Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy5g0439 ATGTGGGCAAGCGCCGAAGGAGGGCCGCCGGAGGTTACTCTGGAGACTTCCATGGGTTCTTTCACCGTCGAGCTTTACTACAAACACGCACCGAGAACGTGTAGGAACTTTATTGAGCTTTCTCGGCGAGGTTATTACGACAATGTCAAATTTCACCGGATTATTAAGGATTTTGTAGTTCAAGGTGGAGATCCCACAGGAACTGGACGAGGTGGGGAATCTATTTATGGTAAGAAGTTTGAGGATGAAATAAAACCAGAGTTGAAGCATACTGGAGCTGGTATTCTATCAATGGCAAATGCTGGTCCTGATACAAATGGAAGCCAATTCTTTATCACTCTTGCTCCTTGCCCATCCTTGGATGGGAAGCATTCCATCTTTGGAAGAGTTTGTAGGGGAATGGAAATAATCAAAAGGCTTGGCAGTGTACAAACTGATAACAATGATAGGTATCTAGAAATCATTAGGAAGAAGTTTTACCCCTTAAAGGCATCCCAAGATAATCAAGGGGCCAGCTCTGCAGAGCACATCTGA 534 44.38 MWASAEGGPPEVTLETSMGSFTVELYYKHAPRTCRNFIELSRRGYYDNVKFHRIIKDFVVQGGDPTGTGRGGESIYGKKFEDEIKPELKHTGAGILSMANAGPDTNGSQFFITLAPCPSLDGKHSIFGRVCRGMEIIKRLGSVQTDNNDRYLEIIRKKFYPLKASQDNQGASSAEHI 177
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 4593031 4595718 - Maker00033579 Lcy5g0439 632254
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy5g0439 177 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 51 63 IPR002130 GO:0000413(InterPro)|GO:0003755(InterPro)
Lcy5g0439 177 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 25 40 IPR002130 GO:0000413(InterPro)|GO:0003755(InterPro)
Lcy5g0439 177 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 122 137 IPR002130 GO:0000413(InterPro)|GO:0003755(InterPro)
Lcy5g0439 177 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 109 121 IPR002130 GO:0000413(InterPro)|GO:0003755(InterPro)
Lcy5g0439 177 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 94 109 IPR002130 GO:0000413(InterPro)|GO:0003755(InterPro)
Lcy5g0439 177 Gene3D - 3 163 IPR029000 -
Lcy5g0439 177 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 15 150 IPR002130 GO:0000413(InterPro)|GO:0003755(InterPro)
Lcy5g0439 177 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE-RELATED 9 154 IPR044666 GO:0000413(PANTHER)|GO:0003755(PANTHER)|GO:0071013(PANTHER)
Lcy5g0439 177 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 12 153 IPR002130 GO:0000413(InterPro)|GO:0003755(InterPro)
Lcy5g0439 177 ProSitePatterns Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature. 46 63 IPR020892 GO:0003755(InterPro)|GO:0006457(InterPro)
Lcy5g0439 177 SUPERFAMILY Cyclophilin-like 12 154 IPR029000 -
Lcy5g0439 177 FunFam Peptidyl-prolyl cis-trans isomerase 2 161 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy1g0914 Lcy-Chr1:7966590 Lcy5g0439 Lcy-Chr5:4593031 1.92E-45 dispersed
Lcy5g0439 Lcy-Chr5:4593031 Lcy8g1742 Lcy-Chr8:43889279 3.31E-37 dispersed
Lcy5g0439 Lcy-Chr5:4593031 Lcy8g1054 Lcy-Chr8:36285817 1.52E-38 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy5g0439 K12733 - csv:101222111 307.76