Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lcy5g0380 | ATGGCTTCCTCCGGCCGCCACCCCGTCTACCGAGGCGTCCGCCGACGCAACACCGGCAAATGGGTCTCTGAGATTCGCGAGCCCAGAAAGCCCAACCGGATTTGGCTCGGGACCTTCCCGACCGCCGAAATGGCCGCCGTGGCCTACGACGTTGCCGCCCTCGCCCTCAAGGGCCATGACGCCGAGCTCAATTTCCCCAATTCCGCTGCTTCTCTCCCCGTCCCTGCATCGCGGTCCCCGTCTGATATCCAGGCGGCCGCCGCCTCTGCTGCAGCCGCGCTTGGAGCGGCTGCTGCGGCGATGGAGGCGCGAAATGGTGGTCCTCGTCGTGCCCGTGGTAGTTCGTCTGGAAGTAATTCGAGCCATGGCTATGGAGTGAGATATGATCAAGAGGAGGTGGGAGGTCAATTCATTGACGAGGATTTGATCTTTGATATGCCTAATGTTTTGATGAACATGGCGGAAGGAATGCTTCTTAGCCCTCCTCGTTTCAACAACCATGGCGGAGATGACGACGGAGACGACCACGGTGATCAAAACCTTTGGGATTTTTCCTAA | 558 | 58.96 | MASSGRHPVYRGVRRRNTGKWVSEIREPRKPNRIWLGTFPTAEMAAVAYDVAALALKGHDAELNFPNSAASLPVPASRSPSDIQAAAASAAAALGAAAAAMEARNGGPRRARGSSSGSNSSHGYGVRYDQEEVGGQFIDEDLIFDMPNVLMNMAEGMLLSPPRFNNHGGDDDGDDHGDQNLWDFS | 185 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
5 | 3849488 | 3850045 | + | Maker00033588 | Lcy5g0380 | 632195 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lcy5g0380 | 185 | MobiDBLite | consensus disorder prediction | 167 | 185 | - | - | |
Lcy5g0380 | 185 | CDD | AP2 | 10 | 68 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Lcy5g0380 | 185 | Gene3D | AP2/ERF domain | 9 | 68 | IPR036955 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Lcy5g0380 | 185 | SMART | rav1_2 | 9 | 72 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Lcy5g0380 | 185 | SUPERFAMILY | DNA-binding domain | 9 | 68 | IPR016177 | GO:0003677(InterPro) | |
Lcy5g0380 | 185 | PRINTS | Ethylene responsive element binding protein signature | 10 | 21 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Lcy5g0380 | 185 | PRINTS | Ethylene responsive element binding protein signature | 32 | 48 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Lcy5g0380 | 185 | ProSiteProfiles | AP2/ERF domain profile. | 9 | 66 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Lcy5g0380 | 185 | MobiDBLite | consensus disorder prediction | 111 | 125 | - | - | |
Lcy5g0380 | 185 | MobiDBLite | consensus disorder prediction | 104 | 126 | - | - | |
Lcy5g0380 | 185 | PANTHER | DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D | 5 | 183 | IPR045277 | GO:0003700(InterPro) | |
Lcy5g0380 | 185 | Pfam | AP2 domain | 8 | 59 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Lcy5g0380 | 185 | FunFam | Ethylene-responsive transcription factor 2 | 8 | 67 | - | - | |
Lcy5g0380 | 185 | MobiDBLite | consensus disorder prediction | 162 | 185 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lcy5g0380 | Lcy-Chr5:3849488 | Lcy6g1927 | Lcy-Chr6:40315238 | 4.07E-45 | dispersed | |
Lcy5g0380 | Lcy-Chr5:3849488 | Lcy5g0381 | Lcy-Chr5:3871566 | 1.23E-22 | tandem | |
Lcy1g1274 | Lcy-Chr1:12101022 | Lcy5g0380 | Lcy-Chr5:3849488 | 4.09E-48 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
20066 | None | None | None | None | Lcy | TF |
Pathway information
