Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lcy5g0496 | ATGGACGAAATCGAAGTCCCCCACTACTTCCTCTGCCCCATCTCCCTCGAGATCATGAAGGATCCCGTCACCCTCCCCTCCGGCATCACCTACGACCGCCACTCCATCGAAACCTGGCTCTTCTCCGACAACCACTCCTCCTGCCCTGTCACCAAGCTCCCCATCTCCCCCGACTCCGACTCCCTCACTCCCAACCACACCCTCCGCCGCTTGATCCAAGCCTGGTGCACTCTCCACTCCTCTCATGGAATCCAACGCTTCCCAACTCCCAAGCCCCCCGTCACCAAGCCCCAGATCCTCAAGCTCATCTCCTCCGCCTCCTCCTCCCCTGACTCCCACCTCTCCTGCATCCGCCGCCTCCGCTCCCTCGCCTCCGACTCCGAAGCCAATCGCCGCTCCCTCCAGTCCGCCGGCGCCCCCGAGTTTCTCGCCTCTCTCGTCGCCTCCTCTGACTCCGCCGTCTCCCACGAAGCCCTCTCCACTCTCCACAACCTCCGCCTCTCCGACTCCAACCTCAAGAGCCTCACCTCCAATGGGGACTTTTTCGATTCCTTGACCAGAGTCATGCAGCAGGGGACCTACGAGTCGAGGGCCTACGCGGTGCTCGTTCTGAAGTCCATGGTCGAAGTCGCCGATTCGGTCGAGCTGACGTTCTTGAAATCCGACTTGTTCGTGGAGATCGTCGGCGTTTTGAAGGACCAGACGACGTCCCCTCAGAGTTTGAAGGCGGCATTGAAGGTTCTGATCGTGGCCTGCCCGTGGGGGAGGAACAGAGTGAAGGCGGTCGAGGCCGGTGGGGTTGGGGCTTTGGTTGAGATCCTACTGGCGGCGGCCGCGGCGGAGAGGAGAGTGTGCGAGATGGCGTTGACGGCGGTGGATTTGCTGTGTGGGTGTGCGGATGGGCGGGCGGCGCTGCTGGGTCACGGCGGAGGGATGGCGGTGGTTTCAAAGAAGATTCTGAGAGTGTCGCAAGTGGGGAGTGAGCGGGCGGTTAGGATTCTGTTCTCGATCGCGAAGTATTCGGGGAGTCCGGCGGTTTTGGCGGAAATGGCGCAGGTGGGGATTGTGGCAAAGCTTTGCCTGGTTCTGCAAGTTGAGAGTGGGAGCAAGACGAAGGAGAAGGCTAAAGAGATTTTGAAGATGCACGCTCGTGTTTGGAGGAATTCGCCTTGCATTCCTTCCAAATTGGTTTCTTCTTATCCCGCAAATTAG | 1212 | 60.15 | MDEIEVPHYFLCPISLEIMKDPVTLPSGITYDRHSIETWLFSDNHSSCPVTKLPISPDSDSLTPNHTLRRLIQAWCTLHSSHGIQRFPTPKPPVTKPQILKLISSASSSPDSHLSCIRRLRSLASDSEANRRSLQSAGAPEFLASLVASSDSAVSHEALSTLHNLRLSDSNLKSLTSNGDFFDSLTRVMQQGTYESRAYAVLVLKSMVEVADSVELTFLKSDLFVEIVGVLKDQTTSPQSLKAALKVLIVACPWGRNRVKAVEAGGVGALVEILLAAAAAERRVCEMALTAVDLLCGCADGRAALLGHGGGMAVVSKKILRVSQVGSERAVRILFSIAKYSGSPAVLAEMAQVGIVAKLCLVLQVESGSKTKEKAKEILKMHARVWRNSPCIPSKLVSSYPAN | 403 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 5 | 5412535 | 5413746 | + | Maker00005384 | Lcy5g0496 | 632311 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lcy5g0496 | 403 | Gene3D | - | 93 | 390 | IPR011989 | - | |
| Lcy5g0496 | 403 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 1 | 86 | IPR013083 | - | |
| Lcy5g0496 | 403 | CDD | RING-Ubox_PUB | 7 | 58 | IPR045210 | - | |
| Lcy5g0496 | 403 | ProSiteProfiles | U-box domain profile. | 5 | 82 | IPR003613 | GO:0004842(InterPro)|GO:0016567(InterPro) | |
| Lcy5g0496 | 403 | SUPERFAMILY | ARM repeat | 98 | 369 | IPR016024 | - | |
| Lcy5g0496 | 403 | SUPERFAMILY | RING/U-box | 3 | 83 | - | - | |
| Lcy5g0496 | 403 | PANTHER | WDSAM1 PROTEIN | 3 | 399 | IPR045185 | GO:0061630(InterPro) | |
| Lcy5g0496 | 403 | SMART | Ubox_2 | 9 | 75 | IPR003613 | GO:0004842(InterPro)|GO:0016567(InterPro) | |
| Lcy5g0496 | 403 | Pfam | U-box domain | 6 | 79 | IPR003613 | GO:0004842(InterPro)|GO:0016567(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Lcy2g1340 | Lcy-Chr2:15075013 | Lcy5g0496 | Lcy-Chr5:5412535 | 5.90E-86 | dispersed | |
| Lcy2g1342 | Lcy-Chr2:15172797 | Lcy5g0496 | Lcy-Chr5:5412535 | 1.37E-88 | dispersed | |
| Lcy5g0496 | Lcy-Chr5:5412535 | Lcy7g1126 | Lcy-Chr7:12510849 | 1.93E-45 | dispersed | |
| Lcy12g2017 | Lcy-Chr12:41562284 | Lcy5g0496 | Lcy-Chr5:5412535 | 8.08E-07 | transposed | |
| Lcy1g1656 | Lcy-Chr1:17068656 | Lcy5g0496 | Lcy-Chr5:5412535 | 1.20E-151 | transposed | |
| Lcy5g0496 | Lcy-Chr5:5412535 | Lcy5g2618 | Lcy-Chr5:49001279 | 4.74E-280 | wgd | |
| Lcy5g0496 | Lcy-Chr5:5412535 | Lcy8g2021 | Lcy-Chr8:46440291 | 5.47E-123 | wgd |
Pathway information