Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lcy5g0396 | ATGGAAACTCCTTTTCTTCTCCACTCAATTTTGTTCCTTTTGTTTTTCCTTGTATTTCTCTTTCTAATTCTCTCCCACTTGAAGCCCAAGTTTCTCTGCAACTGCGAAATTTGCCAAGCTTATCTGACCTCATCTTGGTCGGAAAATTTTTGCAATCTCTGCGATTGGTATTCTCATCTTCTCCGACGGTCTCCGACAAAGACCATTCACATCCACGTTTTGAGGAACACGATCACGGCGAATCCCGACAACGTCGAGTACATTCTCAAGACCAAATTCGAAAATTACCCAAAGGGAAAATCGTTCTCCTCGATTCTTGGCGATTTTTTGGGCCGTGGCATTTTCAATGTCGACGGCGATCTGTGGCGGTTTCAGAAGAGAATGGCGATTCTCGAGCTTGGTCAACCGTCGATTCGATCGTACTGCTTCGAAATCGTTTGTCACGAGATTCATTCCCGGCTTTTGCCACTTCTTTCTTCGGTTGCGGCCACCAGTGACGGCGACGGCGGTGGCGGTGGCGGTGGCGGTGGCGGTGGCGGTGGTGGGGTTTTGGATTTGCAAGATGTGTTTAGGAGATTTGCTTTCGATAGTATTTGTAAGTTTTCGTTTGGATTGGATCCCATGTGCTTGGAGCTGTCCCTTCCAATGTCGGATTTTGCGGTCGCTTTCGACCTTGCTTCTAAGCTTTCTGCTCAAAGAGCCATGGCGGTCCCGCCGTTGATATGGAAGATCAAGCGAATGCTCAATTTAGGAAGCGAGAGGGAATTAAAACAAGCAATAAAGCTAATAAACATGTTAGCTCGAGAAGTGATTCGCAAGAGAAGAAAAATGGGATTTTCAACTCACAGAGACCTTCTCTCTCAGTTCATGCGAACCATCTCCGACGAAACTTACCTACGCGACATCGTCGTCAGCTTCCTTTTGGCCGGCCGCGACACCGTGGCTTCCGCCTTGACCAGCTTCTTCTGGGTTCTATCCGCCCACCCCGCCGTCGAGGCCGCCATCCAACTCGAAGCCGACCGAGTCATCGGGCCCGACTCTGACCCGACAAATTTCAACCAAATCCGAAACCTTCACTACTTACAAGCCGCCATTTTCGAGTCCATGAGGCTCTACCCGCCGATTCAATTCGACTCCAAGTTTTGCCAAAACGACGACGTTTTGCCCGACGGGACTTTCGTCCGACGTGGCACCCGGGTCACTTACCATCCGTACGCCATGGGTCGGGTCGAGGAGATTTGGGGTCCGGACTGTCTTGAGTTCGACCCGACCCGGTGGCTCAGAGACGGCGTTTTCTGCCCGGAGAATCCCTTCAAGTACCCGGTTTTTCAAGGTGGGTTTCGATTTTGTTTGGGGAAGGATATGGCGCTTGTTGAGTTGAAAACCGTCGCGCTTTCGCTTATTCGACGGTTTCGGTTTCGGTCGGTGATGCCATGTGTGGCGCCGCGGTTCTCTCCCGGCCTCACCGCCACCTTCTACGGCGGGTTTCGAGTTTTTGTTAGTGAGAAGAAGAAGAAACCGAGTTGA | 1527 | 50.88 | METPFLLHSILFLLFFLVFLFLILSHLKPKFLCNCEICQAYLTSSWSENFCNLCDWYSHLLRRSPTKTIHIHVLRNTITANPDNVEYILKTKFENYPKGKSFSSILGDFLGRGIFNVDGDLWRFQKRMAILELGQPSIRSYCFEIVCHEIHSRLLPLLSSVAATSDGDGGGGGGGGGGGGGGVLDLQDVFRRFAFDSICKFSFGLDPMCLELSLPMSDFAVAFDLASKLSAQRAMAVPPLIWKIKRMLNLGSERELKQAIKLINMLAREVIRKRRKMGFSTHRDLLSQFMRTISDETYLRDIVVSFLLAGRDTVASALTSFFWVLSAHPAVEAAIQLEADRVIGPDSDPTNFNQIRNLHYLQAAIFESMRLYPPIQFDSKFCQNDDVLPDGTFVRRGTRVTYHPYAMGRVEEIWGPDCLEFDPTRWLRDGVFCPENPFKYPVFQGGFRFCLGKDMALVELKTVALSLIRRFRFRSVMPCVAPRFSPGLTATFYGGFRVFVSEKKKKPS | 508 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 5 | 4164865 | 4168127 | - | Maker00033357 | Lcy5g0396 | 632211 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lcy5g0396 | 508 | CDD | CYP86A | 65 | 496 | - | - | |
| Lcy5g0396 | 508 | PRINTS | E-class P450 group I signature | 440 | 450 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy5g0396 | 508 | PRINTS | E-class P450 group I signature | 318 | 344 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy5g0396 | 508 | PRINTS | E-class P450 group I signature | 450 | 473 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy5g0396 | 508 | PRINTS | E-class P450 group I signature | 298 | 315 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy5g0396 | 508 | PANTHER | CYTOCHROME P450 | 24 | 476 | - | - | |
| Lcy5g0396 | 508 | Gene3D | Cytochrome P450 | 45 | 507 | IPR036396 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy5g0396 | 508 | PRINTS | P450 superfamily signature | 363 | 374 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy5g0396 | 508 | PRINTS | P450 superfamily signature | 450 | 461 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy5g0396 | 508 | PRINTS | P450 superfamily signature | 309 | 326 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy5g0396 | 508 | SUPERFAMILY | Cytochrome P450 | 52 | 501 | IPR036396 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy5g0396 | 508 | Pfam | Cytochrome P450 | 75 | 474 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Lcy5g0396 | Lcy-Chr5:4164865 | Lcy5g0812 | Lcy-Chr5:12554633 | 2.31E-126 | dispersed | |
| Lcy5g0396 | Lcy-Chr5:4164865 | Lcy5g1119 | Lcy-Chr5:23354334 | 9.21E-218 | transposed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lcy5g0396 | K20624 | - | csv:101207686 | 829.706 |