Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy5g0597 ATGGCAGATTCCGAGGATATTCAGCCTCTCGTTTGCGATAATGGAACAGGGATGGTTAAGGCTGGATTTGCTGGAGACGATGCTCCAAGGGCTGTATTCCCCAGCATCGTCGGTCGTCCCAGGCACACTGGTGTTATGGTTGGTATGGGCCAAAAGGATGCCTATGTTGGTGATGAGGCTCAATCGAAGAGAGGTATTTTGACTTTAAAATATCCCATTGAGCATGGTATCGTTAGCAATTGGGATGATATGGAGAAAATTTGGCATCACACTTTCTACAACGAGCTTCGAGTTGCTCCAGAAGAGCATCCAGTTCTGCTCACAGAAGCACCCTTGAATCCCAAGGCGAATAGAGAGAAAATGACCCAAATAATGTTTGAGACTTTCAACACCCCCGCCATGTATGTTGCTATCCAGGCCGTCCTTTCCCTTTATGCCAGTGGTCGAACAACCGGAATCGTTTTGGATTCTGGTGATGGTGTCAGCCACACTGTTCCAATCTACGAAGGCTATGCTCTCCCACATGCCATCCTCCGTCTAGACCTGGCTGGTCGTGATCTCACAGATGCTCTAATGAAAATCTTGACTGAACGTGGTTACTCTTTCACCACCTCCGCGGAGCGTGAAATTGTGAGAGATATGAAGGAGAAACTAGCTTACATAGCCCTGGACTTCGAGCAAGAGCTAGAGACATCAAAAACCAGCTCTTCTGTGGAGAAGAGCTATGAACTACCAGATGGGCAGGTGATCACCATTGGTGCTGAAAGATTCCGATGCCCTGAAGTCCTCTTCCAGCCATCCATGATTGGAATGGAAGCAGCTGGTATTCATGAAACCACATACAATTCTATCATGAAGTGTGATGTCGACATTAGAAAGGATCTCTATGGCAATATTGTCCTCAGTGGTGGTTCCACCATGTTCCCTGGCATTGCTGACAGGATGAGCAAGGAGATCACTGCATTGGCTCCTAGTAGCATGAAGATCAAAGTGGTAGCTCCACCTGAAAGAAAGTACAGTGTCTGGATCGGAGGCTCCATTTTAGCTTCCCTCAGCACTTTCCAACAGATGTGGATTGCTAAAGCGGAATATGATGAATCTGGGCCATCGATTGTCCACAGGAAATGCTTCTGA 1134 47.27 MADSEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGYSFTTSAEREIVRDMKEKLAYIALDFEQELETSKTSSSVEKSYELPDGQVITIGAERFRCPEVLFQPSMIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIAKAEYDESGPSIVHRKCF 377
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 6867794 6871883 + Maker00033010 Lcy5g0597 632412
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy5g0597 377 FunFam Major actin 260 340 - -
Lcy5g0597 377 CDD NBD_sugar-kinase_HSP70_actin 10 183 - -
Lcy5g0597 377 PRINTS Actin signature 51 62 IPR004000 -
Lcy5g0597 377 PRINTS Actin signature 238 254 IPR004000 -
Lcy5g0597 377 PRINTS Actin signature 63 85 IPR004000 -
Lcy5g0597 377 PRINTS Actin signature 142 161 IPR004000 -
Lcy5g0597 377 PRINTS Actin signature 28 37 IPR004000 -
Lcy5g0597 377 PRINTS Actin signature 117 130 IPR004000 -
Lcy5g0597 377 FunFam Putative actin-related protein 5 341 369 - -
Lcy5g0597 377 Pfam Actin 5 377 IPR004000 -
Lcy5g0597 377 Gene3D Actin; Chain A, domain 4 182 273 - -
Lcy5g0597 377 SUPERFAMILY Actin-like ATPase domain 149 377 IPR043129 -
Lcy5g0597 377 FunFam Actin, muscle 182 273 - -
Lcy5g0597 377 FunFam Actin, alpha skeletal muscle 3 178 - -
Lcy5g0597 377 ProSitePatterns Actins signature 2. 358 366 IPR004001 -
Lcy5g0597 377 SMART actin_3 7 377 IPR004000 -
Lcy5g0597 377 ProSitePatterns Actins and actin-related proteins signature. 106 118 IPR020902 -
Lcy5g0597 377 Gene3D - 140 340 - -
Lcy5g0597 377 SUPERFAMILY Actin-like ATPase domain 6 155 IPR043129 -
Lcy5g0597 377 Gene3D - 10 371 - -
Lcy5g0597 377 PANTHER ACTIN 8 369 IPR004000 GO:0005737(PANTHER)
Lcy5g0597 377 ProSitePatterns Actins signature 1. 55 65 IPR004001 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy10g1858 Lcy-Chr10:42794633 Lcy5g0597 Lcy-Chr5:6867794 2.60E-273 dispersed
Lcy4g0291 Lcy-Chr4:3562557 Lcy5g0597 Lcy-Chr5:6867794 2.79E-268 dispersed
Lcy5g0597 Lcy-Chr5:6867794 Lcy7g0882 Lcy-Chr7:8799316 7.66E-256 dispersed
Lcy5g0597 Lcy-Chr5:6867794 Lcy1g1441 Lcy-Chr1:13981352 7.99E-256 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy5g0597 K10355 - mdm:103443130 747.658