Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy5g0380 ATGGCTTCCTCCGGCCGCCACCCCGTCTACCGAGGCGTCCGCCGACGCAACACCGGCAAATGGGTCTCTGAGATTCGCGAGCCCAGAAAGCCCAACCGGATTTGGCTCGGGACCTTCCCGACCGCCGAAATGGCCGCCGTGGCCTACGACGTTGCCGCCCTCGCCCTCAAGGGCCATGACGCCGAGCTCAATTTCCCCAATTCCGCTGCTTCTCTCCCCGTCCCTGCATCGCGGTCCCCGTCTGATATCCAGGCGGCCGCCGCCTCTGCTGCAGCCGCGCTTGGAGCGGCTGCTGCGGCGATGGAGGCGCGAAATGGTGGTCCTCGTCGTGCCCGTGGTAGTTCGTCTGGAAGTAATTCGAGCCATGGCTATGGAGTGAGATATGATCAAGAGGAGGTGGGAGGTCAATTCATTGACGAGGATTTGATCTTTGATATGCCTAATGTTTTGATGAACATGGCGGAAGGAATGCTTCTTAGCCCTCCTCGTTTCAACAACCATGGCGGAGATGACGACGGAGACGACCACGGTGATCAAAACCTTTGGGATTTTTCCTAA 558 58.96 MASSGRHPVYRGVRRRNTGKWVSEIREPRKPNRIWLGTFPTAEMAAVAYDVAALALKGHDAELNFPNSAASLPVPASRSPSDIQAAAASAAAALGAAAAAMEARNGGPRRARGSSSGSNSSHGYGVRYDQEEVGGQFIDEDLIFDMPNVLMNMAEGMLLSPPRFNNHGGDDDGDDHGDQNLWDFS 185
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 3849488 3850045 + Maker00033588 Lcy5g0380 632195
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy5g0380 185 MobiDBLite consensus disorder prediction 167 185 - -
Lcy5g0380 185 CDD AP2 10 68 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy5g0380 185 Gene3D AP2/ERF domain 9 68 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy5g0380 185 SMART rav1_2 9 72 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy5g0380 185 SUPERFAMILY DNA-binding domain 9 68 IPR016177 GO:0003677(InterPro)
Lcy5g0380 185 PRINTS Ethylene responsive element binding protein signature 10 21 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy5g0380 185 PRINTS Ethylene responsive element binding protein signature 32 48 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy5g0380 185 ProSiteProfiles AP2/ERF domain profile. 9 66 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy5g0380 185 MobiDBLite consensus disorder prediction 111 125 - -
Lcy5g0380 185 MobiDBLite consensus disorder prediction 104 126 - -
Lcy5g0380 185 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D 5 183 IPR045277 GO:0003700(InterPro)
Lcy5g0380 185 Pfam AP2 domain 8 59 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy5g0380 185 FunFam Ethylene-responsive transcription factor 2 8 67 - -
Lcy5g0380 185 MobiDBLite consensus disorder prediction 162 185 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy5g0380 Lcy-Chr5:3849488 Lcy6g1927 Lcy-Chr6:40315238 4.07E-45 dispersed
Lcy5g0380 Lcy-Chr5:3849488 Lcy5g0381 Lcy-Chr5:3871566 1.23E-22 tandem
Lcy1g1274 Lcy-Chr1:12101022 Lcy5g0380 Lcy-Chr5:3849488 4.09E-48 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
20066 None None None None Lcy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy5g0380 - - - 0.0