGCAAATATATAGCCTATGCAAGAACTTTTGTGTTCCCCAGGATGTCAAAGCCAGCAGCAGACATCTTGCAGAAATTTTACTTACGACTGCGTGACCAGAATACATCAGCGGATGGTACACCAATTACAGCAAGGCAACTGGAAAGTCTGGTGAGGCTGGCAGAAGCTCGAGCACGGGTAGACCTCAGGGAAGAAATAACAGTACAAGATGCCATGGATGTGGTAGAAATAATGAAGGAATCCCTTTATGACAAGTATGTAGATGAACATGGTGTCCTGGATTTTGGTCGAAGTGGGGGAATGAGTCAACAGAAAGAAGCCAAGCGATTTTTGAGTGCACTCAACAAACAATCAGAGTTGCAGCAGAAAGATTGTTTCTCTATATCGGAAATATATAGCTTGGCAGATAGGATTGGCCTACGAGTACCAGACATCGATACCTTCATAGAAAATCTTAACAGTGTTGGATATCTGCTCAAGAAGGGACCAAAGACATACCAGGTGTTGTCCTCATCTTACACCAGTCAATCAACGAGGTCAAGAGGATAA 2382 42.02 MEQAFSDFDIAGDILDLYFPRTVFTVENEWLKLISQLIFFFSSPAGGRLASQAIDDGRGIFILSIDFQQFRKICEQHEFYLMLEENPKVALKCMSAALHQVMRAKWAHNLEDVAKILVRLHNYSESMLALKNLKAAYIDKLVSVRGTVVKVSTVKPLVVQMSFDCAKCKSNITRIFPDGKFSPPSFCELDGCKSKTFNPIRSTAEAIDFQKIRLQELTKSDDHEEGRVPRTVECELSEDLVDACIPGDVVTVTGIIKVINNYMDIGGGKSKSKNQGFYYLYLEAVSIKNSKSQCTPEELQDSNSNVRATELLDLFSFSPRDLEFIVKFSGEYGSDVFRQILQSICPSIYGHELVKAGITLALFGGVRKHSKDQNKVPVRGDIHVIVVGDPGLGKSQILQAAAAVSPRGIYVCGNATTKAGLTVAVVRDSMTNDYAFEAGAMVLADGGLCCIDEFDKMSAEHQALLEAMEQQCVSIAKAGLVASLSARTSVLAAANPVGGHYNRAKTVNENLKMSAALLSRFDLVFILLDKPDEFLDKRVSEHIMSLHAGYGERASAAKRLRKDISPLALKNVAVENDGKGDACSRRQSLVSRLRLDRAKDGDFVPLPGQLLRKYIAYARTFVFPRMSKPAADILQKFYLRLRDQNTSADGTPITARQLESLVRLAEARARVDLREEITVQDAMDVVEIMKESLYDKYVDEHGVLDFGRSGGMSQQKEAKRFLSALNKQSELQQKDCFSISEIYSLADRIGLRVPDIDTFIENLNSVGYLLKKGPKTYQVLSSSYTSQSTRSRG 793
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 2459963 2469982 - Maker00033265 Lcy5g0260 632075
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy5g0260 793 SMART mcm 126 694 IPR031327 GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro)
Lcy5g0260 793 ProSiteProfiles MCM family domain profile. 336 543 IPR001208 GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro)
Lcy5g0260 793 Gene3D - 157 207 - -
Lcy5g0260 793 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 346 699 IPR027417 -
Lcy5g0260 793 Pfam MCM P-loop domain 334 547 IPR001208 GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro)
Lcy5g0260 793 Gene3D - 314 702 IPR027417 -
Lcy5g0260 793 CDD MCM8_WHD 715 780 - -
Lcy5g0260 793 Pfam MCM OB domain 130 259 IPR033762 -
Lcy5g0260 793 PRINTS Mini-chromosome maintenance (MCM) protein family signature 439 453 IPR001208 GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro)
Lcy5g0260 793 PRINTS Mini-chromosome maintenance (MCM) protein family signature 466 479 IPR001208 GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro)
Lcy5g0260 793 PRINTS Mini-chromosome maintenance (MCM) protein family signature 379 394 IPR001208 GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro)
Lcy5g0260 793 PRINTS Mini-chromosome maintenance (MCM) protein family signature 517 525 IPR001208 GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro)
Lcy5g0260 793 PRINTS Mini-chromosome maintenance (MCM) protein family signature 490 502 IPR001208 GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro)
Lcy5g0260 793 CDD MCM8 340 692 - -
Lcy5g0260 793 FunFam DNA helicase MCM8 isoform X1 157 208 - -
Lcy5g0260 793 Coils Coil 451 471 - -
Lcy5g0260 793 Pfam MCM AAA-lid domain 610 693 IPR041562 -
Lcy5g0260 793 PANTHER DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER 62 778 IPR031327 GO:0003677(InterPro)|GO:0003697(PANTHER)|GO:0005524(InterPro)|GO:0005634(PANTHER)|GO:0017116(PANTHER)|GO:0032508(InterPro)|GO:0042555(PANTHER)
Lcy5g0260 793 SMART AAA_5 380 532 IPR003593 GO:0016887(InterPro)
Lcy5g0260 793 Gene3D - 130 260 IPR012340 -
Lcy5g0260 793 SUPERFAMILY Nucleic acid-binding proteins 59 260 IPR012340 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy4g0233 Lcy-Chr4:2879184 Lcy5g0260 Lcy-Chr5:2459963 1.02E-15 dispersed
Lcy4g2051 Lcy-Chr4:47083917 Lcy5g0260 Lcy-Chr5:2459963 1.56E-78 dispersed
Lcy5g0260 Lcy-Chr5:2459963 Lcy5g1003 Lcy-Chr5:18784881 6.13E-23 dispersed
Lcy5g0260 Lcy-Chr5:2459963 Lcy11g0915 Lcy-Chr11:27405421 1.02E-82 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy5g0260 K10737 - csv:101211972 1451.42