Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy5g0349 ATGGCGGTTTCTCAGACGACGGTTCATGCCTCGCCGGCTTCCCTCTACGTCGGCGACCTTCATCCTGATGTCACTGATGGCCAGCTCTTTGATGCTTTCTCTGGCTTCAAGAGCCTCGCCTCTGTTCGTATCTGTAGAGATTCCGCCACTGGACGGTCTCTCTCTTATGGCTACGTCAATTTCATTTCTCCTCAAGACGCAATCAAGGCCATGGAGGTAATGAATCACAGTATGCTGAATGGAAGAGCGATCCGAGTCATGTGGTCACGTCGTGATTCTGATTCAAGAAAAAGTGGAATTGGAAACGTGTTTGTTAAGAACTTGAGCGATTCAATCAATAGTTTAGGGCTTCAAGAGCTATTTAAGAAATTTGGAAATGTTCTGTCCAGCAAAGTTGCCACATCCGATGATGGGAAGAGCAAAGGATATGGCTTTGTTCAATTTGAATCTGAGGATTCTGCAAATGCTGCCATAGAGTCACTGAATGGTTTTACCATTGGGGATAAGCAGATATATGTCGGAAAGTTTGTCAGGAAAAGTGATCGAGTTTTGGCCAATCGTGATGTTAAATATACAAATTTGTATGTGAAAAATCTTGACCCAGATGTTGGGGAAGAGCTTTTGCAAGAAAAATTCTCTGAGTTCGGAAAAATTTCCAGCTTGGTTATTTCAAGGGATGAGAATGGGGTGTCAAGGGGTTTTGGCTTTATAAACTTTGAAAACTCTGATGATGCCAAACGGGCATTGGAAGCACTTAATGGATTAGAAATTGGTTCTAAGCTTATCTACATCGCGAGGGCACAAAAGAAGTCTGAACGTGAGCAATTATTACGTCGACATTATGAAGAGAAATGCAAGGAGCAAATGATGAAATGCAAGGGTTCAAACGTGTATGTGAAGAACATTGATGATGAAGTTACCGATGAAGAACTAAGAGAACGTTTTAATCAGTTTGGCACCATCACTTCATCAAAACTTATGCGAGATGACAAGGGAATAAACAAAGGGTTTGGATTTGTTTGCTTCTCTAATCCTGACGAAGCTAAAAGAGCCGTGAACACTTTGCAAGGATGTATGTTTCACGGGAAGCCGCTCTATTTGGCTATAGCACAAAGAAAAGAGGATAGACAAATGCAATTGAAGATTCAGTTTGCACAACGGTTGATACCAGGACCATCAACTACAATTTTTCCTGGTGGATACCCACCTTATTACTACACAGCACCAGGTGTTGTTCCACAAGTATCGTCTCGTCCAGGTCTGATGTTTCAGCCTTTAGGAATGAGGCCTGGGTGGAGAGCTAATACTTTTGCGTCTCCTGCAAGACCTGGCTTTCAACCTTCCCCTGTACCTATCATTCCGAATGCTTCTAGGCTACCTAGGCAAAACAGAGGCAAAATGAATGGACAAATACTTTCTCATCAAAATGGTGTCCAATCTGTCTCTTATATGCAAAATTCACAAGATGTCAATCAATCCGTAGTTACTGCAAAATCATCCGGCAATCAGCAGTGGAACGGACAGGTTAAGTATGTGCCGAATGCTCGACCGTGCGAAACAAACAAAACTTCTGGAGCCTCACCTGCTGCTTTTAATTCTGTTGGAGATGTCACTCAGGGATCACAAATACTGAGCAGCATGCTTGCTGCCTCTCCCCCAGACCAACAGAAACAGATCCTTGGAGAGCATCTCTACCCACTCGTCCAAAAACACAAGCTGGAGCTCGCTTCGAAAATTACCGGAATGCTTCTGGAGATGGACAACTCAGAATTGCTGCTTCTGTTAGAGTCACCTGAATCTCTGGCTGCCAAGGTTGAAGAAGCAGTGCAGGTGCTTAAGATCTCCAAGACTAAGCAGTCCAACCAAGACACACTCGGTTTCTTACCATCTGAGGTTGCAGTCAGCTGA 1908 43.71 MAVSQTTVHASPASLYVGDLHPDVTDGQLFDAFSGFKSLASVRICRDSATGRSLSYGYVNFISPQDAIKAMEVMNHSMLNGRAIRVMWSRRDSDSRKSGIGNVFVKNLSDSINSLGLQELFKKFGNVLSSKVATSDDGKSKGYGFVQFESEDSANAAIESLNGFTIGDKQIYVGKFVRKSDRVLANRDVKYTNLYVKNLDPDVGEELLQEKFSEFGKISSLVISRDENGVSRGFGFINFENSDDAKRALEALNGLEIGSKLIYIARAQKKSEREQLLRRHYEEKCKEQMMKCKGSNVYVKNIDDEVTDEELRERFNQFGTITSSKLMRDDKGINKGFGFVCFSNPDEAKRAVNTLQGCMFHGKPLYLAIAQRKEDRQMQLKIQFAQRLIPGPSTTIFPGGYPPYYYTAPGVVPQVSSRPGLMFQPLGMRPGWRANTFASPARPGFQPSPVPIIPNASRLPRQNRGKMNGQILSHQNGVQSVSYMQNSQDVNQSVVTAKSSGNQQWNGQVKYVPNARPCETNKTSGASPAAFNSVGDVTQGSQILSSMLAASPPDQQKQILGEHLYPLVQKHKLELASKITGMLLEMDNSELLLLLESPESLAAKVEEAVQVLKISKTKQSNQDTLGFLPSEVAVS 635
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 3516867 3521395 + Maker00033089 Lcy5g0349 632164
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy5g0349 635 Gene3D - 102 174 IPR012677 -
Lcy5g0349 635 Gene3D - 3 101 IPR012677 -
Lcy5g0349 635 ProSiteProfiles Poly(A)-binding protein C-terminal (PABC) domain profile. 540 617 IPR002004 GO:0003723(InterPro)
Lcy5g0349 635 FunFam Polyadenylate-binding protein 5 97 - -
Lcy5g0349 635 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 295 372 IPR000504 GO:0003723(InterPro)
Lcy5g0349 635 SMART rrm1_1 296 368 IPR000504 GO:0003723(InterPro)
Lcy5g0349 635 SMART rrm1_1 102 174 IPR000504 GO:0003723(InterPro)
Lcy5g0349 635 SMART rrm1_1 193 265 IPR000504 GO:0003723(InterPro)
Lcy5g0349 635 SMART rrm1_1 14 87 IPR000504 GO:0003723(InterPro)
Lcy5g0349 635 NCBIfam polyadenylate binding protein, human types 1, 2, 3, 4 family 13 613 IPR006515 GO:0003723(InterPro)
Lcy5g0349 635 CDD RRM3_I_PABPs 191 270 - -
Lcy5g0349 635 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 192 269 IPR000504 GO:0003723(InterPro)
Lcy5g0349 635 SMART rrm2_1 14 87 IPR003954 GO:0003676(InterPro)
Lcy5g0349 635 SMART rrm2_1 193 265 IPR003954 GO:0003676(InterPro)
Lcy5g0349 635 SMART rrm2_1 102 174 IPR003954 GO:0003676(InterPro)
Lcy5g0349 635 SMART rrm2_1 296 368 IPR003954 GO:0003676(InterPro)
Lcy5g0349 635 Pfam Poly-adenylate binding protein, unique domain 547 612 IPR002004 GO:0003723(InterPro)
Lcy5g0349 635 Pfam RNA recognition motif 297 365 IPR000504 GO:0003723(InterPro)
Lcy5g0349 635 Pfam RNA recognition motif 103 171 IPR000504 GO:0003723(InterPro)
Lcy5g0349 635 Pfam RNA recognition motif 194 262 IPR000504 GO:0003723(InterPro)
Lcy5g0349 635 Pfam RNA recognition motif 15 85 IPR000504 GO:0003723(InterPro)
Lcy5g0349 635 Gene3D - 280 382 IPR012677 -
Lcy5g0349 635 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 13 91 IPR000504 GO:0003723(InterPro)
Lcy5g0349 635 PANTHER RNA BINDING PROTEIN 9 188 - GO:0003723(PANTHER)|GO:0003730(PANTHER)|GO:0005634(PANTHER)|GO:0005829(PANTHER)|GO:0008143(PANTHER)|GO:0008266(PANTHER)|GO:1990904(PANTHER)
Lcy5g0349 635 SUPERFAMILY RNA-binding domain, RBD 293 384 IPR035979 GO:0003676(InterPro)
Lcy5g0349 635 FunFam Polyadenylate-binding protein 98 182 - -
Lcy5g0349 635 SUPERFAMILY RNA-binding domain, RBD 185 279 IPR035979 GO:0003676(InterPro)
Lcy5g0349 635 Gene3D - 177 279 IPR012677 -
Lcy5g0349 635 CDD RRM4_I_PABPs 294 372 - -
Lcy5g0349 635 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 101 178 IPR000504 GO:0003723(InterPro)
Lcy5g0349 635 SUPERFAMILY RNA-binding domain, RBD 13 180 IPR035979 GO:0003676(InterPro)
Lcy5g0349 635 FunFam Polyadenylate-binding protein 278 386 - -
Lcy5g0349 635 Coils Coil 264 284 - -
Lcy5g0349 635 SMART poly_2 552 615 IPR002004 GO:0003723(InterPro)
Lcy5g0349 635 FunFam Polyadenylate-binding protein 538 624 - -
Lcy5g0349 635 Gene3D - 538 626 - -
Lcy5g0349 635 FunFam Polyadenylate-binding protein 183 277 - -
Lcy5g0349 635 SUPERFAMILY PABC (PABP) domain 505 624 IPR036053 GO:0003723(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy2g1242 Lcy-Chr2:13105321 Lcy5g0349 Lcy-Chr5:3516867 2.23E-06 dispersed
Lcy5g0349 Lcy-Chr5:3516867 Lcy6g0511 Lcy-Chr6:4781282 4.73E-149 dispersed
Lcy5g0349 Lcy-Chr5:3516867 Lcy3g1131 Lcy-Chr3:36332809 5.93E-155 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy5g0349 K13126 - csv:101203793 1104.35