Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy5g0504 ATGAACAACTCCACAGACTCCGGCGGATCGATGTCCTCCGGCGGCGCCGGCAGTTTCCCTTATGTCATCGGAATTTCAGTCGGAATCCTCTTCCTCCTCACAACCCTGACAATCGCCACCTATTTCTGCACCAGAACCACCGTCCCGGCGCCGATTCGCCGTCGTCGGCTGGAGGAACGGCGGGATTTCGTCGTCGATTTCGGACCAGGGCTGGAAGATGAGGCCATTAATGGATATCCGAAGATTCTGTACTCCGAGGCGAAGTTGGACGGGAAATTGGAGTCCGCCGCCGCGAGCGGCTGCTCGATTTGTTTGGGGGATTATAAAAACGGCGACGTTTTGCGGTTGTTGCCGGATTGTGGCCATTTGTTTCACATCGGTTGTATCGATCCGTGGTTACGGCTGAACCCTAGCTGCCCTGTTTGCAGAACGTCGCCGTTGCCGACGCCGATTTCGACCCCTTTGGCGGAGGTGGTTCCGTTGGCCATCGGAAGGAGTTGA 501 56.89 MNNSTDSGGSMSSGGAGSFPYVIGISVGILFLLTTLTIATYFCTRTTVPAPIRRRRLEERRDFVVDFGPGLEDEAINGYPKILYSEAKLDGKLESAAASGCSICLGDYKNGDVLRLLPDCGHLFHIGCIDPWLRLNPSCPVCRTSPLPTPISTPLAEVVPLAIGRS 166
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 5485044 5485544 + Maker00005370 Lcy5g0504 632319
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy5g0504 166 SUPERFAMILY RING/U-box 76 148 - -
Lcy5g0504 166 CDD RING-H2_EL5-like 101 143 - -
Lcy5g0504 166 ProSiteProfiles Zinc finger RING-type profile. 101 143 IPR001841 -
Lcy5g0504 166 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 13 160 IPR045899 -
Lcy5g0504 166 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 64 147 IPR013083 -
Lcy5g0504 166 SMART ring_2 101 142 IPR001841 -
Lcy5g0504 166 Pfam Ring finger domain 101 143 IPR001841 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy11g2006 Lcy-Chr11:43679598 Lcy5g0504 Lcy-Chr5:5485044 3.60E-31 dispersed
Lcy1g1205 Lcy-Chr1:11404976 Lcy5g0504 Lcy-Chr5:5485044 1.04E-60 dispersed
Lcy5g0504 Lcy-Chr5:5485044 Lcy7g0550 Lcy-Chr7:4886976 1.14E-24 dispersed
Lcy5g0504 Lcy-Chr5:5485044 Lcy5g0512 Lcy-Chr5:5649087 9.02E-121 proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy5g0504 - - - 0.0