Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lcy5g0587 | ATGGGTGACGAAATCTTTGATGCAATGAACCTTGACTTGAATCTGGGTCCTATTCCAGAGCCGCTTTCAAACCCGGTTCCAAATGAAGATGTGAATTTATCTGATTTGACAGAGGATCCTGTTCATAGATTTGGGGAAGCCATCAGGTTTAGGACGAGACATCGATGGAGAAGGCGTCAAGTTCAAATTCCTTCTGAGACTCAGAATATTTCAATGGAATTGAGTGAAATTATGGTCAATTCCGGCAATGGGAATTCATTACAGCCATTACAGGCTGGTGAGGGTAGTATTACTGCTGAGGAAAGGAAAAATGAGGCAGGGAAAACATGTGAAATTAACAATGAAGCTTTGGAAGATGAAAAGACAGAGAATAAGAGTGATGTTGAAAAGGGCAGTGATTCTGATGGGAGTTTCTTTGATTGCAACATATGTTTGGACTTGGCTAGGGACCCTGTAGTAACTTGTTGTGGTCATCTATACTGCTGGCCATGCCTTTATCGATGGTTACATCTGCATTCAGATGCCAAGGAATGTCCTGTATGTAAAGGAGAGGTTACTACGAAGAGTGTGACCCCAATTTATGGGCGTGGCAGCAATACCCCTGTGACAGAGGAGGATGCCACGCTTAAGATTCCTCTAAGGCCCCATGCTCGGAAGGTTGAAAGTTTGAGGCAAACCATTCAGAGGACTGCATTTGGTTTCCCAGTGGAGGAGATGATCCGTCGATTGGGAAACAGATTTGATTTCCATCGGGACCTAGACCAACCACCAGAGCCAGACAGTTCACATGAAACGTTTGGTAGATCTTCAACCTTGTTGAATAGGATTTTGACGTCCAGGGGCATTCGTAGAGAACAAATTTCATTGCCTCCCCATGATGATGTAGGTGATTTAGCACACGCTGATGTGCCTGGCATTGAGGCAGGGGAAACCCGTCTTCAATCTCTCCCAGTGCTTCGATCATTGCTACACAGGACAAGAGTTTCTTCTCTTACTTCTGCATTTAATTCTGCTGATAGGCTTCCAGATGGATTTTTGTATACCGATCCACTTGTTCCTAGAAATCAAGAGCAGCCTCCTCCACCTGTCGAGGATAGAGATTCTTTCTCTAGCATTGCTGCTGTTATCAATTCAGAGAGTCAAATGGACACTGCTGTAGAAATTGATTCCATGGTCTCCCTTTCAACATCATCCTCCAGAAGGAGAAATGATCCTTTACAGGTTTCTGATGTAGACAGTGGAAACTCTCGGGCACCCAGACGGAGAAGATTGGCTTAA | 1278 | 44.44 | MGDEIFDAMNLDLNLGPIPEPLSNPVPNEDVNLSDLTEDPVHRFGEAIRFRTRHRWRRRQVQIPSETQNISMELSEIMVNSGNGNSLQPLQAGEGSITAEERKNEAGKTCEINNEALEDEKTENKSDVEKGSDSDGSFFDCNICLDLARDPVVTCCGHLYCWPCLYRWLHLHSDAKECPVCKGEVTTKSVTPIYGRGSNTPVTEEDATLKIPLRPHARKVESLRQTIQRTAFGFPVEEMIRRLGNRFDFHRDLDQPPEPDSSHETFGRSSTLLNRILTSRGIRREQISLPPHDDVGDLAHADVPGIEAGETRLQSLPVLRSLLHRTRVSSLTSAFNSADRLPDGFLYTDPLVPRNQEQPPPPVEDRDSFSSIAAVINSESQMDTAVEIDSMVSLSTSSSRRRNDPLQVSDVDSGNSRAPRRRRLA | 425 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
5 | 6701722 | 6702999 | - | Maker00033015 | Lcy5g0587 | 632402 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lcy5g0587 | 425 | SMART | ring_2 | 141 | 181 | IPR001841 | - | |
Lcy5g0587 | 425 | FunFam | Zinc finger family protein | 122 | 195 | - | - | |
Lcy5g0587 | 425 | MobiDBLite | consensus disorder prediction | 347 | 367 | - | - | |
Lcy5g0587 | 425 | MobiDBLite | consensus disorder prediction | 393 | 414 | - | - | |
Lcy5g0587 | 425 | SUPERFAMILY | RING/U-box | 137 | 194 | - | - | |
Lcy5g0587 | 425 | MobiDBLite | consensus disorder prediction | 393 | 425 | - | - | |
Lcy5g0587 | 425 | CDD | RING-HC_AtRMA-like | 139 | 182 | - | - | |
Lcy5g0587 | 425 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 91 | 201 | IPR013083 | - | |
Lcy5g0587 | 425 | Pfam | RING-type zinc-finger | 141 | 179 | IPR027370 | - | |
Lcy5g0587 | 425 | ProSitePatterns | Zinc finger RING-type signature. | 156 | 165 | IPR017907 | - | |
Lcy5g0587 | 425 | ProSiteProfiles | Zinc finger RING-type profile. | 141 | 182 | IPR001841 | - | |
Lcy5g0587 | 425 | PANTHER | E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED | 108 | 299 | IPR045103 | GO:0005783(InterPro)|GO:0006511(PANTHER)|GO:0006511(InterPro)|GO:0044390(PANTHER)|GO:0061630(PANTHER)|GO:0061630(InterPro)|GO:0071712(PANTHER) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lcy10g0046 | Lcy-Chr10:691183 | Lcy5g0587 | Lcy-Chr5:6701722 | 1.48E-06 | dispersed | |
Lcy12g0489 | Lcy-Chr12:5911978 | Lcy5g0587 | Lcy-Chr5:6701722 | 2.47E-34 | dispersed | |
Lcy1g0346 | Lcy-Chr1:3114724 | Lcy5g0587 | Lcy-Chr5:6701722 | 1.43E-23 | dispersed | |
Lcy1g1061 | Lcy-Chr1:9577335 | Lcy5g0587 | Lcy-Chr5:6701722 | 4.33E-26 | dispersed | |
Lcy5g0587 | Lcy-Chr5:6701722 | Lcy9g1291 | Lcy-Chr9:37595083 | 6.24E-24 | dispersed | |
Lcy5g0587 | Lcy-Chr5:6701722 | Lcy5g1890 | Lcy-Chr5:41732724 | 5.04E-28 | transposed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lcy5g0587 | K10666 | - | csv:101220497 | 780.4 |