Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy5g0586 ATGGAGCTGGCTTTGAGCCTTGGTGATGCTTCCATTTCCAATAAGCCATTTGGGTTTCTCTCTAAACCTTCTAATAAGCTTTCTTCTTCTTCTTCTTCCTCTCTAATGGCCTTGGGCTTTTGCGTTGGACTGGCTCATGATTCTGGTTCTGGTTCTGGTTCTGGTTCGGCTTCCGGTTCTGTTCACGATGAAGATGGAAGAGATCTTCAAGATGAAGAAGATGATGAGGAAGAAGATGGAAAAACCGTTCTTCCCGGTTCGGCCTCCGGTTTGGATCCGCCGGTTCAGCTGGATCTTCTTCCTTTGGCTCCTGTTCCTCGTTCTTCTCATCCGCCTTCTTCTTACCTTCGATTTCCTTGGCTTTCTGATCACTTGATGCCGGAGCTGGGTTGTTCAGAGGGAGCAGAGAGGGTGTTGGATGTGAACCGGGTGCCGGCGGTGGCAATGATACCGGCGGAGGAGACAGACGAGAGGACGGCGGCGGCGCTGTCGTCTCCGAACAGTACGGTTTCGTCTTTTCAGATGGATTTTGGAGTGAGAAATGGAGGAGGAGGATCGAGAAGTAAGAGATCATCAGATTTGGAAATGGAGACTGAGAGAGCTTCGTCGAGAATCAGTGACGATGAAGAGAACGGATCAGCTCGGAAAAAGCTTCGACTTTCTAAAGAACAATCGGCTTTTCTCGAAGAAAGCTTCAAAGAACACAGCACCCTAAATCCTAAGCAGAAGCTAGCACTAGCTAAGCAGCTAAACCTCCGACCTAGGCAAGTGGAAGTTTGGTTTCAAAACAGAAGAGCAAGGACAAAGTTGAAGCAGACAGAAGTAGATTGTGAGTATTTAAGGAGATGCTGTGAGACATTGACAGAAGAGAACAGAAGATTACAAAAGGAACTTCAAGAATTAAGAGCCTTGAAAACTTCTCAGCCCTTTTATATGCAGCTTCCAGCCACCACTCTCACCATGTGCCCGTCGTGCGAGCGCGTCGCCACCACCGCTCCTACCGCCACCAAAACTACCACCACCACCACTGCCCCCGCCCCGAACCCGTCCGCTCTTTGCCTCGCCAACAAGCCGAGGATCTTGCCATTCCCTCACTTGCACCAGGCTGCTTCATGA 1116 49.82 MELALSLGDASISNKPFGFLSKPSNKLSSSSSSSLMALGFCVGLAHDSGSGSGSGSASGSVHDEDGRDLQDEEDDEEEDGKTVLPGSASGLDPPVQLDLLPLAPVPRSSHPPSSYLRFPWLSDHLMPELGCSEGAERVLDVNRVPAVAMIPAEETDERTAAALSSPNSTVSSFQMDFGVRNGGGGSRSKRSSDLEMETERASSRISDDEENGSARKKLRLSKEQSAFLEESFKEHSTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLRRCCETLTEENRRLQKELQELRALKTSQPFYMQLPATTLTMCPSCERVATTAPTATKTTTTTTAPAPNPSALCLANKPRILPFPHLHQAAS 371
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 6679979 6682660 - Maker00033066 Lcy5g0586 632401
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy5g0586 371 CDD bZIP 264 303 - -
Lcy5g0586 371 MobiDBLite consensus disorder prediction 17 32 - -
Lcy5g0586 371 SMART HOX_1 213 275 IPR001356 GO:0003677(InterPro)
Lcy5g0586 371 Pfam Homeodomain 215 269 IPR001356 GO:0003677(InterPro)
Lcy5g0586 371 MobiDBLite consensus disorder prediction 48 104 - -
Lcy5g0586 371 MobiDBLite consensus disorder prediction 163 218 - -
Lcy5g0586 371 ProSitePatterns 'Homeobox' domain signature. 246 269 IPR017970 GO:0000981(InterPro)|GO:0006355(InterPro)
Lcy5g0586 371 ProSiteProfiles 'Homeobox' domain profile. 211 271 IPR001356 GO:0003677(InterPro)
Lcy5g0586 371 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14 76 344 IPR050762 -
Lcy5g0586 371 Coils Coil 277 307 - -
Lcy5g0586 371 MobiDBLite consensus disorder prediction 13 32 - -
Lcy5g0586 371 CDD homeodomain 215 272 IPR001356 GO:0003677(InterPro)
Lcy5g0586 371 FunFam Homeobox-leucine zipper protein 18 199 276 - -
Lcy5g0586 371 SUPERFAMILY Homeodomain-like 213 280 IPR009057 -
Lcy5g0586 371 SMART halz 271 314 IPR003106 GO:0006355(InterPro)|GO:0043565(InterPro)
Lcy5g0586 371 MobiDBLite consensus disorder prediction 190 218 - -
Lcy5g0586 371 Pfam HD-ZIP protein N terminus 137 173 IPR006712 GO:0005634(InterPro)
Lcy5g0586 371 Pfam Homeobox associated leucine zipper 271 305 IPR003106 GO:0006355(InterPro)|GO:0043565(InterPro)
Lcy5g0586 371 Gene3D - 219 269 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy12g0488 Lcy-Chr12:5898735 Lcy5g0586 Lcy-Chr5:6679979 1.33E-58 dispersed
Lcy1g0879 Lcy-Chr1:7567121 Lcy5g0586 Lcy-Chr5:6679979 1.24E-69 dispersed
Lcy5g0586 Lcy-Chr5:6679979 Lcy6g2126 Lcy-Chr6:45004693 1.78E-67 dispersed
Lcy5g0586 Lcy-Chr5:6679979 Lcy3g1945 Lcy-Chr3:46602999 1.11E-92 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
20080 None None None None Lcy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy5g0586 K09338 - csv:101222778 409.453