Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy5g0317 ATGGCGGCCTCCTCCGGCAACCCCTTCTGGTACCAGTTTGTCTTCGGCCGCTGGTTCTCCGTCTTCGCTTCCATTCTCATCATGTCCGTCTCCGGCGCCACCTACATGTTCGGCCTCTACTCCTCCGACATCAAATCCTCCTTGGGCTACGACCAAACCACCCTCAATTTGCTCAGCTTCTTCAAGGATTTAGGCGGCAATTTCGGCGTCATCGGCGGCCTCATCAACGAGGTCGCCCCGCCGTGGGCGGTTCTTCTGATCGGCGCCGTCATGAACCTCTTCGGCTACATGATGATTTGGCTGGCCGTAACCAGCCGGATCCCGAAGCCCCAGATCTGGCATATGTGTCTCTACATTTGCATCGGAGCTAATTCTCAGACGTTTGCGAATACAGGGGCTCTCGTCACTTGCGTCAAGAACTTCCCGGAGAGCCGCGGCAGCGTTTTGGGCCTTTTGAAGGGCTTCGTCGGATTGAGCGGCGCCATTTTGACCCAGCTTTACCATGCGTTTTACGGCAACAACTCCAAATCTCTCATCCTCTTAATCGCTTGGCTTCCGGCCGCCGTCTCTGTAACTTTCCTCCGTTTCGTTCGCATCATTAAGGATCTCCGGCAGCCGAATGAGCTCAAAGTCTTCTTCCATATCCTTTATATTTCCCTCGGCCTTGCTGGGTCGTTAATGGTTTTGATTATTCTGCAAAATCGGCTGAAATTTCAACAAATGGAATACGCCGGAAGTGCCATTGTTGTGATTGTTCTGCTTTTACTCCCTCTAGCCATCGTTTTCAGAGAGGAATTGAGTGTTTGGAAGAGTAAAATCGAAAACCCAATTTCTCAATTGGAGTTGGCATCTCAACAACCACCGCCGCCACTGACCTCGGTGGCGCCGCCGAGCCCTCCGTCAGGCTCCTGCATTAAGAACACATTCAAACCCCCAAACAGAGGAGAGGACTACACAATTCCGCAAGCCGTTTTCAGCATCGATATGATTATTCTCTTCATCGCCACAATCTGCGGCGTCGGTGGAACATTGACGGCGATCGACAATTTGGGTCAAATCGGAGAATCTTTAGGGTACCCATCTCACAGCACCACCACGTTCATCTCTCTCGTCAGCATATGGAATTACCTCGGTCGTGTAGTCGCCGGATTCGCGTCGGAATTCCTCTGGAAAAAGTACAAACTCCCACGTCCTCTGTTTTTCTTCGTGACGGTTATTCTATCCTGCGTCGGCCATCTTCTAATCGCCTTCGGAGTTCCCAACTCGCTCTATTTTTCTTCGATCATCATCGGGTTCTGCTTCGGCGCGCAGTGGCCGTTGATCTTCGCAATCATATCGGAAATTTTCGGGCTGAAGTATTACGCGACTCTGTACAATTTGGGGGGAGTGGCGAGCCCGATTGGGGCGTATATTTTGAATGTGAGAGTGGCGGGTCGTTTGTACGACGAAGAGGCGTGGCGGCAGATGGAGGCGGCGGGACGGCGGAGAAAAGCAGGGGAGGATTTGAGTTGCTTGGGAGTGGAGTGTTACAGAAAGGCGTTTCTAATAATCACGGCGGCGACGATTTTTGGGGCGTTTGTTTTGTTGATTTTGGTGATTAGGACATGGAAGTTTTATAAGGGCGATATCTATAGGAAGTTCAGGGAGGAAGAAGGTGAAGAGGTGGAGGCGAAAATGGCGGCTCCGACGAACAGTGCGGTGGCGAAAACTGAAACTGTTTAG 1722 51.63 MAASSGNPFWYQFVFGRWFSVFASILIMSVSGATYMFGLYSSDIKSSLGYDQTTLNLLSFFKDLGGNFGVIGGLINEVAPPWAVLLIGAVMNLFGYMMIWLAVTSRIPKPQIWHMCLYICIGANSQTFANTGALVTCVKNFPESRGSVLGLLKGFVGLSGAILTQLYHAFYGNNSKSLILLIAWLPAAVSVTFLRFVRIIKDLRQPNELKVFFHILYISLGLAGSLMVLIILQNRLKFQQMEYAGSAIVVIVLLLLPLAIVFREELSVWKSKIENPISQLELASQQPPPPLTSVAPPSPPSGSCIKNTFKPPNRGEDYTIPQAVFSIDMIILFIATICGVGGTLTAIDNLGQIGESLGYPSHSTTTFISLVSIWNYLGRVVAGFASEFLWKKYKLPRPLFFFVTVILSCVGHLLIAFGVPNSLYFSSIIIGFCFGAQWPLIFAIISEIFGLKYYATLYNLGGVASPIGAYILNVRVAGRLYDEEAWRQMEAAGRRRKAGEDLSCLGVECYRKAFLIITAATIFGAFVLLILVIRTWKFYKGDIYRKFREEEGEEVEAKMAAPTNSAVAKTETV 573
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 3031968 3033689 + Maker00033184 Lcy5g0317 632132
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy5g0317 573 Gene3D MFS general substrate transporter like domains 326 538 IPR036259 -
Lcy5g0317 573 SUPERFAMILY MFS general substrate transporter 21 542 IPR036259 -
Lcy5g0317 573 PANTHER UNCHARACTERIZED NODULIN-LIKE PROTEIN 17 548 - GO:0016020(PANTHER)
Lcy5g0317 573 Pfam Nodulin-like 17 262 IPR010658 -
Lcy5g0317 573 CDD MFS_Mch1p_like 16 525 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy10g0514 Lcy-Chr10:13212641 Lcy5g0317 Lcy-Chr5:3031968 5.57E-186 dispersed
Lcy11g0331 Lcy-Chr11:5575541 Lcy5g0317 Lcy-Chr5:3031968 1.93E-187 dispersed
Lcy11g0333 Lcy-Chr11:5638652 Lcy5g0317 Lcy-Chr5:3031968 9.87E-186 dispersed
Lcy2g0604 Lcy-Chr2:5171988 Lcy5g0317 Lcy-Chr5:3031968 3.37E-110 dispersed
Lcy2g0605 Lcy-Chr2:5176176 Lcy5g0317 Lcy-Chr5:3031968 9.96E-103 dispersed
Lcy3g0912 Lcy-Chr3:32321316 Lcy5g0317 Lcy-Chr5:3031968 2.03E-40 dispersed
Lcy5g0317 Lcy-Chr5:3031968 Lcy7g0626 Lcy-Chr7:5718486 1.03E-248 dispersed
Lcy1g1322 Lcy-Chr1:12759877 Lcy5g0317 Lcy-Chr5:3031968 6.48E-261 wgd
Lcy10g1727 Lcy-Chr10:41647606 Lcy5g0317 Lcy-Chr5:3031968 3.35E-241 wgd
Lcy5g0317 Lcy-Chr5:3031968 Lcy7g0623 Lcy-Chr7:5689805 7.98E-233 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy5g0317 - - - 0.0