Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy5g0304 ATGGCGATCGCGATGGGCAAATCTTTCGATCCCCAATCGCAGATTTACACTTCCCCTCGTCCCCCAATCCACTTTCCCACCGACCCCTCCATCTCCCTTGCTTCATTCCTCTTCCGAAACTCCTCCTCTTTCCCTCACAGCCTCGCCCTCGCCGACGCCGATTCCGGCGAATCCCTCACCTTCCGTCAGCTTCAAATCCAAGTCTCCAAGTTAGCCCATGCCTTCCTCCAACTTGGGATTCGAAAAGGCGATGTGGTTCTCATATTCGCGCCTAATTCCATTCACTTCCCTGTTTGTTTCTTCGCCATTGTCGCCATTGGAGCCATCGCCACCACTTGTAATCCTGCTTACACCTTCGTCGAACTGTCCAAGCAAGTCCAAAACTGCAACCCCAAGCTCGTAATCACCGTTCCTGAACTCTGGGACGTAATCGGTAAACTCAACTTGCCTTCTGTAATTCTGGGTTCAGAAATTTCTCCAAAATTTTCCCGTCCCAACATCTGGGGTTACTCCGATTTGATTAGAAAAGCCGGCGATGTGTCCAATTTGCCGGTTCGTGAAGTGGGTCAGAGCGATGTAGCGGCTCTTTTGTATTCATCAGGGACGACTGGGATCAGCAAGGGAGTGATTCTAACTCACAAGAACTTCATAACGACGGCGTTGATGGTTTCTCAGGATCAGGACCGTAGTGGTGATCCTAGAAACGTGTTTTTGTGCTTCCTTCCAATGTTCCATGTCTTTGGTCTCTCTATAGTTCTTTACGCGCAGCTTCAAAGAGGAAACGCCGTCGTTTCAATGGCGAAGTTTGAGCTGGAAAAGGCTTTGAGGGTCGTGATGAAGTACAAGATCACTCATCTTTATCTTGTTCCGCCTGTAATTATAGCTCTGACGAAGCAAAGTGTAGTTAAGAATTACGATTTGTCTTCGTTGAAGGAGATTTTATCTGGGGCTGCGCCTCTTGGGAAGGAGGTGATGGAGGAATGCTCAAAGATTATACCTCAGGCTAAGATCAAGCAGGGATATGGTATGACAGAGACTTGTGGAGTTATTTCAGTGGAGTATGTGGAGGTAAGATCTAAGCTATCTGGGTCAACTGGATTCCTTATTTCAGGAGTTGAAGCTCAAATTTTGAGTACAGAAACACAGAAACGTCTTCCACCAGGTGAAACTGGGGAAATATGCGTCCGAGGACCAAATATGATGAAAGGGTATTTTAACAATCAGAAAGCCACCAACGACACCATTGATGATCAAGGATGGGTACATACTGGAGATATCGGATATTTCAATGAAGAAGGAGAGTTATTTGTTGTGGACAGAATCAAAGAACTCATCAAGTGTTATGGTTTTCAGGTTGCACCAGCGGAGCTTGAAGCACTGCTACTTTCTCACCCTCAAATATTAGATGCCATTGTGATTCCATATCCCGATGATAAAGCCGGTGAGGTCCCTATCGCATTTGTTGTTCGTTCGCCTAATAGTTCGATAAAGGAAGAAGATGTTCAAAAGTTTATTGCAGGGCAGGTTGCACCATTCAAGAGATTAAAAAAAGTAACCTTCACGAGCAGTGTTCCAAAGTCGGCGTCGGGAAAACTTCTGAGAAGGGAGCTCATAGCACAAGTCCGTGCCAAAATGTAG 1638 46.21 MAIAMGKSFDPQSQIYTSPRPPIHFPTDPSISLASFLFRNSSSFPHSLALADADSGESLTFRQLQIQVSKLAHAFLQLGIRKGDVVLIFAPNSIHFPVCFFAIVAIGAIATTCNPAYTFVELSKQVQNCNPKLVITVPELWDVIGKLNLPSVILGSEISPKFSRPNIWGYSDLIRKAGDVSNLPVREVGQSDVAALLYSSGTTGISKGVILTHKNFITTALMVSQDQDRSGDPRNVFLCFLPMFHVFGLSIVLYAQLQRGNAVVSMAKFELEKALRVVMKYKITHLYLVPPVIIALTKQSVVKNYDLSSLKEILSGAAPLGKEVMEECSKIIPQAKIKQGYGMTETCGVISVEYVEVRSKLSGSTGFLISGVEAQILSTETQKRLPPGETGEICVRGPNMMKGYFNNQKATNDTIDDQGWVHTGDIGYFNEEGELFVVDRIKELIKCYGFQVAPAELEALLLSHPQILDAIVIPYPDDKAGEVPIAFVVRSPNSSIKEEDVQKFIAGQVAPFKRLKKVTFTSSVPKSASGKLLRRELIAQVRAKM 545
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 2882684 2888426 - Maker00033549 Lcy5g0304 632119
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy5g0304 545 CDD 4CL 25 537 - -
Lcy5g0304 545 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 10 537 - GO:0016405(PANTHER)
Lcy5g0304 545 SUPERFAMILY Acetyl-CoA synthetase-like 17 543 - -
Lcy5g0304 545 Gene3D - 14 442 IPR042099 -
Lcy5g0304 545 Gene3D - 443 544 IPR045851 -
Lcy5g0304 545 FunFam 4-coumarate--CoA ligase 2 443 544 - -
Lcy5g0304 545 Pfam AMP-binding enzyme 39 405 IPR000873 -
Lcy5g0304 545 Pfam AMP-binding enzyme C-terminal domain 456 531 IPR025110 -
Lcy5g0304 545 ProSitePatterns Putative AMP-binding domain signature. 196 207 IPR020845 -
Lcy5g0304 545 FunFam Long-chain-fatty-acid--CoA ligase FadD 17 442 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy10g1052 Lcy-Chr10:32655234 Lcy5g0304 Lcy-Chr5:2882684 1.74E-31 dispersed
Lcy12g1570 Lcy-Chr12:35747580 Lcy5g0304 Lcy-Chr5:2882684 1.39E-24 dispersed
Lcy5g0304 Lcy-Chr5:2882684 Lcy5g0839 Lcy-Chr5:13457090 4.29E-130 dispersed
Lcy12g0025 Lcy-Chr12:532924 Lcy5g0304 Lcy-Chr5:2882684 1.02E-52 transposed
Lcy12g1663 Lcy-Chr12:37040879 Lcy5g0304 Lcy-Chr5:2882684 6.90E-63 transposed
Lcy12g1986 Lcy-Chr12:41239167 Lcy5g0304 Lcy-Chr5:2882684 2.33E-131 transposed
Lcy7g0614 Lcy-Chr7:5582729 Lcy5g0304 Lcy-Chr5:2882684 5.62E-129 transposed
Lcy11g0389 Lcy-Chr11:6730451 Lcy5g0304 Lcy-Chr5:2882684 9.13E-210 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy5g0304 K01904 - csv:101204417 946.421