Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lcy5g0303 | ATGTCACAAGATTCTGAGGAGATAAAGACGATTGAGCAGTGGAAATGGTCCGAAATGCAAGGCCTTGAGCTCGTCTCTTCTGATCCTCCTCCTCCTTCTCCTTCTCTTGACTCGTTTATAATCAACAACCCATCAGCCTCAACGGCCAAACTCACAGACCCTGAGGACCTCAGGCTCAAGGAAGAGGCTCAAGGCGGAATTGGCAGAGCCACCAACGGAGAAATGGAGTCTACGAGTGATTCCAAGAAGGAAAACGGTGGTGGCACCAGCGGGGAGAAGCCTGAGGCTGTCACCGCCGTTGGGTTTGGGGAGCTTTTCAGATTCGCCGATGGGTTGGATTACGTGTTGATGGCAATTGGGTCGGTTGGAGCCCTCGTCCATGGTTGCTCTCTGCCTCTGTTTCTTCGATTCTTTGCCGATCTTGTTAACTCCTTTGGGTCTTACGCCAATGATGTGGATAAAATGATGCAGGAGGTTTTGAAGTATGCATTCTACTTTCTCGTGGTTGGAGCAGCGATATGGGCGTCATCCTGGGCAGAGATTTCGTGTTGGATGTGGACCGGCGAGCGGCAGTCCACGAAGATGAGGATCAAGTACCTAGAAGCAGCACTGGACCAGGACATTCAGTATTTTGATACAGAGGTGCGAACATCTGACGTCGTTTTCGCCATCAACACTGACGCAGTGATGGTCCAAGACGCCATTAGTGAGAAGCTGGGCAACTTCATCCACTATATGGCAACTTTTGTGTCTGGATTCGTTGTGGGTTTCACTGCTGTGTGGCAATTGGCGTTGGTAACTCTTGCGGTGGTTCCTCTGATTGCGGTAATCGGCGGCATCTACACCACTACAATAGCCAAGCTCACTGCCAAGACCCAGGAAGCTCTTTCAGAAGCTGGGAATATCGTCGAACAGACAATTGTTCAAATTCGAGTTGTATTTGCGTTCGTGGGCGAATCAAGAGCATTGCAGAGGTACTCCTCCGCATTGAAGATTTCTCAAAGGATAGGTTACAAGAGTGGATTCTCCAAGGGTATGGGATTGGGCGCCACTTACTTTGTTGTTTTCTGCTGTTACGCTCTTCTGCTCTGGTACGGAGGTTATCTTGTTAGGCATCACGCCACCAATGGCGGTCTCGCCATAGCCACCATGTTTGCAGTGATGATTGGCGGACTGGCATTGGGGCAATCTGCTCCGAGCATGAGTTCATTCGCAAAGGCCAAAGTTGCAGCTGGCAAAATCTACCGTATAATCGACCATAAGCCCACTCTAAACCGCAATAACGAATCTGGTTTGGAATTAGAGTCAGTTTCAGGACTGGTTGAGCTGAAGAATGTAGATTTCTCATACCCATCAAGGCCAGATGTAAGGATCCTCAACAATTTCAGCCTAACTGTCCCTGCCGGAAAAACAATAGCACTAGTTGGTAGCAGTGGCTCCGGCAAGAGCACCGTCGTCTCTCTAATTGAAAGATTCTATGACCCCAGTTCAGGTGAAGTTCTACTAGATGGGCGTGACATAAAAACTTTGAAGCTAAGATGGTTAAGGCAGCAGATAGGACTGGTGAGCCAAGAACCTGCTCTTTTTGCCACCACCATCAAGGAGAATATTCTCTTGGGCAGGCCTGATGCAGACCAAGTCGAGGTGGAGGAAGCTGCTCGAGTCGCCAATGCTCATTCATTCATCATCAAACTTCCTGAAGGCTATGACACCCAGGAAAAAGGTGCTACTGACATAGCATGCTGTGGAAGAAATAATGATGACATGAAGATGATGGGTTTTGAAGATATTGAAAGAGTAGGAGAAAGAGGACTGCAGCTTTCTGGGGGGCAGAAGCAGAGGATTGCAATAGCAAGGGCAATGCTGAAAAACCCTGCCATCCTACTCCTAGATGAGGCGACTAGTGCATTGGACTCTGAGTCGGAAAAGCTTGTACAGGAGGCTCTTGATCGTTTCATGATTGGGCGGACCACTCTTGTTATTGCCCATCGTCTTTCCACCATTCGCAAGGCTGACCTTGTGGCTGTACTCCAACAAGGAAGCGTTTCTGAAATTGGAACACATGACGAGCTCATTGCTAAAGGAGAGAATGGTGTATATGCCAAGCTCATCCGAATGCAGGAGATGGCACATGAAACTGCTCTCAATAATGCCAGAAAGAGTAGTGCAAGGCCTTCAAGTGCCAGGAACTCAGTGAGCTCCCCAATAATTGCACGGAATTCTTCCTATGGACGATCACCATATTCACGTCGGTTATCTGACTTCTCCACATCTGATTTTAGTCTTTCTCTGGATGCTTCACTTCCCAATTACAGGCTTGAAAAACTAGCCTTTAAGGAGCAGGCCAGTTCCTTTTGGCGTCTTGTGAAAATGAATTCACCCGAATGGCTCTATGCATTACTTGGTTCTGTTGGCTCTGTTGTTTGTGGGTTTTTAAGCGCCTTCTTTGCATACGTTCTAAGTGCTGTTCTCAGTGTCTATTACAACCCAGATCATGCTTTCATGAGCAGAGAAATAATAAAGTACTGCTACTTATTAATCGGACTTTCATCAGCTGCTCTTCTCTTCAATACCATACAGCATTTCTTCTGGGATATTGTGGGAGAGAACCTCACCAAACGTGTAAGAGAGAAGATGCTGACAGCAGTACTGAAAAATGAAATGGCATGGTTTGATCAGGAAGAAAATGAGAGTGCAAAGATTGCTGCAAGGCTGGCCCTTGACGCAAACAACGTCAGATCGGCCATTGGAGATAGGATTTCTGTGATTGTACAGAACACATCACTCATGCTAGTTGCATGCACTGCCGGGTTTGTTTTGCAGTGGCGCCTTTCTCTTGTCCTTGTTGCCGTCTTCCCTGTGGTTGTTGCGGCCACTGTTCTACAGAAAATGTTCATGACTGGTTTCTCAGGAGACCTTGAGGCCAACCATGCCAAGGCCACACAACTAGCAGGGGAGGCTATAGCCAATGTAAGGACAGTTGCTGCGTTCAACTCAGAGGAAAAGATTGTCAGACTTTTCTCAACCAACCTTGAGATCCCACTACGACGCTGCTTTTGGAAGGGACAGATTGCCGGTAGCGGATTTGGTGTTGCTCAGTTCTCTCTTTATGCTTCATATGCTCTAGGTCTTTGGTATGCCTCGTGGCTTGTGAAGCATGGGCTCTCTGATTTTTCAAAGGCAATCCGTGTTTTCATGGTCCTTATGGTTTCTGCAAATGGTGCAGCTGAAACACTCACTCTCGCTCCCGACTTTATTAAGGGTGGGCGAGCTATGCGTTCAGTCTTTGCCCTTCTTGACCGCAAAACTGAAATTGAACCTGATGATCCAGATGCCACCCCAGTCCCAGATAAACTTCGTGGAGAAGTTGAATTTAAACATGTTGACTTTTCCTACCCAACTCGTCCTGACATCCCTGTCTTTAGAGACCTTAGTTTGCGTGCACGAGCAGGAAAGACTCTTGCTCTCGTTGGTCCTAGTGGGTGTGGCAAGAGCTCTGTTATTGCATTAGTCCAAAGATTCTATGAGCCAACATCAGGACGAGTTATGATTGATGGAAAGGATATCCGTAAATTCAATCTCAAGTCCTTGAGAAAACACATTGCGATGGTCCCCCAGGAGCCATGCTTATTTGCTGCTTCCATACATGATAATATAGCTTATGGCCACGAATCAGCTACCGAGGCTGAGATCATTGAAGCTGCTACTTTGGCAAATGCTCACAAGTTCATATCTGCATTGCCAGAAGGGTATAAAACTAATGTTGGGGAGAGGGGAGTTCAACTATCGGGTGGACAGAAACAAAGAATTGCAATTGCCCGTGCTCTGATCAGGAAGGCAGAGCTTATGCTACTAGATGAGGCAACAAGTGCCCTCGATGCCGAGTCTGAGCGATCCGTCCAGGAGGCTCTCGACCGAGCTTGTTCAGGAAAAACAACAATCGTAGTTGCTCATCGACTATCAACTATCAGGAATGCTCATGTCATTGCAGTAATTGATGATGGTAAAGTAGCAGAGCAGGGATCACACTCACATTTGTTGAAAAATTATCCCGATGGGTGTTACGCCCGGATGATACAGTTACAAAGATTCACACACAGCCAAGTCATTGGTATGACTTCAGGTTCAACTTCCACAGCAAGAACTAGAGAGGATGAGGACAGAGAGAGCTAG | 4173 | 47.23 | MSQDSEEIKTIEQWKWSEMQGLELVSSDPPPPSPSLDSFIINNPSASTAKLTDPEDLRLKEEAQGGIGRATNGEMESTSDSKKENGGGTSGEKPEAVTAVGFGELFRFADGLDYVLMAIGSVGALVHGCSLPLFLRFFADLVNSFGSYANDVDKMMQEVLKYAFYFLVVGAAIWASSWAEISCWMWTGERQSTKMRIKYLEAALDQDIQYFDTEVRTSDVVFAINTDAVMVQDAISEKLGNFIHYMATFVSGFVVGFTAVWQLALVTLAVVPLIAVIGGIYTTTIAKLTAKTQEALSEAGNIVEQTIVQIRVVFAFVGESRALQRYSSALKISQRIGYKSGFSKGMGLGATYFVVFCCYALLLWYGGYLVRHHATNGGLAIATMFAVMIGGLALGQSAPSMSSFAKAKVAAGKIYRIIDHKPTLNRNNESGLELESVSGLVELKNVDFSYPSRPDVRILNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERFYDPSSGEVLLDGRDIKTLKLRWLRQQIGLVSQEPALFATTIKENILLGRPDADQVEVEEAARVANAHSFIIKLPEGYDTQEKGATDIACCGRNNDDMKMMGFEDIERVGERGLQLSGGQKQRIAIARAMLKNPAILLLDEATSALDSESEKLVQEALDRFMIGRTTLVIAHRLSTIRKADLVAVLQQGSVSEIGTHDELIAKGENGVYAKLIRMQEMAHETALNNARKSSARPSSARNSVSSPIIARNSSYGRSPYSRRLSDFSTSDFSLSLDASLPNYRLEKLAFKEQASSFWRLVKMNSPEWLYALLGSVGSVVCGFLSAFFAYVLSAVLSVYYNPDHAFMSREIIKYCYLLIGLSSAALLFNTIQHFFWDIVGENLTKRVREKMLTAVLKNEMAWFDQEENESAKIAARLALDANNVRSAIGDRISVIVQNTSLMLVACTAGFVLQWRLSLVLVAVFPVVVAATVLQKMFMTGFSGDLEANHAKATQLAGEAIANVRTVAAFNSEEKIVRLFSTNLEIPLRRCFWKGQIAGSGFGVAQFSLYASYALGLWYASWLVKHGLSDFSKAIRVFMVLMVSANGAAETLTLAPDFIKGGRAMRSVFALLDRKTEIEPDDPDATPVPDKLRGEVEFKHVDFSYPTRPDIPVFRDLSLRARAGKTLALVGPSGCGKSSVIALVQRFYEPTSGRVMIDGKDIRKFNLKSLRKHIAMVPQEPCLFAASIHDNIAYGHESATEAEIIEAATLANAHKFISALPEGYKTNVGERGVQLSGGQKQRIAIARALIRKAELMLLDEATSALDAESERSVQEALDRACSGKTTIVVAHRLSTIRNAHVIAVIDDGKVAEQGSHSHLLKNYPDGCYARMIQLQRFTHSQVIGMTSGSTSTARTREDEDRES | 1390 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 5 | 2856021 | 2863389 | - | Maker00033347 | Lcy5g0303 | 632118 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lcy5g0303 | 1390 | FunFam | ABC transporter B family member 1 | 104 | 439 | - | - | |
| Lcy5g0303 | 1390 | FunFam | ABC transporter B family member 1 | 779 | 1088 | - | - | |
| Lcy5g0303 | 1390 | CDD | ABC_MTABC3_MDL1_MDL2 | 441 | 707 | - | - | |
| Lcy5g0303 | 1390 | SUPERFAMILY | ABC transporter transmembrane region | 787 | 1109 | IPR036640 | GO:0005524(InterPro)|GO:0016020(InterPro) | |
| Lcy5g0303 | 1390 | CDD | ABC_6TM_Pgp_ABCB1_D1_like | 117 | 414 | - | - | |
| Lcy5g0303 | 1390 | Pfam | ABC transporter | 459 | 635 | IPR003439 | GO:0005524(InterPro)|GO:0016887(InterPro) | |
| Lcy5g0303 | 1390 | ProSiteProfiles | ABC transporter integral membrane type-1 fused domain profile. | 800 | 1087 | IPR011527 | GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)|GO:0140359(InterPro) | |
| Lcy5g0303 | 1390 | ProSitePatterns | ABC transporters family signature. | 607 | 621 | IPR017871 | GO:0005524(InterPro)|GO:0016887(InterPro) | |
| Lcy5g0303 | 1390 | SUPERFAMILY | ABC transporter transmembrane region | 105 | 419 | IPR036640 | GO:0005524(InterPro)|GO:0016020(InterPro) | |
| Lcy5g0303 | 1390 | CDD | ABC_MTABC3_MDL1_MDL2 | 1123 | 1362 | - | - | |
| Lcy5g0303 | 1390 | ProSiteProfiles | ATP-binding cassette, ABC transporter-type domain profile. | 441 | 704 | IPR003439 | GO:0005524(InterPro)|GO:0016887(InterPro) | |
| Lcy5g0303 | 1390 | Pfam | ABC transporter | 1142 | 1290 | IPR003439 | GO:0005524(InterPro)|GO:0016887(InterPro) | |
| Lcy5g0303 | 1390 | FunFam | ABC transporter B family member 1 | 1113 | 1363 | - | - | |
| Lcy5g0303 | 1390 | Gene3D | - | 431 | 572 | IPR027417 | - | |
| Lcy5g0303 | 1390 | Gene3D | - | 599 | 708 | IPR027417 | - | |
| Lcy5g0303 | 1390 | FunFam | ABC transporter B family member 1 | 431 | 708 | - | - | |
| Lcy5g0303 | 1390 | Gene3D | ABC transporter type 1, transmembrane domain | 1021 | 1120 | IPR036640 | GO:0005524(InterPro)|GO:0016020(InterPro) | |
| Lcy5g0303 | 1390 | Gene3D | ABC transporter type 1, transmembrane domain | 763 | 970 | IPR036640 | GO:0005524(InterPro)|GO:0016020(InterPro) | |
| Lcy5g0303 | 1390 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 432 | 707 | IPR027417 | - | |
| Lcy5g0303 | 1390 | SMART | AAA_5 | 1150 | 1342 | IPR003593 | GO:0016887(InterPro) | |
| Lcy5g0303 | 1390 | SMART | AAA_5 | 468 | 681 | IPR003593 | GO:0016887(InterPro) | |
| Lcy5g0303 | 1390 | CDD | ABC_6TM_Pgp_ABCB1_D2_like | 790 | 1105 | - | - | |
| Lcy5g0303 | 1390 | Gene3D | ABC transporter type 1, transmembrane domain | 709 | 720 | IPR036640 | GO:0005524(InterPro)|GO:0016020(InterPro) | |
| Lcy5g0303 | 1390 | Gene3D | ABC transporter type 1, transmembrane domain | 104 | 430 | IPR036640 | GO:0005524(InterPro)|GO:0016020(InterPro) | |
| Lcy5g0303 | 1390 | ProSiteProfiles | ABC transporter integral membrane type-1 fused domain profile. | 118 | 406 | IPR011527 | GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)|GO:0140359(InterPro) | |
| Lcy5g0303 | 1390 | PANTHER | ABC TRANSPORTER B FAMILY | 77 | 732 | IPR039421 | GO:0005887(PANTHER)|GO:0042626(PANTHER) | |
| Lcy5g0303 | 1390 | ProSitePatterns | ABC transporters family signature. | 1262 | 1276 | IPR017871 | GO:0005524(InterPro)|GO:0016887(InterPro) | |
| Lcy5g0303 | 1390 | Gene3D | - | 1121 | 1368 | IPR027417 | - | |
| Lcy5g0303 | 1390 | ProSiteProfiles | ATP-binding cassette, ABC transporter-type domain profile. | 1123 | 1359 | IPR003439 | GO:0005524(InterPro)|GO:0016887(InterPro) | |
| Lcy5g0303 | 1390 | MobiDBLite | consensus disorder prediction | 21 | 94 | - | - | |
| Lcy5g0303 | 1390 | FunFam | ABC transporter B family member 19 | 1089 | 1111 | - | - | |
| Lcy5g0303 | 1390 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 1114 | 1362 | IPR027417 | - | |
| Lcy5g0303 | 1390 | Pfam | ABC transporter transmembrane region | 119 | 390 | IPR011527 | GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)|GO:0140359(InterPro) | |
| Lcy5g0303 | 1390 | Pfam | ABC transporter transmembrane region | 802 | 1070 | IPR011527 | GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)|GO:0140359(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Lcy10g2000 | Lcy-Chr10:44105673 | Lcy5g0303 | Lcy-Chr5:2856021 | 0 | dispersed | |
| Lcy3g1654 | Lcy-Chr3:43770883 | Lcy5g0303 | Lcy-Chr5:2856021 | 7.78E-12 | dispersed | |
| Lcy3g2264 | Lcy-Chr3:49460549 | Lcy5g0303 | Lcy-Chr5:2856021 | 7.15e-317 | dispersed | |
| Lcy5g0303 | Lcy-Chr5:2856021 | Lcy9g2278 | Lcy-Chr9:47211832 | 0 | dispersed | |
| Lcy5g0303 | Lcy-Chr5:2856021 | Lcy1g0226 | Lcy-Chr1:2016431 | 0 | transposed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lcy5g0303 | K05658 | - | csv:101220974 | 2396.31 |