Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy5g0587 ATGGGTGACGAAATCTTTGATGCAATGAACCTTGACTTGAATCTGGGTCCTATTCCAGAGCCGCTTTCAAACCCGGTTCCAAATGAAGATGTGAATTTATCTGATTTGACAGAGGATCCTGTTCATAGATTTGGGGAAGCCATCAGGTTTAGGACGAGACATCGATGGAGAAGGCGTCAAGTTCAAATTCCTTCTGAGACTCAGAATATTTCAATGGAATTGAGTGAAATTATGGTCAATTCCGGCAATGGGAATTCATTACAGCCATTACAGGCTGGTGAGGGTAGTATTACTGCTGAGGAAAGGAAAAATGAGGCAGGGAAAACATGTGAAATTAACAATGAAGCTTTGGAAGATGAAAAGACAGAGAATAAGAGTGATGTTGAAAAGGGCAGTGATTCTGATGGGAGTTTCTTTGATTGCAACATATGTTTGGACTTGGCTAGGGACCCTGTAGTAACTTGTTGTGGTCATCTATACTGCTGGCCATGCCTTTATCGATGGTTACATCTGCATTCAGATGCCAAGGAATGTCCTGTATGTAAAGGAGAGGTTACTACGAAGAGTGTGACCCCAATTTATGGGCGTGGCAGCAATACCCCTGTGACAGAGGAGGATGCCACGCTTAAGATTCCTCTAAGGCCCCATGCTCGGAAGGTTGAAAGTTTGAGGCAAACCATTCAGAGGACTGCATTTGGTTTCCCAGTGGAGGAGATGATCCGTCGATTGGGAAACAGATTTGATTTCCATCGGGACCTAGACCAACCACCAGAGCCAGACAGTTCACATGAAACGTTTGGTAGATCTTCAACCTTGTTGAATAGGATTTTGACGTCCAGGGGCATTCGTAGAGAACAAATTTCATTGCCTCCCCATGATGATGTAGGTGATTTAGCACACGCTGATGTGCCTGGCATTGAGGCAGGGGAAACCCGTCTTCAATCTCTCCCAGTGCTTCGATCATTGCTACACAGGACAAGAGTTTCTTCTCTTACTTCTGCATTTAATTCTGCTGATAGGCTTCCAGATGGATTTTTGTATACCGATCCACTTGTTCCTAGAAATCAAGAGCAGCCTCCTCCACCTGTCGAGGATAGAGATTCTTTCTCTAGCATTGCTGCTGTTATCAATTCAGAGAGTCAAATGGACACTGCTGTAGAAATTGATTCCATGGTCTCCCTTTCAACATCATCCTCCAGAAGGAGAAATGATCCTTTACAGGTTTCTGATGTAGACAGTGGAAACTCTCGGGCACCCAGACGGAGAAGATTGGCTTAA 1278 44.44 MGDEIFDAMNLDLNLGPIPEPLSNPVPNEDVNLSDLTEDPVHRFGEAIRFRTRHRWRRRQVQIPSETQNISMELSEIMVNSGNGNSLQPLQAGEGSITAEERKNEAGKTCEINNEALEDEKTENKSDVEKGSDSDGSFFDCNICLDLARDPVVTCCGHLYCWPCLYRWLHLHSDAKECPVCKGEVTTKSVTPIYGRGSNTPVTEEDATLKIPLRPHARKVESLRQTIQRTAFGFPVEEMIRRLGNRFDFHRDLDQPPEPDSSHETFGRSSTLLNRILTSRGIRREQISLPPHDDVGDLAHADVPGIEAGETRLQSLPVLRSLLHRTRVSSLTSAFNSADRLPDGFLYTDPLVPRNQEQPPPPVEDRDSFSSIAAVINSESQMDTAVEIDSMVSLSTSSSRRRNDPLQVSDVDSGNSRAPRRRRLA 425
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 6701722 6702999 - Maker00033015 Lcy5g0587 632402
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy5g0587 425 SMART ring_2 141 181 IPR001841 -
Lcy5g0587 425 FunFam Zinc finger family protein 122 195 - -
Lcy5g0587 425 MobiDBLite consensus disorder prediction 347 367 - -
Lcy5g0587 425 MobiDBLite consensus disorder prediction 393 414 - -
Lcy5g0587 425 SUPERFAMILY RING/U-box 137 194 - -
Lcy5g0587 425 MobiDBLite consensus disorder prediction 393 425 - -
Lcy5g0587 425 CDD RING-HC_AtRMA-like 139 182 - -
Lcy5g0587 425 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 91 201 IPR013083 -
Lcy5g0587 425 Pfam RING-type zinc-finger 141 179 IPR027370 -
Lcy5g0587 425 ProSitePatterns Zinc finger RING-type signature. 156 165 IPR017907 -
Lcy5g0587 425 ProSiteProfiles Zinc finger RING-type profile. 141 182 IPR001841 -
Lcy5g0587 425 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 108 299 IPR045103 GO:0005783(InterPro)|GO:0006511(PANTHER)|GO:0006511(InterPro)|GO:0044390(PANTHER)|GO:0061630(PANTHER)|GO:0061630(InterPro)|GO:0071712(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy10g0046 Lcy-Chr10:691183 Lcy5g0587 Lcy-Chr5:6701722 1.48E-06 dispersed
Lcy12g0489 Lcy-Chr12:5911978 Lcy5g0587 Lcy-Chr5:6701722 2.47E-34 dispersed
Lcy1g0346 Lcy-Chr1:3114724 Lcy5g0587 Lcy-Chr5:6701722 1.43E-23 dispersed
Lcy1g1061 Lcy-Chr1:9577335 Lcy5g0587 Lcy-Chr5:6701722 4.33E-26 dispersed
Lcy5g0587 Lcy-Chr5:6701722 Lcy9g1291 Lcy-Chr9:37595083 6.24E-24 dispersed
Lcy5g0587 Lcy-Chr5:6701722 Lcy5g1890 Lcy-Chr5:41732724 5.04E-28 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy5g0587 K10666 - csv:101220497 780.4