Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy5g0337 ATGAGGAACAAAACCAACTTCTTCTTTTGGCTCTACACTCTTGTCATTGTAGTTCTTTTCATCACCATTGCCTTCCGCTCCTCCCCGCTTTCCTCGACCGACAGCGTCGCCGCTGTCGGTCCTCAAGATGGTGCTTTTGAGCTTGGCATTTTCAGCAGTCTAGCCAAAGCAAGTGGTTTGGATGATCTCTTGTCTCTTGTGACTCAAATTGTGTCCAAACACCTTCATGGATGGAAGAATAGAAGAAGTTGTGATGAGAAGAAATGGAACTCTGAGTTGATATCTATTTACAATGTTTCACTTACTTTGACAGTTGATTTGAAAGGATGTGCAAATTTTAGTAGTGTGCAAAAGGCTGTGGATGCTGTTCCTGATTATGGCTCTTCAAGGACCCTTATCCTAATTGACTCTGGAATTTACAGGGAGAAGGTGGTGATAGAAGGAAACAAGACAAACTTGATAATTCAAGGTCAAGGTTATCTCAACACTGCAATAGAATGGAATGACACTGCCAATTCCACAGGAGGCACCACTTACAGCTCTTCAGTCACTATCTTTGCTTCAAACTTCACTGCTTTCAACATCAGCTTCAAAAACACAGCTCCTGAGCCAACTCCAGGGATTGTTGGAGGGCAAGCAGTGGCACTTCGAATTGCAGGAGATGAAGCTGCTTTCTATGGATGTGGATTTTATGGAGCTCAAGACACACTCTATGATGACAAGGGAAGACATTACTTCAAAGATTGTTTCATTCAAGGATCCATTGATTTCATCTTTGGCAATGCTCGATCGCTCTACGATGGTTGCAGAATCAAGTCAATAGCAAAGGAAGTATGGGGTGGTGGGGTGAGTGGAGCCATCACAGCTCAAGGAAGGCAAACAAGCAGCGAGGAAACTGGTTTTGCTTTCATCAACTGCACCATCCATGGCTCTGGCAAGGTGTGGCTCGGCCGCGCCTGGGGCGTCTCCGCCACCGTCGTCTTCTCCAACACGTACATGACTGACGTCGTCGCCGCCGACGGATGGAATGACTGGAGAGACCCTTCAAGAGATCAGAGTGTGTTCTTTGGGGAATATGAATGCTTTGGAAGTGGAGCAAATTACAGCTTGAGAGTGCCATATGCAAAGCACCTCAATCAAGTGGAAGCTCAGCCTTACTTGGATGTTTCTTATGTTGATGGAAATCAATGGCTCATCTATCAACAAACATCTTTGTCTGCCATTTGA 1227 45.31 MRNKTNFFFWLYTLVIVVLFITIAFRSSPLSSTDSVAAVGPQDGAFELGIFSSLAKASGLDDLLSLVTQIVSKHLHGWKNRRSCDEKKWNSELISIYNVSLTLTVDLKGCANFSSVQKAVDAVPDYGSSRTLILIDSGIYREKVVIEGNKTNLIIQGQGYLNTAIEWNDTANSTGGTTYSSSVTIFASNFTAFNISFKNTAPEPTPGIVGGQAVALRIAGDEAAFYGCGFYGAQDTLYDDKGRHYFKDCFIQGSIDFIFGNARSLYDGCRIKSIAKEVWGGGVSGAITAQGRQTSSEETGFAFINCTIHGSGKVWLGRAWGVSATVVFSNTYMTDVVAADGWNDWRDPSRDQSVFFGEYECFGSGANYSLRVPYAKHLNQVEAQPYLDVSYVDGNQWLIYQQTSLSAI 408
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 3382607 3385528 - Maker00033530 Lcy5g0337 632152
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy5g0337 408 Gene3D - 96 406 IPR012334 -
Lcy5g0337 408 Pfam Pectinesterase 104 394 IPR000070 GO:0030599(InterPro)|GO:0042545(InterPro)
Lcy5g0337 408 SUPERFAMILY Pectin lyase-like 98 400 IPR011050 -
Lcy5g0337 408 FunFam Pectinesterase 97 403 - -
Lcy5g0337 408 ProSitePatterns Pectinesterase signature 2. 251 260 IPR033131 -
Lcy5g0337 408 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 35 398 - GO:0030599(PANTHER)|GO:0045490(PANTHER)|GO:0052689(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy11g1335 Lcy-Chr11:37015131 Lcy5g0337 Lcy-Chr5:3382607 5.79E-69 dispersed
Lcy5g0337 Lcy-Chr5:3382607 Lcy6g0737 Lcy-Chr6:7166923 2.24E-129 dispersed
Lcy5g0337 Lcy-Chr5:3382607 Lcy4g1777 Lcy-Chr4:43837242 8.59E-67 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy5g0337 - - - 0.0