Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy5g0279 ATGGGCCCTTTTTCTGTGGGCTTGGCAAATTTGGGCTGTCCGCGCACAGCTTCTGGAGATATTCGAAACCGCTCTCACCGCCATAGGTCACCGGAAAACCGACCGGAGCACGGAGGCGAAGAATCGAGGATGAGCGTGATTGACCTGTTGACCAGAGTAGATGCGATCTGCCAGAAGTACGACAAATACGATGTAGAGAAGCAGAGGGATCTCAATGTCTCCGGCGATGATGCCTTTGCTCGACTCTATGCCACCGTCGAAGCCGACATTGAAGCCGCTCTCCAGAAAGCGGATGATGCTTCTAAAGAGAAGAATAGGGCGTCGGTGGTGGCGTTGAATGCGGAGATTCGTCGTACCAAGGCTCGATTACTGGAGGAGGTCCCCAAGTTGCAGAGATTGGCTGTAAAGAGGGTAAAAGGGCTATCAACTGAAGATCTTACCACTCGAAATGATTTGGTGCTTGCATTGCCGGATCGGATTCAAGCTATACCAGATGGGACTGCTACTGCAGCGAAGAAGAATGGTGGTTGGACATCCTCAGCTTCACGTACTGAAATAAAATTTGACTCAGATGGGCGATTTGATGATGAGTACTTCCAACACACTGAGGAGTCAAGCCAGTTCAGGCAAGAGTATGAAATGCGGAAAATGAAACAGGATCAAGGATTGGACATGATATCCGAAGGGTTGGATACTCTGAAGAACATGGCTCATGATATGAATGAGGAAATAGACAGGCAAGTTCCTTTGATGGACGAGATTGACACTAAGGTGGACAAAGCTGCATCTGACCTTAAAAACACCAATGTTAGATTAAAGGACACCGTTAACCAGCTAAGGTCCAGCAGAAATTTCTGTATTGATATTGTTTTGTTGTGTATAATCTTGGGTATTGCTGCCTATCTATACAACCAAGTGCAACTGAACTCTATTATGGAATGTGGAAAGTTTATGGTAGCATTACAAGTTCATGAGTCAGATCCTACCTAG 990 46.46 MGPFSVGLANLGCPRTASGDIRNRSHRHRSPENRPEHGGEESRMSVIDLLTRVDAICQKYDKYDVEKQRDLNVSGDDAFARLYATVEADIEAALQKADDASKEKNRASVVALNAEIRRTKARLLEEVPKLQRLAVKRVKGLSTEDLTTRNDLVLALPDRIQAIPDGTATAAKKNGGWTSSASRTEIKFDSDGRFDDEYFQHTEESSQFRQEYEMRKMKQDQGLDMISEGLDTLKNMAHDMNEEIDRQVPLMDEIDTKVDKAASDLKNTNVRLKDTVNQLRSSRNFCIDIVLLCIILGIAAYLYNQVQLNSIMECGKFMVALQVHESDPT 329
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 2615499 2619027 + Maker00033540 Lcy5g0279 632094
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy5g0279 329 Gene3D - 213 274 - -
Lcy5g0279 329 PANTHER SYNTAXIN 87 293 IPR045242 GO:0000149(PANTHER)|GO:0005484(PANTHER)|GO:0006886(PANTHER)|GO:0006906(PANTHER)|GO:0012505(PANTHER)|GO:0016021(PANTHER)|GO:0031201(PANTHER)|GO:0048278(PANTHER)
Lcy5g0279 329 SMART tSNARE_6 208 275 IPR000727 -
Lcy5g0279 329 FunFam Putative syntaxin-71-like 213 274 - -
Lcy5g0279 329 CDD SNARE_Qc 218 273 - -
Lcy5g0279 329 Coils Coil 262 282 - -
Lcy5g0279 329 Coils Coil 83 103 - -
Lcy5g0279 329 Pfam SNARE domain 250 299 IPR000727 -
Lcy5g0279 329 SUPERFAMILY SNARE fusion complex 206 273 - -
Lcy5g0279 329 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 213 275 IPR000727 -
Lcy5g0279 329 MobiDBLite consensus disorder prediction 20 43 - -
Lcy5g0279 329 ProSitePatterns Syntaxin / epimorphin family signature. 219 258 IPR006012 GO:0005484(InterPro)|GO:0006886(InterPro)|GO:0016020(InterPro)
Lcy5g0279 329 MobiDBLite consensus disorder prediction 15 43 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy5g0279 Lcy-Chr5:2615499 Lcy8g1893 Lcy-Chr8:45213700 3.24E-108 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy5g0279 K08506 - csv:101215905 499.204