Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy5g0283 ATGGGTAACATTGGGAGTAGCGGTTCCAATGGCCGGAGAAGACACGGAACCCGCCGGAGCCATCCGACTCCGCCACCACCGGCTCCACCGCAGCCCGAACTAACGAGTAACCGATACGTTTTTGCCGCTGCTACGCCCTACCCATCGCAATACCCTAGCCATCCGAATCACCCGCCGCCGTACTACCAGTATCCCGGTTACTTTCCGCCGCCGCCTGGCCCGCCGCCGTCGATGCCGATGCCCTTGCCGGCGCCTTACGACCACCACCACCGCGCAGGCCATCCCCAGATGGATCCTGCGCATTGGGTCGGTGGGAGGTACCCTTATGGCCCTCCCATGCCGCCCCAAACGCCCTATGTTGAGCATCAGAAGGCGGTTACGATTCGGAATGATGTTAATCTCAAGAAGGAAACTCTTAAGGTTGAGCCTGATGAACAAAACCCCGGCCAATTCCTCGTATCTTTCACGTTCGATGCCACCGTCGCTGGGAGTATCACCATCTTCTTCTTTGCGAAAGAAGGCGAAGATTGTAACTTGACACCCGTAAAAGAAGACACTTTTCAACCAGTGACCGTCCATTTCGAACAGGGCCTCGGGCAGAAGTTCAGACAACCTTCTGGAACGGGAATAGATTTCTCAAAGTTTGAAGAGTCAGAATTACTGAAAGTAAATGACACCGATGTCTATCCATTAGCTGTAAAAGCTGAGGCTTCCACTGACTGTCAAACTGGCCCAGACGGAACCGTAGTACCCGAGACCATGAATTCTCAGATAACCCAGGCAGTGTTTGAGAAAGATAAAGGTGAATATCAGGTAAGGGTGTTGAAACAAATCCTGTGGGTCAATGGTATGAGATATGAGCTGCAGGAGATCTATGGAATCGGTAATTCAGTCGAGGGCGATGTAGATGGAAATGACCCTGGAAAGGAATGTGTCATTTGCTTGTCAGAACCACGAGATACGACCGTCCTTCCCTGCCGACACATGTGTATGTGTAGTGGATGTGCTAAGGTGTTGAGGTTCCAGACGAATCGATGCCCGATTTGCAGACAACCGGTCGATAGGCTCTTAGAGATAAGGGTCAGCAATGGACCGGAACCAGAAGAATAA 1110 52.07 MGNIGSSGSNGRRRHGTRRSHPTPPPPAPPQPELTSNRYVFAAATPYPSQYPSHPNHPPPYYQYPGYFPPPPGPPPSMPMPLPAPYDHHHRAGHPQMDPAHWVGGRYPYGPPMPPQTPYVEHQKAVTIRNDVNLKKETLKVEPDEQNPGQFLVSFTFDATVAGSITIFFFAKEGEDCNLTPVKEDTFQPVTVHFEQGLGQKFRQPSGTGIDFSKFEESELLKVNDTDVYPLAVKAEASTDCQTGPDGTVVPETMNSQITQAVFEKDKGEYQVRVLKQILWVNGMRYELQEIYGIGNSVEGDVDGNDPGKECVICLSEPRDTTVLPCRHMCMCSGCAKVLRFQTNRCPICRQPVDRLLEIRVSNGPEPEE 369
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 2652287 2656207 - Maker00033465 Lcy5g0283 632098
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy5g0283 369 ProSiteProfiles Zinc finger RING-type profile. 311 350 IPR001841 -
Lcy5g0283 369 MobiDBLite consensus disorder prediction 1 58 - -
Lcy5g0283 369 CDD mRING-HC-C3HC5_MGRN1-like 309 350 IPR045195 -
Lcy5g0283 369 PANTHER MAHOGUNIN 1 363 IPR045194 GO:0016567(PANTHER)|GO:0061630(PANTHER)|GO:0061630(InterPro)
Lcy5g0283 369 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 296 360 IPR013083 -
Lcy5g0283 369 FunFam probable E3 ubiquitin-protein ligase LOG2 295 360 - -
Lcy5g0283 369 Pfam Zinc finger, C3HC4 type (RING finger) 309 355 - -
Lcy5g0283 369 SMART ring_2 311 349 IPR001841 -
Lcy5g0283 369 SUPERFAMILY RING/U-box 310 356 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy11g1506 Lcy-Chr11:38939221 Lcy5g0283 Lcy-Chr5:2652287 1.39E-74 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy5g0283 K27504 - csv:101216150 603.979