Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy5g0340 ATGGTCGTCGGAAACGAAAAAACGCCGATGGAGAATGAGACCGCCGTCACCGCCGCGGAGGGCGAGAGCCAGAACAGAGCGAGGCTAGCCATTCTAGAGCTCGCGAACATGATCAGCGTTCCGATGTCCCTCAACGCCGTCGTCCGCCTCAATATCGCCGACGCCATCTGGCAAGGAGGTTCCAACGAACCGCTCTCCGCCTCCGAGATCCTCGCACGCGTGATTCCAACCGGCGGCGACGCCGATAATCTCGAGCGCATCGTCCGTATGCTCACTAGCTACGGCGTTTTCGAAGAGCATCTCGGCCCTAACTCATCCGACCGCCGGTATTCCCTCACCGACGTCGGAAAGACTCTGGTTACTGATTCTGATGGCCTCTCCTACGCGCCCTACGTGCTTCAGCATCATCAGGACGCGCTTATGAGAGCGTGGCCTAGAGTGCACGAGGCTGCGATTGACGCTTCGACGGAGCCGTTCGTTAAAGCGAACGGCGAAGCGGCGTACAGTTACTACGGGAAGAAGGCGGAGATGAACTTGTTGATGCAGAGAGCGATGGCTGGCGTATCGGCGCCGTTCATGAAGGCTGTATTGGACGGCTACGATGGCTTCGGAGGAGTGGAGAAATTGGTGGACGTCGGCGGCAGCGCCGGCGATTGCTTGAGGATGATTTTACAGAAACATCCTCACATTAAGGAAGGGATCAACTTCGATCTGCCGGAGGTGGTGGCTAGGGCTCCCAGCATTCCCGGGGTGACTCACGTTGGAGGCGACATGTTCAAGTCCATCCCCACCGGTGACGCCATTTTCATGAAGTGGGTTCTATCGACATGGACGGACAATGAATGCAAGATTATATTGGAGAACTGCTGCAAATCTCTGCCGGCGGGAGGGAAACTGATCGCCTGCGAGCCAACGCTGCCGGAGAAGACGGACGACAGTCACCGGACACGTGCTCTTTTGGCCAACGACATATTCATCATGACCATTTACAGGGCCAAAAGCAAGCAGAGGACTGAGGAGCAGTTCCGGCAGCTCGGCCTCTCCGCCGGCTTCTCCGCCCTCCGCCCATTCCATATCGATTACTTCTACTGTTTGTTGGAATTTCAAAAGTGA 1113 56.69 MVVGNEKTPMENETAVTAAEGESQNRARLAILELANMISVPMSLNAVVRLNIADAIWQGGSNEPLSASEILARVIPTGGDADNLERIVRMLTSYGVFEEHLGPNSSDRRYSLTDVGKTLVTDSDGLSYAPYVLQHHQDALMRAWPRVHEAAIDASTEPFVKANGEAAYSYYGKKAEMNLLMQRAMAGVSAPFMKAVLDGYDGFGGVEKLVDVGGSAGDCLRMILQKHPHIKEGINFDLPEVVARAPSIPGVTHVGGDMFKSIPTGDAIFMKWVLSTWTDNECKIILENCCKSLPAGGKLIACEPTLPEKTDDSHRTRALLANDIFIMTIYRAKSKQRTEEQFRQLGLSAGFSALRPFHIDYFYCLLEFQK 370
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 3419444 3426997 - Maker00033088 Lcy5g0340 632155
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy5g0340 370 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 32 370 IPR016461 GO:0008168(InterPro)
Lcy5g0340 370 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 124 368 IPR029063 -
Lcy5g0340 370 MobiDBLite consensus disorder prediction 1 20 - -
Lcy5g0340 370 Gene3D - 13 124 IPR036388 -
Lcy5g0340 370 PANTHER O-METHYLTRANSFERASE 35 351 IPR016461 GO:0008168(InterPro)|GO:0008171(PANTHER)|GO:0008757(PANTHER)|GO:0019438(PANTHER)|GO:0032259(PANTHER)
Lcy5g0340 370 Gene3D Vaccinia Virus protein VP39 125 370 IPR029063 -
Lcy5g0340 370 SUPERFAMILY Winged helix DNA-binding domain 24 124 IPR036390 -
Lcy5g0340 370 PIRSF O-mtase 8 370 IPR016461 GO:0008168(InterPro)
Lcy5g0340 370 Pfam O-methyltransferase domain 150 352 IPR001077 GO:0008171(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy5g0340 Lcy-Chr5:3419444 Lcy6g1847 Lcy-Chr6:38476952 1.51E-65 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy5g0340 - - - 0.0