Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lcy5g0586 | ATGGAGCTGGCTTTGAGCCTTGGTGATGCTTCCATTTCCAATAAGCCATTTGGGTTTCTCTCTAAACCTTCTAATAAGCTTTCTTCTTCTTCTTCTTCCTCTCTAATGGCCTTGGGCTTTTGCGTTGGACTGGCTCATGATTCTGGTTCTGGTTCTGGTTCTGGTTCGGCTTCCGGTTCTGTTCACGATGAAGATGGAAGAGATCTTCAAGATGAAGAAGATGATGAGGAAGAAGATGGAAAAACCGTTCTTCCCGGTTCGGCCTCCGGTTTGGATCCGCCGGTTCAGCTGGATCTTCTTCCTTTGGCTCCTGTTCCTCGTTCTTCTCATCCGCCTTCTTCTTACCTTCGATTTCCTTGGCTTTCTGATCACTTGATGCCGGAGCTGGGTTGTTCAGAGGGAGCAGAGAGGGTGTTGGATGTGAACCGGGTGCCGGCGGTGGCAATGATACCGGCGGAGGAGACAGACGAGAGGACGGCGGCGGCGCTGTCGTCTCCGAACAGTACGGTTTCGTCTTTTCAGATGGATTTTGGAGTGAGAAATGGAGGAGGAGGATCGAGAAGTAAGAGATCATCAGATTTGGAAATGGAGACTGAGAGAGCTTCGTCGAGAATCAGTGACGATGAAGAGAACGGATCAGCTCGGAAAAAGCTTCGACTTTCTAAAGAACAATCGGCTTTTCTCGAAGAAAGCTTCAAAGAACACAGCACCCTAAATCCTAAGCAGAAGCTAGCACTAGCTAAGCAGCTAAACCTCCGACCTAGGCAAGTGGAAGTTTGGTTTCAAAACAGAAGAGCAAGGACAAAGTTGAAGCAGACAGAAGTAGATTGTGAGTATTTAAGGAGATGCTGTGAGACATTGACAGAAGAGAACAGAAGATTACAAAAGGAACTTCAAGAATTAAGAGCCTTGAAAACTTCTCAGCCCTTTTATATGCAGCTTCCAGCCACCACTCTCACCATGTGCCCGTCGTGCGAGCGCGTCGCCACCACCGCTCCTACCGCCACCAAAACTACCACCACCACCACTGCCCCCGCCCCGAACCCGTCCGCTCTTTGCCTCGCCAACAAGCCGAGGATCTTGCCATTCCCTCACTTGCACCAGGCTGCTTCATGA | 1116 | 49.82 | MELALSLGDASISNKPFGFLSKPSNKLSSSSSSSLMALGFCVGLAHDSGSGSGSGSASGSVHDEDGRDLQDEEDDEEEDGKTVLPGSASGLDPPVQLDLLPLAPVPRSSHPPSSYLRFPWLSDHLMPELGCSEGAERVLDVNRVPAVAMIPAEETDERTAAALSSPNSTVSSFQMDFGVRNGGGGSRSKRSSDLEMETERASSRISDDEENGSARKKLRLSKEQSAFLEESFKEHSTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLRRCCETLTEENRRLQKELQELRALKTSQPFYMQLPATTLTMCPSCERVATTAPTATKTTTTTTAPAPNPSALCLANKPRILPFPHLHQAAS | 371 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
5 | 6679979 | 6682660 | - | Maker00033066 | Lcy5g0586 | 632401 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lcy5g0586 | 371 | CDD | bZIP | 264 | 303 | - | - | |
Lcy5g0586 | 371 | MobiDBLite | consensus disorder prediction | 17 | 32 | - | - | |
Lcy5g0586 | 371 | SMART | HOX_1 | 213 | 275 | IPR001356 | GO:0003677(InterPro) | |
Lcy5g0586 | 371 | Pfam | Homeodomain | 215 | 269 | IPR001356 | GO:0003677(InterPro) | |
Lcy5g0586 | 371 | MobiDBLite | consensus disorder prediction | 48 | 104 | - | - | |
Lcy5g0586 | 371 | MobiDBLite | consensus disorder prediction | 163 | 218 | - | - | |
Lcy5g0586 | 371 | ProSitePatterns | 'Homeobox' domain signature. | 246 | 269 | IPR017970 | GO:0000981(InterPro)|GO:0006355(InterPro) | |
Lcy5g0586 | 371 | ProSiteProfiles | 'Homeobox' domain profile. | 211 | 271 | IPR001356 | GO:0003677(InterPro) | |
Lcy5g0586 | 371 | PANTHER | HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14 | 76 | 344 | IPR050762 | - | |
Lcy5g0586 | 371 | Coils | Coil | 277 | 307 | - | - | |
Lcy5g0586 | 371 | MobiDBLite | consensus disorder prediction | 13 | 32 | - | - | |
Lcy5g0586 | 371 | CDD | homeodomain | 215 | 272 | IPR001356 | GO:0003677(InterPro) | |
Lcy5g0586 | 371 | FunFam | Homeobox-leucine zipper protein 18 | 199 | 276 | - | - | |
Lcy5g0586 | 371 | SUPERFAMILY | Homeodomain-like | 213 | 280 | IPR009057 | - | |
Lcy5g0586 | 371 | SMART | halz | 271 | 314 | IPR003106 | GO:0006355(InterPro)|GO:0043565(InterPro) | |
Lcy5g0586 | 371 | MobiDBLite | consensus disorder prediction | 190 | 218 | - | - | |
Lcy5g0586 | 371 | Pfam | HD-ZIP protein N terminus | 137 | 173 | IPR006712 | GO:0005634(InterPro) | |
Lcy5g0586 | 371 | Pfam | Homeobox associated leucine zipper | 271 | 305 | IPR003106 | GO:0006355(InterPro)|GO:0043565(InterPro) | |
Lcy5g0586 | 371 | Gene3D | - | 219 | 269 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lcy12g0488 | Lcy-Chr12:5898735 | Lcy5g0586 | Lcy-Chr5:6679979 | 1.33E-58 | dispersed | |
Lcy1g0879 | Lcy-Chr1:7567121 | Lcy5g0586 | Lcy-Chr5:6679979 | 1.24E-69 | dispersed | |
Lcy5g0586 | Lcy-Chr5:6679979 | Lcy6g2126 | Lcy-Chr6:45004693 | 1.78E-67 | dispersed | |
Lcy5g0586 | Lcy-Chr5:6679979 | Lcy3g1945 | Lcy-Chr3:46602999 | 1.11E-92 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
20080 | None | None | None | None | Lcy | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lcy5g0586 | K09338 | - | csv:101222778 | 409.453 |