Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy5g0321 ATGAATGTGCATATAAGCCATACGGGGAGATTCGAATCAGTCATCCACAGAGATAACACTTCACTCTGTTTTTCTCAGCCAACCATGCCGTTCCAGAGGATAACCATCGCCGTCGGCCGCCCGGAGGAGGCCACCCACCCCGCCGCCCTCAAGGCCGCCTTGGCCGAGTTCATTTCCACTCTTATCTTCGTCTTCGCCGGCCAAGGCTCCGGTCTCGCCTTCGCCAAGCTTACTCATAACTCTCCCACCAGCCCTGCCGGTCTCCTCATAGCCTCCATAGCTCATGGCTTTGCCCTTTTCGTCGGCGTCTCCACCGGCGCCAACATCTCCGGCGGCCACCTCAACCCCGCCGTCACTTTCGGCGTCCTCGTTGGCGGTAACATCACCCTCCTCCGCGGCGTCCTCTACTGGATCGCTCAGCTCCTCGGCGCCGTCGTCGCTAACTTGCTGCTCAAATTCGTCATCACCGACGTGGCAATCTCAGGATTCTCGTTGTCAGCGGGAGTTGGAATTTGGGAAGCATTCGTTTTCGAGATCGTAATGACATTCGGATTAGTCTACACGGTGTACGCCACCGCCGTCGACCCGAAGAAGGGAGAATTGGGAGTGATTGCACCCATCGCCATCGGATTGATCGTGGCGGCGAACATTCTGGTGGGCGGCCCCTTCACCGGCGCCTCCATGAACCCCGCCGTGGCCTTCGGACCCGCCGTCGTGGCTTGGTCCTGGGCCGAGCACTGGATCTACTGGGCCGGCCCACTCATCGGCGGTGGCTTGGCCGGCGTCATCTACGAGCTCTTCTTCATTGGGTTCACCCACGAGCCCCTACCCGCCGTGGAATACTGA 846 59.93 MNVHISHTGRFESVIHRDNTSLCFSQPTMPFQRITIAVGRPEEATHPAALKAALAEFISTLIFVFAGQGSGLAFAKLTHNSPTSPAGLLIASIAHGFALFVGVSTGANISGGHLNPAVTFGVLVGGNITLLRGVLYWIAQLLGAVVANLLLKFVITDVAISGFSLSAGVGIWEAFVFEIVMTFGLVYTVYATAVDPKKGELGVIAPIAIGLIVAANILVGGPFTGASMNPAVAFGPAVVAWSWAEHWIYWAGPLIGGGLAGVIYELFFIGFTHEPLPAVEY 281
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 3082269 3083566 - Maker00033243 Lcy5g0321 632136
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy5g0321 281 Gene3D Glycerol uptake facilitator protein. 34 275 IPR023271 -
Lcy5g0321 281 PRINTS Major intrinsic protein family signature 132 151 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Lcy5g0321 281 PRINTS Major intrinsic protein family signature 177 195 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Lcy5g0321 281 PRINTS Major intrinsic protein family signature 210 232 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Lcy5g0321 281 PRINTS Major intrinsic protein family signature 95 119 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Lcy5g0321 281 PRINTS Major intrinsic protein family signature 247 267 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Lcy5g0321 281 PRINTS Major intrinsic protein family signature 51 70 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Lcy5g0321 281 Pfam Major intrinsic protein 44 264 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Lcy5g0321 281 ProSitePatterns MIP family signature. 113 121 IPR022357 -
Lcy5g0321 281 NCBIfam MIP family channel protein 55 264 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Lcy5g0321 281 FunFam Probable aquaporin TIP1-1 34 281 - -
Lcy5g0321 281 SUPERFAMILY Aquaporin-like 43 276 IPR023271 -
Lcy5g0321 281 CDD MIP 51 267 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Lcy5g0321 281 PANTHER AQUAPORIN-8 33 274 IPR034294 GO:0006833(PANTHER)|GO:0009705(PANTHER)|GO:0015250(PANTHER)|GO:0016020(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy10g1817 Lcy-Chr10:42496317 Lcy5g0321 Lcy-Chr5:3082269 5.45E-111 dispersed
Lcy3g2133 Lcy-Chr3:48287893 Lcy5g0321 Lcy-Chr5:3082269 1.49E-92 dispersed
Lcy5g0321 Lcy-Chr5:3082269 Lcy5g2326 Lcy-Chr5:46134097 1.87E-90 dispersed
Lcy1g1316 Lcy-Chr1:12646879 Lcy5g0321 Lcy-Chr5:3082269 9.66E-130 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy5g0321 K09873 - csv:101222386 454.136