Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy5g0449 ATGTCCATTAACCATTTCTCTTCCGACTTCCACCGCCACCCCATCATGCTCAACCCCAAATCCTCCTCCACCGCCGCCGTTGCCGTCGCCGACCACCTCCCCAAGCAACCCATGTTCGAGAAACCCTTGACTCCCAGCGACGTTGGCAAGCTCAACCGCCTCGTCATCCCCAAGCAATATGCCGAGAAATACTTTCCCCTCTCCCCCGCCGCCGCCGACTCCGCCGACAAGGGCTTGCTCCTCACCTTCGAAGACGACTCCGGCAAGCTCTGGCGCTTCCGTTACTCTTACTGGAATAGTAGCCAGAGCTACGTGCTCACTAAGGGCTGGAGCCGCTTCGTCAAAGAGAAGCGCCTTGACGCCGGCGACGTCGTCGTTTTTGAACGCCACCGCCGCGATGGGGATAGGCTGTTCATTGGGTGGAAGCGGCGCCCGGAGGCGTCCACGGCGGAGACCACGGCGGCGGCGAGTGGTGGTGGTGGTGGCGGCGGCGGCGGTGGGGGTTGGACTAGAATGTTGTGCTCTGCAAATCCTTATCCTTCTCATCATCATCTTCTTCCTTCACCGCCATACCAATCTTCTGATTGTCCTCATGCAGAAAAACATGATGGATGTGCATTGTTTTCAGAGTCCTCTGTTCAGAGTCAAACAGTGTCGGTTGGGAATTCAAAGATACTGCGGCTGTTCGGAGTGGACTTGGAGTGCCAAACCGACGTGTCGGAACCCGAACCGCCATCGACGTTCACGGGCGGGTCCGGTTTGTCGGGTCGAGATCCGACCCGCCACGGCTTCTACACACATTATTCTTCTCCTCTTCCTCATCACATGACAGATTAG 837 57.59 MSINHFSSDFHRHPIMLNPKSSSTAAVAVADHLPKQPMFEKPLTPSDVGKLNRLVIPKQYAEKYFPLSPAAADSADKGLLLTFEDDSGKLWRFRYSYWNSSQSYVLTKGWSRFVKEKRLDAGDVVVFERHRRDGDRLFIGWKRRPEASTAETTAAASGGGGGGGGGGGWTRMLCSANPYPSHHHLLPSPPYQSSDCPHAEKHDGCALFSESSVQSQTVSVGNSKILRLFGVDLECQTDVSEPEPPSTFTGGSGLSGRDPTRHGFYTHYSSPLPHHMTD 278
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 4695506 4697209 - Maker00033215 Lcy5g0449 632264
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy5g0449 278 Pfam B3 DNA binding domain 39 144 IPR003340 GO:0003677(InterPro)
Lcy5g0449 278 CDD B3_DNA 37 134 IPR003340 GO:0003677(InterPro)
Lcy5g0449 278 Gene3D - 31 157 IPR015300 -
Lcy5g0449 278 SMART B3_2 39 145 IPR003340 GO:0003677(InterPro)
Lcy5g0449 278 MobiDBLite consensus disorder prediction 240 254 - -
Lcy5g0449 278 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 31 233 IPR044800 GO:0003700(InterPro)
Lcy5g0449 278 SUPERFAMILY DNA-binding pseudobarrel domain 34 146 IPR015300 -
Lcy5g0449 278 ProSiteProfiles B3 DNA-binding domain profile. 39 145 IPR003340 GO:0003677(InterPro)
Lcy5g0449 278 MobiDBLite consensus disorder prediction 237 278 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy5g0449 Lcy-Chr5:4695506 Lcy6g0876 Lcy-Chr6:8911119 5.92E-49 dispersed
Lcy5g0449 Lcy-Chr5:4695506 Lcy12g1482 Lcy-Chr12:33788159 9.31E-49 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
20072 None None None None Lcy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy5g0449 K09287 - csv:101214938 390.578