Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy5g0277 ATGGCGGCCGCGAATCGTTTCAGCCTTCTTCTTCTTCTTCTTTTCCTTTTGCAGATCTTTTATTCAGGAAGGAGTGAACTGCAAATGAATTATTATGCGAAAAGTTGCCCAAAAGCTGAAGAAATTATAAAACAGCAAGTTACCGATCTCTACTATGAACATGGAAACACTGCCGTTTCGTGGCTCAGAAACCTCTTCCATGACTGCGTTGTTAAGTCTTGTGATGCATCTCTACTATTGGAGACGGTGGTGGGAGTGGAATCAGAGAAAGATTCAGACAGAAGCTTTGGAATGAGAAATTTCAAATATGTAAATAAGATCAAAGCCGCCGTTGAAAGTGAATGCCCTCTCACTGTTTCTTGCGCCGATATTGTTGCCCTTTCCGCTAGAGATGGCATAGTCATGTTGAAAGGACCTCATATAGAGATGAAAACAGGGAGAAGAGATAGCAAGATGAGTTATTCACATCTTGTTGAAGAGTTGGTTCCAAGTCACAATGAATCTCTTGTAAATGTTCTCTCTAGGTTTAACTCCATTGGCATTGATACTGAAGCAACTGTTGCTCTTCTAGGAGCTCACTCGGTAGGTCGAGTTCATTGCGTCAACCTAGTGGAGAGGCTCTACCCAACCGTCGATCCAACCATCGATCCAGAATACGCCAAATACCTAAAACTCCGATGCCCAACGCCGAATCCCGACCCAACCGCAGTATTATACTCGAGAAACGACCGTGAGACACCGATGATTCTTGACAACATGTACTACAGCAATGTGCTGAAACACAAGGGCTTGCTGATTGTGGACCAAGAATTGGTCTCTAATCCTGTCACTCTTCCATATGTGAAGAAATTTGCTGCTGACATTCAGTATTTTCATGCCCAATTTTCCAGGGGAATTCGTTTGTTGTCGGAGAATAATCCACTCATTGGAGATCAAGGCGAGATTAGAAAAGATTGTCGCTTTGCTAATTAA 972 42.9 MAAANRFSLLLLLLFLLQIFYSGRSELQMNYYAKSCPKAEEIIKQQVTDLYYEHGNTAVSWLRNLFHDCVVKSCDASLLLETVVGVESEKDSDRSFGMRNFKYVNKIKAAVESECPLTVSCADIVALSARDGIVMLKGPHIEMKTGRRDSKMSYSHLVEELVPSHNESLVNVLSRFNSIGIDTEATVALLGAHSVGRVHCVNLVERLYPTVDPTIDPEYAKYLKLRCPTPNPDPTAVLYSRNDRETPMILDNMYYSNVLKHKGLLIVDQELVSNPVTLPYVKKFAADIQYFHAQFSRGIRLLSENNPLIGDQGEIRKDCRFAN 323
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 2596675 2601170 - Maker00033470 Lcy5g0277 632092
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy5g0277 323 PRINTS Haem peroxidase superfamily signature 58 72 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy5g0277 323 PRINTS Haem peroxidase superfamily signature 137 149 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy5g0277 323 PRINTS Haem peroxidase superfamily signature 185 200 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy5g0277 323 PRINTS Haem peroxidase superfamily signature 119 136 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy5g0277 323 PRINTS Haem peroxidase superfamily signature 243 258 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy5g0277 323 ProSiteProfiles Plant heme peroxidase family profile. 26 323 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy5g0277 323 PANTHER - 12 322 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy5g0277 323 CDD secretory_peroxidase 26 321 IPR033905 GO:0004601(InterPro)|GO:0042744(InterPro)
Lcy5g0277 323 FunFam Peroxidase 30 174 - -
Lcy5g0277 323 Gene3D - 30 320 - -
Lcy5g0277 323 Pfam Peroxidase 44 287 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy5g0277 323 FunFam Peroxidase 163 302 - -
Lcy5g0277 323 PRINTS Plant peroxidase signature 257 274 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy5g0277 323 PRINTS Plant peroxidase signature 36 55 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy5g0277 323 PRINTS Plant peroxidase signature 184 196 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy5g0277 323 PRINTS Plant peroxidase signature 99 112 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy5g0277 323 PRINTS Plant peroxidase signature 137 152 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy5g0277 323 PRINTS Plant peroxidase signature 241 256 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy5g0277 323 PRINTS Plant peroxidase signature 118 128 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy5g0277 323 PRINTS Plant peroxidase signature 60 80 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy5g0277 323 SUPERFAMILY Heme-dependent peroxidases 26 323 IPR010255 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy5g0277 323 Gene3D Peroxidase, domain 2 164 303 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy5g0277 Lcy-Chr5:2596675 Lcy1g0670 Lcy-Chr1:5730655 1.88E-66 dispersed
Lcy5g2024 Lcy-Chr5:43257386 Lcy5g0277 Lcy-Chr5:2596675 8.19E-129 transposed
Lcy1g1385 Lcy-Chr1:13414689 Lcy5g0277 Lcy-Chr5:2596675 5.56E-117 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy5g0277 K00430 - csv:101215428 579.711