Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy5g0325 ATGGATAGAGAGTGGGGTTCGAAGCCGGGAAGTGGAGGAGCGGCCTCTGCACAGAATGAAGCTATTGATCGGAGAGAGCGCCTTCGACGGCTTGCTCTTGAGACCATCGATCTCGCTAAGGATCCCTACTTCATGCGCAATCATCTTGGAAGTTATGAGTGTAAGCTTTGCTTGACTCTGCACAACAATGAGGGAAATTACTTGGCGCATACGCAGGGGAAGCGGCATCAGACTAATTTGGCAAAGAGAGCAGCCCGTGAAGCGAAGGAGGCTCCTGCTCAACCTCAACCCCACAAGAGGAAGGTCTCTGTTCGTAAAACAGTTAAGATTGGAAGACCTGGTTATCGGGTAACAAAGCAATTTGATTCTGAGACAAAGCAAAGATCTCTGCTTTTCCAGATTGAATATCCAGAAATTGAAGACCTAGCAAAGCCAAGACATCGGTTTATGTCCTCTTATGAGCAGCGGGTGCAACCTTTTGATAAAAGATACCAATATCTTCTGTTTGCAGCTGAACCGTATGAGATAATTGCATTCAAGGTTCCAAGCACAGAGATCGACAAATCTACACCAAAATTCTTCTCACATTGGGATCCAGACTCCAAAATGTTCACGTTGCAGTTGTATTTCAAATCCAAGCCACAAGAGGCAAACAAGCCACCAACTGTGCCTGCAGCCAATGGAACAGTGCCATCCGGTGCACCACCAAGGCCACTGCCACCACCACCACAAGCTCCACCACCGCCACCACCTCCGCCACAGCAAGGAGCACCACCGAGAGTTCCTCCTCCTCCGATGCCTGGATCCTTGCCACCACCCCCTTCTGTAATGGCAAATGGTCCTCCTAGGCCAATGCCCCCTGGTGGGGCTCCGCCCATCCCTCCACCACCTCCGGTTGGTAATAACACTATGGCGAATTTCACTCCTGGTAATCAGGTGAATAGACCTCCCATGCCACCCCCTCCACAGGGCTTCCCAGGCCAGGGTGTCCGTCAGCCGCCACCCCCACCGCCCAATATGGGATAG 1026 51.56 MDREWGSKPGSGGAASAQNEAIDRRERLRRLALETIDLAKDPYFMRNHLGSYECKLCLTLHNNEGNYLAHTQGKRHQTNLAKRAAREAKEAPAQPQPHKRKVSVRKTVKIGRPGYRVTKQFDSETKQRSLLFQIEYPEIEDLAKPRHRFMSSYEQRVQPFDKRYQYLLFAAEPYEIIAFKVPSTEIDKSTPKFFSHWDPDSKMFTLQLYFKSKPQEANKPPTVPAANGTVPSGAPPRPLPPPPQAPPPPPPPPQQGAPPRVPPPPMPGSLPPPPSVMANGPPRPMPPGGAPPIPPPPPVGNNTMANFTPGNQVNRPPMPPPPQGFPGQGVRQPPPPPPNMG 341
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 3121924 3124975 + Maker00033482 Lcy5g0325 632140
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy5g0325 341 MobiDBLite consensus disorder prediction 1 21 - -
Lcy5g0325 341 SMART ZnF_U1_5 49 83 IPR003604 GO:0003676(InterPro)|GO:0008270(InterPro)
Lcy5g0325 341 Gene3D Classic Zinc Finger 46 89 - -
Lcy5g0325 341 Pfam Pre-mRNA-splicing factor SF3a complex subunit 2 (Prp11) 110 204 IPR031781 -
Lcy5g0325 341 MobiDBLite consensus disorder prediction 215 341 - -
Lcy5g0325 341 Pfam Zinc-finger of C2H2 type 52 76 IPR013087 -
Lcy5g0325 341 Gene3D - 93 219 - -
Lcy5g0325 341 MobiDBLite consensus disorder prediction 231 302 - -
Lcy5g0325 341 PANTHER SPLICING FACTOR 3A SUBUNIT 2 1 338 IPR052092 GO:0000245(PANTHER)|GO:0005686(PANTHER)|GO:0071004(PANTHER)|GO:0071013(PANTHER)
Lcy5g0325 341 MobiDBLite consensus disorder prediction 313 341 - -
Lcy5g0325 341 FunFam Splicing factor 3a subunit 2 94 218 - -
Lcy5g0325 341 SMART CactinC_cactus_3 89 216 - -
Lcy5g0325 341 ProSiteProfiles Zinc finger matrin-type profile. 52 82 IPR000690 GO:0003676(InterPro)|GO:0005634(InterPro)|GO:0008270(InterPro)
Lcy5g0325 341 SUPERFAMILY beta-beta-alpha zinc fingers 48 83 IPR036236 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy5g0325 K12826 - csv:101202831 466.463