Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy5g0439 ATGTGGGCAAGCGCCGAAGGAGGGCCGCCGGAGGTTACTCTGGAGACTTCCATGGGTTCTTTCACCGTCGAGCTTTACTACAAACACGCACCGAGAACGTGTAGGAACTTTATTGAGCTTTCTCGGCGAGGTTATTACGACAATGTCAAATTTCACCGGATTATTAAGGATTTTGTAGTTCAAGGTGGAGATCCCACAGGAACTGGACGAGGTGGGGAATCTATTTATGGTAAGAAGTTTGAGGATGAAATAAAACCAGAGTTGAAGCATACTGGAGCTGGTATTCTATCAATGGCAAATGCTGGTCCTGATACAAATGGAAGCCAATTCTTTATCACTCTTGCTCCTTGCCCATCCTTGGATGGGAAGCATTCCATCTTTGGAAGAGTTTGTAGGGGAATGGAAATAATCAAAAGGCTTGGCAGTGTACAAACTGATAACAATGATAGGTATCTAGAAATCATTAGGAAGAAGTTTTACCCCTTAAAGGCATCCCAAGATAATCAAGGGGCCAGCTCTGCAGAGCACATCTGA 534 44.38 MWASAEGGPPEVTLETSMGSFTVELYYKHAPRTCRNFIELSRRGYYDNVKFHRIIKDFVVQGGDPTGTGRGGESIYGKKFEDEIKPELKHTGAGILSMANAGPDTNGSQFFITLAPCPSLDGKHSIFGRVCRGMEIIKRLGSVQTDNNDRYLEIIRKKFYPLKASQDNQGASSAEHI 177
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 4593031 4595718 - Maker00033579 Lcy5g0439 632254

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lcy5g0439 177 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 51 63 IPR002130 GO:0000413(InterPro)|GO:0003755(InterPro)
Lcy5g0439 177 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 25 40 IPR002130 GO:0000413(InterPro)|GO:0003755(InterPro)
Lcy5g0439 177 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 122 137 IPR002130 GO:0000413(InterPro)|GO:0003755(InterPro)
Lcy5g0439 177 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 109 121 IPR002130 GO:0000413(InterPro)|GO:0003755(InterPro)
Lcy5g0439 177 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 94 109 IPR002130 GO:0000413(InterPro)|GO:0003755(InterPro)
Lcy5g0439 177 Gene3D - 3 163 IPR029000 -
Lcy5g0439 177 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 15 150 IPR002130 GO:0000413(InterPro)|GO:0003755(InterPro)
Lcy5g0439 177 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE-RELATED 9 154 IPR044666 GO:0000413(PANTHER)|GO:0003755(PANTHER)|GO:0071013(PANTHER)
Lcy5g0439 177 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 12 153 IPR002130 GO:0000413(InterPro)|GO:0003755(InterPro)
Lcy5g0439 177 ProSitePatterns Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature. 46 63 IPR020892 GO:0003755(InterPro)|GO:0006457(InterPro)
Lcy5g0439 177 SUPERFAMILY Cyclophilin-like 12 154 IPR029000 -
Lcy5g0439 177 FunFam Peptidyl-prolyl cis-trans isomerase 2 161 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy5g0439 K12733 - - csv:101222111 307.76
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy1g0914 Lcy-Chr1:7966590 Lcy5g0439 Lcy-Chr5:4593031 1.92E-45 dispersed
Lcy5g0439 Lcy-Chr5:4593031 Lcy8g1742 Lcy-Chr8:43889279 3.31E-37 dispersed
Lcy5g0439 Lcy-Chr5:4593031 Lcy8g1054 Lcy-Chr8:36285817 1.52E-38 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lcy10g0640 . 1 871 U-box Gene Family AT5G15400 77.2 0.0e+00 1347.0
Lcy10g0639 . 22 202 U-box Gene Family AT5G15400 71.3 6.9e-67 253.4
Lcy8g0814 . 282 924 U-box Gene Family AT2G23140 66.1 2.7e-122 436.8
Lcy13g1697 . 1 775 U-box Gene Family AT1G24330 59.4 8.3e-243 837.4
Lcy7g0059 . 32 540 U-box Gene Family AT1G24330 66.3 4.7e-185 645.6
Lcy13g1697 . 1 774 U-box Gene Family AT1G67530 59.8 2.1e-241 832.8
Lcy7g0059 . 32 540 U-box Gene Family AT1G67530 66.7 2.4e-181 633.3
Lcy1g0403 . 1 362 U-box Gene Family AT4G21350 63.4 2.1e-122 436.4
Lcy5g1148 . 1 339 U-box Gene Family AT4G21350 61.9 3.1e-110 396.0
Lcy12g2016 . 134 457 U-box Gene Family AT3G07360 56.8 4.8e-83 305.4
Lcy7g1209 . 290 485 U-box Gene Family AT1G71020 68.7 6.7e-73 272.3
Lcy10g1442 . 761 965 U-box Gene Family AT1G71020 52.7 2.6e-53 207.2
Lcy11g0195 . 258 427 U-box Gene Family AT1G71020 57.8 1.3e-47 188.3
Lcy7g0632 . 213 416 U-box Gene Family AT1G71020 52.2 1.7e-47 188.0
Lcy8g1815 . 256 426 U-box Gene Family AT1G71020 56.5 8.2e-47 185.7
Lcy7g1209 . 16 689 U-box Gene Family AT1G23030 54.6 2.0e-106 384.0
Lcy11g0195 . 93 632 U-box Gene Family AT2G28830 59.2 5.4e-101 365.9
Lcy8g1815 . 93 635 U-box Gene Family AT2G28830 50.8 5.0e-99 359.4
Lcy11g0195 . 1 634 U-box Gene Family AT3G46510 70.1 6.8e-169 591.7
Lcy8g1815 . 3 633 U-box Gene Family AT3G46510 67.8 3.3e-163 572.8
Lcy7g0632 . 9 623 U-box Gene Family AT3G46510 59.3 4.8e-122 436.0
Lcy7g0632 . 1 625 U-box Gene Family AT3G54850 69.0 1.0e-166 584.3
Lcy8g1815 . 13 629 U-box Gene Family AT3G54850 57.5 3.2e-115 413.3
Lcy11g0195 . 8 627 U-box Gene Family AT3G54850 55.6 8.1e-103 372.1
Lcy8g1307 . 98 650 U-box Gene Family AT5G42340 65.6 5.5e-126 449.1
Lcy7g0632 . 78 622 U-box Gene Family AT5G42340 51.4 3.6e-69 260.4
Lcy1g1614 . 9 671 U-box Gene Family AT5G01830 57.3 9.3e-198 687.6
Lcy5g1804 . 1 714 U-box Gene Family AT1G29340 64.2 7.9e-251 864.0
Lcy5g0496 . 3 402 U-box Gene Family AT3G52450 50.8 3.3e-119 426.0
Lcy5g2618 . 3 402 U-box Gene Family AT3G52450 50.8 3.3e-119 426.0
Lcy1g1656 . 10 422 U-box Gene Family AT3G52450 53.0 6.2e-118 421.8
Lcy5g0496 . 2 401 U-box Gene Family AT2G35930 53.7 6.7e-122 434.9
Lcy5g2618 . 2 401 U-box Gene Family AT2G35930 53.7 6.7e-122 434.9
Lcy1g1656 . 9 422 U-box Gene Family AT2G35930 50.7 2.3e-114 409.8
Lcy6g0515 . 1 400 U-box Gene Family AT3G19380 62.9 1.2e-134 477.2
Lcy6g0515 . 1 400 U-box Gene Family AT1G49780 63.1 2.6e-137 486.1
Lcy9g2015 . 1 454 U-box Gene Family AT3G49810 65.1 8.8e-160 560.8
Lcy13g2147 . 1 453 U-box Gene Family AT3G49810 63.1 1.4e-152 537.0
Lcy9g2015 . 1 454 U-box Gene Family AT5G65920 63.7 4.6e-153 538.5
Lcy13g2147 . 1 453 U-box Gene Family AT5G65920 63.7 1.9e-151 533.1
Lcy11g1973 . 1 891 U-box Gene Family AT2G45910 51.3 3.9e-230 795.4
Lcy13g0695 . 38 344 U-box Gene Family AT2G45910 63.9 9.7e-112 402.1
Lcy4g2245 . 4 726 U-box Gene Family AT2G19410 51.1 1.3e-214 743.8
Lcy4g1566 . 364 762 U-box Gene Family AT2G19410 50.1 3.1e-104 377.1
Lcy12g1430 . 25 856 U-box Gene Family AT4G25160 51.9 1.3e-217 753.8
Lcy10g1953 . 1 550 U-box Gene Family AT5G40140 54.4 2.2e-96 350.5
Lcy5g2248 . 29 493 U-box Gene Family AT5G40140 51.9 1.4e-55 214.9
Lcy13g1697 . 1 778 U-box Gene Family AT1G27910 63.2 8.8e-269 923.7
Lcy7g0059 . 32 540 U-box Gene Family AT1G27910 66.7 1.5e-180 630.6
Lcy1g0914 . 1 594 U-box Gene Family AT5G67530 75.2 2.3e-264 908.7
Lcy11g1908 . 2 164 U-box Gene Family AT5G67530 50.9 4.0e-43 173.7
Lcy5g0439 . 12 156 U-box Gene Family AT5G67530 50.3 2.3e-38 157.9
Lcy1g0837 . 54 840 U-box Gene Family AT5G65500 50.6 2.4e-208 723.0
Lcy11g1702 . 79 606 U-box Gene Family AT1G04510 72.7 3.7e-218 755.0
Lcy11g1702 . 79 575 U-box Gene Family AT2G33340 71.5 4.8e-204 708.0
Lcy12g2017 . 5 278 U-box Gene Family AT3G07370 66.1 5.2e-102 368.2
Lcy10g0640 . 1 871 U-box Gene Family AT5G15400 77.2 0.0e+00 1347.0
Lcy10g0639 . 22 202 U-box Gene Family AT5G15400 71.3 6.9e-67 253.4
Lcy8g0814 . 282 924 U-box Gene Family AT2G23140 66.1 2.7e-122 436.8
Lcy13g1697 . 1 775 U-box Gene Family AT1G24330 59.4 8.3e-243 837.4
Lcy7g0059 . 32 540 U-box Gene Family AT1G24330 66.3 4.7e-185 645.6
Lcy13g1697 . 1 774 U-box Gene Family AT1G67530 59.8 2.1e-241 832.8
Lcy7g0059 . 32 540 U-box Gene Family AT1G67530 66.7 2.4e-181 633.3
Lcy1g0403 . 1 362 U-box Gene Family AT4G21350 63.4 2.1e-122 436.4
Lcy5g1148 . 1 339 U-box Gene Family AT4G21350 61.9 3.1e-110 396.0
Lcy12g2016 . 134 457 U-box Gene Family AT3G07360 56.8 4.8e-83 305.4
Lcy7g1209 . 290 485 U-box Gene Family AT1G71020 68.7 6.7e-73 272.3
Lcy10g1442 . 761 965 U-box Gene Family AT1G71020 52.7 2.6e-53 207.2
Lcy11g0195 . 258 427 U-box Gene Family AT1G71020 57.8 1.3e-47 188.3
Lcy7g0632 . 213 416 U-box Gene Family AT1G71020 52.2 1.7e-47 188.0
Lcy8g1815 . 256 426 U-box Gene Family AT1G71020 56.5 8.2e-47 185.7
Lcy7g1209 . 16 689 U-box Gene Family AT1G23030 54.6 2.0e-106 384.0
Lcy11g0195 . 93 632 U-box Gene Family AT2G28830 59.2 5.4e-101 365.9
Lcy8g1815 . 93 635 U-box Gene Family AT2G28830 50.8 5.0e-99 359.4
Lcy11g0195 . 1 634 U-box Gene Family AT3G46510 70.1 6.8e-169 591.7
Lcy8g1815 . 3 633 U-box Gene Family AT3G46510 67.8 3.3e-163 572.8
Lcy7g0632 . 9 623 U-box Gene Family AT3G46510 59.3 4.8e-122 436.0
Lcy7g0632 . 1 625 U-box Gene Family AT3G54850 69.0 1.0e-166 584.3
Lcy8g1815 . 13 629 U-box Gene Family AT3G54850 57.5 3.2e-115 413.3
Lcy11g0195 . 8 627 U-box Gene Family AT3G54850 55.6 8.1e-103 372.1
Lcy8g1307 . 98 650 U-box Gene Family AT5G42340 65.6 5.5e-126 449.1
Lcy7g0632 . 78 622 U-box Gene Family AT5G42340 51.4 3.6e-69 260.4
Lcy1g1614 . 9 671 U-box Gene Family AT5G01830 57.3 9.3e-198 687.6
Lcy5g1804 . 1 714 U-box Gene Family AT1G29340 64.2 7.9e-251 864.0
Lcy5g0496 . 3 402 U-box Gene Family AT3G52450 50.8 3.3e-119 426.0
Lcy5g2618 . 3 402 U-box Gene Family AT3G52450 50.8 3.3e-119 426.0
Lcy1g1656 . 10 422 U-box Gene Family AT3G52450 53.0 6.2e-118 421.8
Lcy5g0496 . 2 401 U-box Gene Family AT2G35930 53.7 6.7e-122 434.9
Lcy5g2618 . 2 401 U-box Gene Family AT2G35930 53.7 6.7e-122 434.9
Lcy1g1656 . 9 422 U-box Gene Family AT2G35930 50.7 2.3e-114 409.8
Lcy6g0515 . 1 400 U-box Gene Family AT3G19380 62.9 1.2e-134 477.2
Lcy6g0515 . 1 400 U-box Gene Family AT1G49780 63.1 2.6e-137 486.1
Lcy9g2015 . 1 454 U-box Gene Family AT3G49810 65.1 8.8e-160 560.8
Lcy13g2147 . 1 453 U-box Gene Family AT3G49810 63.1 1.4e-152 537.0
Lcy9g2015 . 1 454 U-box Gene Family AT5G65920 63.7 4.6e-153 538.5
Lcy13g2147 . 1 453 U-box Gene Family AT5G65920 63.7 1.9e-151 533.1
Lcy11g1973 . 1 891 U-box Gene Family AT2G45910 51.3 3.9e-230 795.4
Lcy13g0695 . 38 344 U-box Gene Family AT2G45910 63.9 9.7e-112 402.1
Lcy4g2245 . 4 726 U-box Gene Family AT2G19410 51.1 1.3e-214 743.8
Lcy4g1566 . 364 762 U-box Gene Family AT2G19410 50.1 3.1e-104 377.1
Lcy12g1430 . 25 856 U-box Gene Family AT4G25160 51.9 1.3e-217 753.8
Lcy10g1953 . 1 550 U-box Gene Family AT5G40140 54.4 2.2e-96 350.5
Lcy5g2248 . 29 493 U-box Gene Family AT5G40140 51.9 1.4e-55 214.9
Lcy13g1697 . 1 778 U-box Gene Family AT1G27910 63.2 8.8e-269 923.7
Lcy7g0059 . 32 540 U-box Gene Family AT1G27910 66.7 1.5e-180 630.6
Lcy1g0914 . 1 594 U-box Gene Family AT5G67530 75.2 2.3e-264 908.7
Lcy11g1908 . 2 164 U-box Gene Family AT5G67530 50.9 4.0e-43 173.7
Lcy5g0439 . 12 156 U-box Gene Family AT5G67530 50.3 2.3e-38 157.9
Lcy1g0837 . 54 840 U-box Gene Family AT5G65500 50.6 2.4e-208 723.0
Lcy11g1702 . 79 606 U-box Gene Family AT1G04510 72.7 3.7e-218 755.0
Lcy11g1702 . 79 575 U-box Gene Family AT2G33340 71.5 4.8e-204 708.0
Lcy12g2017 . 5 278 U-box Gene Family AT3G07370 66.1 5.2e-102 368.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008421 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 1 2 1 35