Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy5g0360 ATGATGATGATGACGATCATGGTGAAGGAGGAGGTGAAGATTTTCAGTTCCGCCATAGCTTTTCTTCTCTCCATTGCCCTTTTGGCTTACCCTTCTCTCTGTTTAGATGATACTTCTGCGCTGACTCGCTTCCGTCTTCAAGCTGATTCCCATGGCGGCCTTCTCAGAAACTGGACTGGTTCTGATGCTTGTGCTTCTTCATGGCGTGGAGTTCAGTGCTCTGTTAATGGCCGAGTTGTCGCTCTTTCTCTTCCTTCTATGAACTTACGAGGCCCCATTGAGTCTCTGGCGCCGCTCGATCAACTCCGCCTTCTCGACCTCCATGACAACCGCTTGAACGGTTCCATTTCGCCGGTTGTGAACTGTTCGAATCTCAAGTTGTTGTATCTCTCTGGCAATGACTTCTCCGGCGAGATTCCGCCGGAGATCTCGTCTCTCAGGCGACTTCTCCGGATGGACTTGTCCGATAACAACATCCGCGGCGGAATTCCTGAGGATCTCTCGAAATTGTCTCGGCTTCTCACGCTCCGTTTGCAGAACAATGTCCTCTCCGGTACGATTCCCGATCTCTCTGTTTCGCTTGTGAATCTCACTGAACTGAACTTAACCAACAATGAACTGTACGGCCGGTTGCCGGACGGGATGGTGAAGAAATTCGGCGAGAAGAGTTTCGCCGGTAACGAAGGGGTTTGTGGATCGAGTCCGTTACCGATCTGTTCGGTTACTAGTTCACCGCCGGCGTCGGATGCCGGCAGAACGGTACCTTCGAATCCAAGCTCATTGCCGCAAAACCCTATTATCAGTCCGAACGTTAAAGAATCGCGAAAAGGGCTCAGCCCTGGCGCGATCGCCGCGATTGTGATCGCAAATTGCGTTGCGTTGCTCGTGATTATCTCGTTCATCGTCGCGTATTACTGCGCTCGTGATCAGAGCTCGAACTCCATGGCCGGAAGCGAGAGCGGGAAGAGAAGGAAGAGCGGAAGTAGCTACGGAAGCGAGAAGAAGGTCTACGCCAATGGCGGTGGCGACAGCGATGGCACTAACGCTACAGATAGAAGCAAACTGGTGTTCTTCGACTGGAAGAAGCAATTCGAGCTTGAAGATTTGCTCAGAGCCTCGGCGGAGATGCTCGGAAAAGGAAGCTTGGGAACGGTTTACAGGGCGGTGCTCGACGACGGTTGTACGGTGGCGGTGAAGCGATTGAAGGATGCAAATCCATGTCCGAGGAAGGATTTTGAACAGTACATGGATGTGATTGGGAAGCTGAAGCATCCAAACATCGTCAGATTGAGAGCTTTTTACTACGCCAAAGAAGAAAAGCTTCTGGTTTATGATTATCTTCCTAATGGAAGCTTGCATTCTCTTCTCCATGGTAATCGAGGTCCAGGGAGGATTCCATTGGATTGGACAACAAGAATCAGCTTGGTTTTGGGAGCTGCTCGTGGATTAGCGAGGATCCATGGAGAATACAGTGCTTCAAAGATTCCTCATGGGAATGTGAAGTCTTCTAATGTTCTTCTTGACAAAAATGGAGTTGCTTGCATTTCTGATTTTGGGTTGTCTCTGCTTCTCAACCCTGTCCACGCCATTGCTAGGTTGGGAGGCTACAAGGCCCCGGAGCAAGACGAGACAAAACGGCTCTCTCAGAAGGCAGATGTTTATAGCTTTGGAGTCTTGTTGCTTGAAGTCTTGACCGGACGTGCACCGTCGCTCTACCCGTCGCCTTCGCACCCGCGAAACGACGAGGAAGAGCAGTCGGTGGACCTCCCGAAATGGGTTCGGTCCGTGGTGAAGGAAGAGTGGACGGCCGAGGTGTTTGATCCCGAACTGTTGAGGTACAAGAACATCGAGGAGGAGCTTGTGTCGATGCTTCACGTTGGGTTGGCTTGTGTTCTTCCTCAGCCGGAGAAGAGACCGACGATGGCGGAAGTGGCGAAGATGATCGAGGACATCAGGGTCGAGCAGTCTCCGCTCGGAGAAGATTACGACGAATCGCGTAATTCGCTTTCGCCTTCCCTTGCAACCACGGAAGATGGTATGGTGTAG 2046 51.56 MMMMTIMVKEEVKIFSSAIAFLLSIALLAYPSLCLDDTSALTRFRLQADSHGGLLRNWTGSDACASSWRGVQCSVNGRVVALSLPSMNLRGPIESLAPLDQLRLLDLHDNRLNGSISPVVNCSNLKLLYLSGNDFSGEIPPEISSLRRLLRMDLSDNNIRGGIPEDLSKLSRLLTLRLQNNVLSGTIPDLSVSLVNLTELNLTNNELYGRLPDGMVKKFGEKSFAGNEGVCGSSPLPICSVTSSPPASDAGRTVPSNPSSLPQNPIISPNVKESRKGLSPGAIAAIVIANCVALLVIISFIVAYYCARDQSSNSMAGSESGKRRKSGSSYGSEKKVYANGGGDSDGTNATDRSKLVFFDWKKQFELEDLLRASAEMLGKGSLGTVYRAVLDDGCTVAVKRLKDANPCPRKDFEQYMDVIGKLKHPNIVRLRAFYYAKEEKLLVYDYLPNGSLHSLLHGNRGPGRIPLDWTTRISLVLGAARGLARIHGEYSASKIPHGNVKSSNVLLDKNGVACISDFGLSLLLNPVHAIARLGGYKAPEQDETKRLSQKADVYSFGVLLLEVLTGRAPSLYPSPSHPRNDEEEQSVDLPKWVRSVVKEEWTAEVFDPELLRYKNIEEELVSMLHVGLACVLPQPEKRPTMAEVAKMIEDIRVEQSPLGEDYDESRNSLSPSLATTEDGMV 681
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 3623020 3625981 - Maker00033375 Lcy5g0360 632175
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy5g0360 681 PANTHER OS05G0588300 PROTEIN 23 657 IPR050994 -
Lcy5g0360 681 FunFam pollen receptor-like kinase 1 342 446 - -
Lcy5g0360 681 Pfam Protein kinase domain 375 646 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy5g0360 681 MobiDBLite consensus disorder prediction 312 345 - -
Lcy5g0360 681 MobiDBLite consensus disorder prediction 242 272 - -
Lcy5g0360 681 Gene3D Ribonuclease Inhibitor 34 116 IPR032675 -
Lcy5g0360 681 FunFam Nuclear pore complex protein NUP107 35 189 - -
Lcy5g0360 681 SUPERFAMILY L domain-like 35 215 - -
Lcy5g0360 681 CDD STKc_IRAK 377 651 - -
Lcy5g0360 681 Gene3D Transferase(Phosphotransferase) domain 1 447 669 - -
Lcy5g0360 681 MobiDBLite consensus disorder prediction 242 270 - -
Lcy5g0360 681 Gene3D Ribonuclease Inhibitor 117 240 IPR032675 -
Lcy5g0360 681 Pfam Leucine Rich Repeat 124 146 IPR001611 GO:0005515(InterPro)
Lcy5g0360 681 Pfam Leucine Rich Repeat 196 214 IPR001611 GO:0005515(InterPro)
Lcy5g0360 681 Pfam Leucine Rich Repeat 149 170 IPR001611 GO:0005515(InterPro)
Lcy5g0360 681 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 447 660 - -
Lcy5g0360 681 Gene3D Phosphorylase Kinase; domain 1 344 446 - -
Lcy5g0360 681 ProSiteProfiles Protein kinase domain profile. 371 653 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy5g0360 681 SUPERFAMILY Protein kinase-like (PK-like) 375 648 IPR011009 -
Lcy5g0360 681 MobiDBLite consensus disorder prediction 657 681 - -
Lcy5g0360 681 Pfam Leucine rich repeat N-terminal domain 36 74 IPR013210 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy5g0360 Lcy-Chr5:3623020 Lcy7g0488 Lcy-Chr7:4334786 3.39E-127 dispersed
Lcy8g0890 Lcy-Chr8:32132780 Lcy5g0360 Lcy-Chr5:3623020 2.36E-48 dispersed
Lcy5g0360 Lcy-Chr5:3623020 Lcy4g2143 Lcy-Chr4:47944602 1.33E-104 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
65917 None None None None Lcy PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy5g0360 - - - 0.0