Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy5g0280 ATGTCAAGTAATCCCTTTTCTCTTCTCTCTTCCACTCCCACTGCCTTTGCTCCACAGCAGCAGCAAGATGCTAACCCTAACCCTAACCCTAAACCGAAACCCTCCGCTGCGGCAAAGAAGAAGAGAAACCTCCCCGGAACCCCAGATCCAGAGGCAGAGGTTATTGCTTTGTCGCCGAAATCGCTCATGGCGACGAATAGATTCATATGCGAAATTTGCAACAAGGGGTTTCAGAGAGATCAGAACCTGCAACTTCACCGACGAGGACATAACCTACCGTGGAAGCTACGACAGCGGACGAACAAGGAGGCAATCAAGAAGAAGGTGTATATTTGCCCGGAGAAGACGTGCGTCCACCACGATCCGTCGCGAGCTCTCGGTGACCTCACCGGAATAAAGAAACATTTCAGCCGGAAACACGGCGAGAAGAAGTGGAAATGTGAGAAGTGTTCTAAGAAATATGCTGTTCAATCTGATTGGAAAGCTCACTCCAAAACTTGTGGGACAAGAGAATATAAGTGTGATTGTGGAACCCTTTTTTCCAGGAAAGACAGCTTCATAACCCACAGAGCATTTTGCGATGCCTTAGCTGAAGAAAGTGCAAGAATCACAACAGTTTCAGCCACAAACATTCTCAATAATCTCAGAAATGATTCAATTCTTCTTCATCATCAACAAGATCCACAGCAATCTTTGATCGATCATCAGCAAAATAATCTTCAATCTCTTGGTGATGTTTCTGGGCTTTCCCAATTCAGTCATTCAGATCATTTTTTGAGAGATTTTGAAGATCAGCAGCAGAAGAACAGATCTCCATTGTCACTTTGGCTGAACCAAGCTTCTGCTGCAACTGCAATGAACAATAACAACAACAACAATATTTCCAACTTTTTTGGAGCTTCTTCTTCCTCGTCCAATCTTTTCGGATCGATAAACGAAACCGGGATCTCGATGTTGCCGGTGATGGAGAAGGACGAGGTTGAGAATAAGGGAAGCTTGTCGAAAGCTACCGCACTGTTGTCGGGTCAATCTTCTCAGTCTGTTGTTTCGTCTTCTCCGATGTCGGCGACTGCCCTTCTGCAAAAAGCTGCTCTTATGGGCTCAACTAGAAGCAGCAACAACAATAATTCTCCGCTCTTCGGAGCGGGCGCTTTCGGAGTAATGAGCTCTTCGTCTTCGTCGTCGTCTTCACCTTCGAATAATGCAGTGAGTTTGAACTCTCTGAATAAATCTGGAAGCCTGACAATGACGGACTCGGTGCAGATGGTCGGTAGCAGCTCTGACTTGAGCTCGAATTGTCTCAGCCAGCTTCTGCTGCCACCAAACGTTAACAACGGTATGAGAAGTAGCGGTCAAACGAGGGACTTCCTCGGTGTCGGGGGAGGAGGAGAAGCGCCTCGGCCTCCGTTCCTCCCACCGGAGCTAGCGAAATTCGCCACCATAAACTCAACAATGGGACTAAGCCAATTTGCAGCCAACCACTAA 1485 47.14 MSSNPFSLLSSTPTAFAPQQQQDANPNPNPKPKPSAAAKKKRNLPGTPDPEAEVIALSPKSLMATNRFICEICNKGFQRDQNLQLHRRGHNLPWKLRQRTNKEAIKKKVYICPEKTCVHHDPSRALGDLTGIKKHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKTCGTREYKCDCGTLFSRKDSFITHRAFCDALAEESARITTVSATNILNNLRNDSILLHHQQDPQQSLIDHQQNNLQSLGDVSGLSQFSHSDHFLRDFEDQQQKNRSPLSLWLNQASAATAMNNNNNNNISNFFGASSSSSNLFGSINETGISMLPVMEKDEVENKGSLSKATALLSGQSSQSVVSSSPMSATALLQKAALMGSTRSSNNNNSPLFGAGAFGVMSSSSSSSSSPSNNAVSLNSLNKSGSLTMTDSVQMVGSSSDLSSNCLSQLLLPPNVNNGMRSSGQTRDFLGVGGGGEAPRPPFLPPELAKFATINSTMGLSQFAANH 494
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 2632744 2635507 + Maker00033377 Lcy5g0280 632095
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy5g0280 494 Gene3D Classic Zinc Finger 120 202 - -
Lcy5g0280 494 FunFam protein indeterminate-domain 12-like 47 116 - -
Lcy5g0280 494 ProSitePatterns Zinc finger C2H2 type domain signature. 70 90 IPR013087 -
Lcy5g0280 494 Pfam BIRD-IDD transcription factor, fourth C2HC zinc finger 171 210 - -
Lcy5g0280 494 Pfam BIRD-IDD transcription factor, second C2H2 zinc finger 106 140 - -
Lcy5g0280 494 ProSiteProfiles Zinc finger C2H2 type domain profile. 68 90 IPR013087 -
Lcy5g0280 494 MobiDBLite consensus disorder prediction 1 51 - -
Lcy5g0280 494 MobiDBLite consensus disorder prediction 1 24 - -
Lcy5g0280 494 SMART c2h2final6 110 140 IPR013087 -
Lcy5g0280 494 SMART c2h2final6 145 165 IPR013087 -
Lcy5g0280 494 SMART c2h2final6 68 90 IPR013087 -
Lcy5g0280 494 SUPERFAMILY beta-beta-alpha zinc fingers 67 165 IPR036236 -
Lcy5g0280 494 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 22 463 IPR031140 GO:0003700(PANTHER)|GO:0005634(PANTHER)
Lcy5g0280 494 Pfam BIRD-IDD transcription factor, third C2HC zinc finger 144 168 - -
Lcy5g0280 494 FunFam protein indeterminate-domain 5, chloroplastic-like 123 202 - -
Lcy5g0280 494 Pfam Zinc finger, C2H2 type 68 90 IPR013087 -
Lcy5g0280 494 Gene3D Classic Zinc Finger 46 119 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy3g2220 Lcy-Chr3:49025676 Lcy5g0280 Lcy-Chr5:2632744 6.70E-104 dispersed
Lcy4g0506 Lcy-Chr4:6142363 Lcy5g0280 Lcy-Chr5:2632744 4.59E-93 dispersed
Lcy5g0280 Lcy-Chr5:2632744 Lcy8g1391 Lcy-Chr8:40605432 6.81E-103 dispersed
Lcy11g0296 Lcy-Chr11:4669277 Lcy5g0280 Lcy-Chr5:2632744 9.51E-97 transposed
Lcy1g1384 Lcy-Chr1:13398972 Lcy5g0280 Lcy-Chr5:2632744 1.90E-108 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
20054 None None None None Lcy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy5g0280 K25870 - csv:101213422 722.62