Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy5g0371 ATGGAAATGCCCGGCAGGAGGTTGAACTATACGCTTCTCAGTCAGTTTCCAGACGACCAATACAGTGGCGGTGTTGCCGGAGCTTCGTCCTCGTTGAACGAATCGTCATCCGGAGAGGGGAAGAACGACAGGAGGAAGTTGGAAAGAGGATTGGATTGGGAAGCTGGTGCTGATCCCAGGGCGGCCCAGCAGCAGCAGGTTAATTGGATCGGCAATATGTACTCAGCGTTTGGTTTGCAGAGGCAGTCCAGTGGAAGCAGCTTTGGTGAGAGCTCGATATCCGGGGAGTACTATGCGCCGACACCGTCGACTACGGTGGCTAATGAGACGGATGCGTTTGGTTGTACGCACGATGATGTGCTTAGGATGGGAGGCGATTCGAGAGCTCAGGCAGCCGAGATGGCCGCCGGTACGGGGGGATCTTCTAGTAAGAGCTGGGCGCAACAGACGGAGGAGAGTTATCAACTGCAGTTGGCATTGGCGCTTCGGCTTTCCTCAGAGGCCACTTGTGCTGATGATCCTAATTTCTTAAATCCATTTCAGGACGATTCAGCTTTAAGGAGGTCGATAAGCTCTGCTGAGGCTGTGTCACATCGATTTTGGGTGAATGGCTGTCTATCATACTTCGACAAAGTTCCTGATGGGTTTTATTTAATCCATGGAATGGATCCATATGTGTGGACTGTGTGCACCAGCCTGCCTGATAATGATCGTATGCCATCAATTGAATCTCTAAAGTCTGTTGATCCTAGCACAGATTCTTCAATTGAAGTTGTTCTGATTGACCAGCGCACTGATCCCAACTTAAAAGACCTCCAAAGTCGGGTCCAAAACATTTCTTGCACCTCTCTAACCACAAAAGAGGTTGTAGACCAGCTTGCAAATCTTGTCTGTAGAATTTTGGGTGGCTCAGTTTCTGGAGAAGATGTGTTGGTGTCCATCTGGAGGGAGTGCAGTGATAACTTGAAGGAGACCTTAGGCTCAGTGGTTGTTCCTCTTGGTGGACTCTCTGTAGGACTCTGTCGGCATCGTGCTCTTCTTTTCAAAGTGTTAGCTGACACAATTGATTTACCCTGTCGAGTAGCCAAGGGCTGTAAATATTGCTCATGCCATGATTCTTCTTCTTGTCTTGTTCAGTTTGGGCTTGACAAGGAGTATCTGGTTGACTTGATTGGCAATCCTGGTTGCTTATATGAGCCTGATTCTTTACTCAATGGTCCATCCTCCATTTTAATCTCCTCGCCATTGCGATTTCCACGACTAAAGCCAGCAGAGCCTGCCATTGATTTTAGGTCACGGGCTAAACAGTACTTTTCAGATTGCCAGTTGCTTAATGTTGTTTTCGATGAAGGTTCCTCAGACATTGCTGCCAACTGCCATACTTTTGATCCTTGTATCAAGCTCACGGTTAACAACGGTAGATGCATAAAATTCTGGGAGGACTGTTGGTGTGATGACCAATCCCTCAAACTTCTATACCCAGACCTATTCCTAATATCTAACAAAAAAGGGGCGTCCGTTGCTGATTGCTGGGATTTGGAGTCCCTAAATTGGGACTTGGATTTTAGAAGGGGTCTTTTTGAAAGAGAGATCCCTAGTTGGATGGCTTTGCTGGACAAAATCAAGGAATTGAGGCTGACTAATGAGCAAGATCAATTAAGTTGGAAGCTGGAAAAGTCAGGCATCTACTCGGCCAAGTCCATGTTTCAGTCGTTATCTTTCCCATCCCCAAAGATTACTCAATCCACTAGTAGACTGATATGGAAGCATAAAAGCCCCAAGAAGGTGAAGGTGTTCCTTTGGTCTCTTGCCTATAGAAAAATTACTGTGGATGGAGAAGATGGCGCACTCCCCTTGTATCTAAAGCAGTTTGATAGGAAGTTCACAAACAGAAGCAACCAAATGCTTGTCACCGGTGATAATGATGAAAAGGCAATTTTACTGCGTGCAAAAACTTCTCAGCCTAACTCCCAAGACAGAGATTTCCAACAATTTAAACCGCGTGAGAATTCTCATATTATTATGCAACCAACTGTCCCGGTTGAGGATCCACTTAAGTACATTCCTATCCGTAGAAGTGTGCAGTCACTTTTGGATATGTCCCAGCCAAGGATGGATTCTACTATGGACGTAAGGTTTGCACAAGGAGGTCAGCTAATGCCAAGCTCTCGGAGTAGAACACTTCCCCTTGGTGCAGAGGATTTGGACATTCCATGGGGTGAGCTTGTTTTGAAAGAAAGAATCGGAGCAGGTTCCTTTGGAACTGTACATCGTGCTGATTGGAATGGATCGGAAGTTGCTGTGAAGATTCTCACCGAACAAGACTTCCATCCTGAACGTGTTAATGAGTTTCTGAGAGAGGTTGCTATCATGAAATCCTTGCGACATCCTAATATTGTACTGTTTATGGGTGCGGTGACCAAGCCACCAAACCTCTCCATTGTCACGGAATATCTATCGAGAGGTAGCTTGTATAGGCTTTTGCATAAGTCAGGTGTCAAAGACATAGATGAAACACGTCGGATAAACATGGCTTTTGATGTGGCAAAGGGAATGAACTATCTCCATAGACGTGACCCTCCAATTGTTCATCGTGATTTAAAATCACCAAATCTTTTAGTTGACAAGAAGTATACAGTAAAGGTTTGTGACTTTGGTCTCTCCCGTTTAAAGGCACGGACATTTCTTTCATCAAAATCCGCAGCTGGAACACCTGAGTGGATGGCACCAGAAGTACTACGTGACGAGCCCTCAAATGAAAAATCAGATGTTTACAGCTTTGGAGTGATTTTGTGGGAGTTGGCAACTTTGCAACAGCCATGGTGTAATCTAAACCCAGCTCAGGTTGTTGCAGCTGTTGGATTTAAGGGCAAAAGGCTTGACATCCCACGTGATGTAAATCCCAAATTGGCTTCCTTAATAGTGGCTTGCTGGGCCGAGTGA 2943 45.77 MEMPGRRLNYTLLSQFPDDQYSGGVAGASSSLNESSSGEGKNDRRKLERGLDWEAGADPRAAQQQQVNWIGNMYSAFGLQRQSSGSSFGESSISGEYYAPTPSTTVANETDAFGCTHDDVLRMGGDSRAQAAEMAAGTGGSSSKSWAQQTEESYQLQLALALRLSSEATCADDPNFLNPFQDDSALRRSISSAEAVSHRFWVNGCLSYFDKVPDGFYLIHGMDPYVWTVCTSLPDNDRMPSIESLKSVDPSTDSSIEVVLIDQRTDPNLKDLQSRVQNISCTSLTTKEVVDQLANLVCRILGGSVSGEDVLVSIWRECSDNLKETLGSVVVPLGGLSVGLCRHRALLFKVLADTIDLPCRVAKGCKYCSCHDSSSCLVQFGLDKEYLVDLIGNPGCLYEPDSLLNGPSSILISSPLRFPRLKPAEPAIDFRSRAKQYFSDCQLLNVVFDEGSSDIAANCHTFDPCIKLTVNNGRCIKFWEDCWCDDQSLKLLYPDLFLISNKKGASVADCWDLESLNWDLDFRRGLFEREIPSWMALLDKIKELRLTNEQDQLSWKLEKSGIYSAKSMFQSLSFPSPKITQSTSRLIWKHKSPKKVKVFLWSLAYRKITVDGEDGALPLYLKQFDRKFTNRSNQMLVTGDNDEKAILLRAKTSQPNSQDRDFQQFKPRENSHIIMQPTVPVEDPLKYIPIRRSVQSLLDMSQPRMDSTMDVRFAQGGQLMPSSRSRTLPLGAEDLDIPWGELVLKERIGAGSFGTVHRADWNGSEVAVKILTEQDFHPERVNEFLREVAIMKSLRHPNIVLFMGAVTKPPNLSIVTEYLSRGSLYRLLHKSGVKDIDETRRINMAFDVAKGMNYLHRRDPPIVHRDLKSPNLLVDKKYTVKVCDFGLSRLKARTFLSSKSAAGTPEWMAPEVLRDEPSNEKSDVYSFGVILWELATLQQPWCNLNPAQVVAAVGFKGKRLDIPRDVNPKLASLIVACWAE 980
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 3734716 3746914 + Maker00033118 Lcy5g0371 632186
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy5g0371 980 ProSitePatterns Serine/Threonine protein kinases active-site signature. 862 874 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Lcy5g0371 980 SMART serkin_6 742 980 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy5g0371 980 PRINTS Tyrosine kinase catalytic domain signature 922 944 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Lcy5g0371 980 PRINTS Tyrosine kinase catalytic domain signature 816 829 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Lcy5g0371 980 PRINTS Tyrosine kinase catalytic domain signature 856 874 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Lcy5g0371 980 PRINTS Tyrosine kinase catalytic domain signature 903 913 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Lcy5g0371 980 PRINTS Tyrosine kinase catalytic domain signature 966 980 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Lcy5g0371 980 Pfam Protein tyrosine and serine/threonine kinase 743 979 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Lcy5g0371 980 Pfam Ethylene-responsive protein kinase Le-CTR1 193 397 - -
Lcy5g0371 980 MobiDBLite consensus disorder prediction 17 37 - -
Lcy5g0371 980 CDD STKc_MAP3K-like 748 980 - -
Lcy5g0371 980 Gene3D Transferase(Phosphotransferase) domain 1 821 980 - -
Lcy5g0371 980 PANTHER SERINE-THREONINE PROTEIN KINASE 95 979 IPR050167 GO:0004672(PANTHER)|GO:0005737(PANTHER)|GO:0007165(PANTHER)
Lcy5g0371 980 MobiDBLite consensus disorder prediction 17 46 - -
Lcy5g0371 980 FunFam PAS domain-containing protein tyrosine kinase family protein 820 980 - -
Lcy5g0371 980 ProSitePatterns Protein kinases ATP-binding region signature. 748 769 IPR017441 GO:0005524(InterPro)
Lcy5g0371 980 Gene3D Phosphorylase Kinase; domain 1 735 820 - -
Lcy5g0371 980 ProSiteProfiles Protein kinase domain profile. 742 980 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy5g0371 980 FunFam Serine/threonine-protein kinase isoform 1 732 820 - -
Lcy5g0371 980 SUPERFAMILY Protein kinase-like (PK-like) 722 979 IPR011009 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy5g0371 Lcy-Chr5:3734716 Lcy9g1679 Lcy-Chr9:42015894 8.23E-163 dispersed
Lcy6g2333 Lcy-Chr6:48118881 Lcy5g0371 Lcy-Chr5:3734716 2.41E-32 dispersed
Lcy8g1568 Lcy-Chr8:42310050 Lcy5g0371 Lcy-Chr5:3734716 1.13E-66 transposed
Lcy1g1276 Lcy-Chr1:12109329 Lcy5g0371 Lcy-Chr5:3734716 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
65918 None None None None Lcy PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy5g0371 K14510 - csv:101208452 812.757