Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy5g0379 ATGAAAATGGATGATCAATATGCTCTCTCCGATCTCCGCCACCTCATGACTGCTCCTTCTCGTTCGCATTTCCCTTCTTCCTCAATTCCCCACCATGATCTCTTCTCTTCCTCCTCCTCCGCCTCGGCTTCTGCCTCGACAGCCTTTCGCCACCACCATAGTCCCTACGATCTCATTATGATGATGCCACGTGACCCTCTTCCCGATTTTCGCTCCGATTCTGCCGCCACGCCCCCTGCCGTCGTCGGCTCCGCTCCCCCCACAGGCTTCGAAGTCGAAACCGCCTCGCTCGCTGCTGACTCCGCCACCGCCCGATGGCCTCGCCAGGAAACCCTCACTCTCTTGGACATCAGATCTCGCCTTGATTCTAAGTTCAGAGAAGCTAACCAAAAAGGCCCCCTTTGGGATGAAGTTTCTAGAATCATGGCTGAGGAACACAATTATCAAAGAAGTGGGAAAAAATGCAGAGAAAAGTTTGAGAATTTATATAAATATTACAAAAAGACAAAGGAAGGCAAAGCTGGAAGACAAGATGGCAAGAACTACAGATTCTTCAGGCAGCTGGAAGCTCTCTATGGTGAAACCAGCAATGCCACTTCACTTCCAGATTCCCATTATGTTGGAGACAGCAACCTCAGATTCCAACAAAATGGGACCAACAATCCGATGAGCCACGAAGCTCAGCAGAAGCACTACTGCGACAGCCTCAGCCTCTCGAACACGTCGGAGTTCGAAACCTCGGCCTCGTCTGACGGTAACGACGACCTCGGCTCGGTCGGCGTAATGGACAATGATTCGATGGAGAAGAGGAGGAAGAAGCGAGGCGGGAAATGCTGGAAGGCTAAGATCAAGCAATTCATCGACTCGCAAATGAGGAAGCTAATTGATAAGCAAGAGGCTTGGTTGGAGAAGCTCATGAAAACTCTTGAACAAAAGGAAAAGGAGAGAATGGTTCGTGAGGAGGAATGGAGAAGACAAGAAGTGTCAAGAATTGACAGAGAGAGAAGCTTTTGGGCAAAGGAGAGAGCATGGATAGAAGCTAGAGATGCAGCATTAATGGAGGCATTGCAGAAGCTAACAGGACGAGAATTGAGAGAGTACAACTCCTCGCCCGACCACGGATTAACCGCGGTCGAGCATCATCGAAACAATAGCGAAAACCAAAACGAAGACGGGAGCGAGATACTAAACAACAGCACAGCTAGAGAACTAGTAGACAACAACAACTACCAAAGAAAAATAGTAATGGATCAAGGCAACAAGAAACGCAAGGAGAATTCAAGATCAGCCACCACCCCAACAACAACCTACAATCTTTACTTCCAAACAGACTCCTCCCTCTACAGCGGCGGCGGAGCCTACGGCGGTGGCACCGAGATTAAAGAACAAAGTCCAAACAGTTCGAACGCGGGTGGCGGTGGCGGTGGTGGCGGCGGCGGCCATGTGGTGCAAGATAGCTGCTTTCGTTTCTTGATGGGTGAAGGAGATCAGTCTCAATCTGGTTTATGGGAAAATTTTGGGCTGAAACTCAACAATGGAAGTGATCAAACTTGA 1554 49.49 MKMDDQYALSDLRHLMTAPSRSHFPSSSIPHHDLFSSSSSASASASTAFRHHHSPYDLIMMMPRDPLPDFRSDSAATPPAVVGSAPPTGFEVETASLAADSATARWPRQETLTLLDIRSRLDSKFREANQKGPLWDEVSRIMAEEHNYQRSGKKCREKFENLYKYYKKTKEGKAGRQDGKNYRFFRQLEALYGETSNATSLPDSHYVGDSNLRFQQNGTNNPMSHEAQQKHYCDSLSLSNTSEFETSASSDGNDDLGSVGVMDNDSMEKRRKKRGGKCWKAKIKQFIDSQMRKLIDKQEAWLEKLMKTLEQKEKERMVREEEWRRQEVSRIDRERSFWAKERAWIEARDAALMEALQKLTGRELREYNSSPDHGLTAVEHHRNNSENQNEDGSEILNNSTARELVDNNNYQRKIVMDQGNKKRKENSRSATTPTTTYNLYFQTDSSLYSGGGAYGGGTEIKEQSPNSSNAGGGGGGGGGGHVVQDSCFRFLMGEGDQSQSGLWENFGLKLNNGSDQT 517
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 3826790 3829976 - Maker00033256 Lcy5g0379 632194
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy5g0379 517 Pfam Myb/SANT-like DNA-binding domain 105 191 IPR044822 -
Lcy5g0379 517 MobiDBLite consensus disorder prediction 456 479 - -
Lcy5g0379 517 MobiDBLite consensus disorder prediction 401 415 - -
Lcy5g0379 517 MobiDBLite consensus disorder prediction 401 436 - -
Lcy5g0379 517 Gene3D - 106 168 - -
Lcy5g0379 517 PANTHER FI21293P1 84 388 - -
Lcy5g0379 517 FunFam trihelix transcription factor PTL-like 106 168 - -
Lcy5g0379 517 MobiDBLite consensus disorder prediction 243 274 - -
Lcy5g0379 517 CDD GT1 105 170 - -
Lcy5g0379 517 Coils Coil 295 322 - -
Lcy5g0379 517 ProSiteProfiles Myb-like domain profile. 98 163 IPR001005 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy5g0379 Lcy-Chr5:3826790 Lcy7g0591 Lcy-Chr7:5298454 3.51E-58 dispersed
Lcy5g0379 Lcy-Chr5:3826790 Lcy12g1454 Lcy-Chr12:33138834 1.32E-40 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
20065 None None None None Lcy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy5g0379 - - - 0.0