Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lcy5g0507 | ATGAACGATTTGTTCTCCTCTCGCTCCTTCTCTCGCGACAGCCATGTCGTCGAGATGGGCAACGTCTCCTCCTCCCCTACTGCTGTTAATCTCGACAAGTTCTTTGAAGATGTCGAGTCCGTTAAAGACGAGCTCAAGGAGCTCGAGCGCCTCTACCAGAACCTCCATGACTCCCATGAGCAGAGCAAGACGCTTCACAATGCTAAGGCCGTCAAGGACCTCCGATCTCGCATGGATTCTGATGTTGCCCTTGCTCTCAAGAAGGCCAAGCTCATTAAGGTCCGGTTGGAGGCCCTTGATCGCTCCAATGCCGCCAATCGGAGCCTCCCCGGTTGCGGCCCCGGCTCCTCCTCTGACCGGACTCGGACTTCTGTAGTCAACGGGTTGAGGAAGAAATTGCAGGATTCCATGGAGAGCTTCAACAATCTCAGGCAGCAGATCTCCTCTGAGTACAGGGAGACTGTGCAGCGAAGATATTTCACTGTTACTGGTGAAAATCCGGACGAGAAGACCATTGATATCTTGATTTCTACAGGTGAAAGTGAGACCTTCTTGCAGAAAGCCATTCAAGAGCAAGGTAGAGGCAGAATCTTAGACACCATTAGGGAGATCCAGGAGAGGCATGATGCAGTAAAAGACCTGGAAAGGAACCTCAAGGAGCTGCACCAGGTTTTCTTGGACATGGCAGTCTTGGTGCACGAGCAAGGCGAGAAACTCGACGACATCGAGAGCCAAGTGAACAGGGCTCATTCTTTTGTTCGAGGAGGCACACAGGAGTTGTCGACAGCCAGAGTATACCAGAAAAACACCCGGAAATGGACGATTATTGGCATCATCATTTTGCTGCTCATTGTCCTGGTGATTGTCCTCAGCCTGCAGCCTTGGAAGAAGAACAATAGTACCACTACCACCCCCTAA | 918 | 51.31 | MNDLFSSRSFSRDSHVVEMGNVSSSPTAVNLDKFFEDVESVKDELKELERLYQNLHDSHEQSKTLHNAKAVKDLRSRMDSDVALALKKAKLIKVRLEALDRSNAANRSLPGCGPGSSSDRTRTSVVNGLRKKLQDSMESFNNLRQQISSEYRETVQRRYFTVTGENPDEKTIDILISTGESETFLQKAIQEQGRGRILDTIREIQERHDAVKDLERNLKELHQVFLDMAVLVHEQGEKLDDIESQVNRAHSFVRGGTQELSTARVYQKNTRKWTIIGIIILLLIVLVIVLSLQPWKKNNSTTTTP | 305 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
5 | 5585492 | 5588589 | + | Maker00033053 | Lcy5g0507 | 632322 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lcy5g0507 | 305 | PANTHER | SYNTAXIN | 33 | 280 | IPR045242 | GO:0000149(PANTHER)|GO:0005484(PANTHER)|GO:0005886(PANTHER)|GO:0006886(PANTHER)|GO:0006887(PANTHER)|GO:0006906(PANTHER)|GO:0012505(PANTHER)|GO:0016021(PANTHER)|GO:0031201(PANTHER)|GO:0048278(PANTHER) | |
Lcy5g0507 | 305 | FunFam | Syntaxin 132 | 194 | 293 | - | - | |
Lcy5g0507 | 305 | Pfam | Syntaxin | 33 | 236 | IPR006011 | GO:0016020(InterPro) | |
Lcy5g0507 | 305 | Gene3D | - | 29 | 161 | - | - | |
Lcy5g0507 | 305 | SUPERFAMILY | t-snare proteins | 30 | 256 | IPR010989 | GO:0016020(InterPro)|GO:0016192(InterPro) | |
Lcy5g0507 | 305 | ProSiteProfiles | t-SNARE coiled-coil homology domain profile. | 201 | 263 | IPR000727 | - | |
Lcy5g0507 | 305 | Gene3D | - | 197 | 293 | - | - | |
Lcy5g0507 | 305 | CDD | SynN | 31 | 188 | IPR006011 | GO:0016020(InterPro) | |
Lcy5g0507 | 305 | CDD | SNARE_syntaxin1-like | 200 | 260 | - | - | |
Lcy5g0507 | 305 | SMART | SynN_4 | 26 | 152 | IPR006011 | GO:0016020(InterPro) | |
Lcy5g0507 | 305 | ProSitePatterns | Syntaxin / epimorphin family signature. | 207 | 246 | IPR006012 | GO:0005484(InterPro)|GO:0006886(InterPro)|GO:0016020(InterPro) | |
Lcy5g0507 | 305 | Coils | Coil | 126 | 150 | - | - | |
Lcy5g0507 | 305 | Pfam | SNARE domain | 237 | 289 | IPR000727 | - | |
Lcy5g0507 | 305 | Coils | Coil | 31 | 65 | - | - | |
Lcy5g0507 | 305 | Coils | Coil | 201 | 224 | - | - | |
Lcy5g0507 | 305 | FunFam | Qa-SNARE, Sso1/Syntaxin1-type, SYP12A-group | 28 | 158 | - | - | |
Lcy5g0507 | 305 | SMART | tSNARE_6 | 196 | 263 | IPR000727 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lcy5g0507 | Lcy-Chr5:5585492 | Lcy8g1448 | Lcy-Chr8:41161245 | 1.36E-40 | dispersed | |
Lcy1g0704 | Lcy-Chr1:6032015 | Lcy5g0507 | Lcy-Chr5:5585492 | 1.56E-54 | transposed | |
Lcy1g1665 | Lcy-Chr1:17190631 | Lcy5g0507 | Lcy-Chr5:5585492 | 8.24E-72 | transposed | |
Lcy5g1935 | Lcy-Chr5:42182030 | Lcy5g0507 | Lcy-Chr5:5585492 | 1.05E-112 | transposed | |
Lcy5g2615 | Lcy-Chr5:48884730 | Lcy5g0507 | Lcy-Chr5:5585492 | 9.63E-194 | transposed | |
Lcy1g1206 | Lcy-Chr1:11408108 | Lcy5g0507 | Lcy-Chr5:5585492 | 1.05E-139 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lcy5g0507 | K08486 | - | csv:101208931 | 526.168 |