Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy5g0598 ATGTTTTCGTGGCTGGCAAGGATGGCGTCGGCTTGTTGGAAACCAGTGAGACGGTATGCCCGTATGAACAAGGATGATGATGAAGATTGCTCATTAGAGGACTCGTTGTTGTGGAGCAGAGAGCTTGAAAAGCACTCTAATGGAGAGTTTTCTTTCGCTGTAGTTCAGGCGAATGAGATAATTGAGGATAATAGTCAGGTTGAGACTGGCCGCGATGCCACTTTCGTCGGCGTTTATGATGGCCATGGTGGCCCTGATGCTTCTCGCTTCATCTGTGATCATCTTTTCAGGAATCTGATGAGTGAGTCTTCAAGGGTTGCCTCTTTGCTTCCATTTCTTTCCTTTTGGCTTGCTCAAGAAAATGGAACGATAACCGAAGATATCATAAGAAGTGCATTTTCTGCAACTGAGGAAGGGTTTCTTACTCTTGTTCGTCGGTCATGGGGAATAAAACCAACAATTGCAGCCATGGGATCTTGTTGCCTGGTGGGAGTTATCTGGAGAGGTACATTATACGTCGGTAACGTCGGTGATTCCCGGGCTGTTATTGGTTCTTTAGGTAAATCTAATAAGATAGTTGCAGAACAGTTGACAAGGGATCACAATGCAAGTATTGAGGAGGTTAGACAAGAACTCAGGTCCTTGCATCCAGATGACTCACATATCGTTGTTATGAAGCATGGAGTGTGGCGTATAAAAGGCATCATTCAGGTTTCCAGATCGATAGGTGATGCTTATTTGAAAAGGCCAGAGTTCTCTCTCGATCCATCCTTTCCACGATTCCACCTTGCAGAGCCTCTTCGACGGCCTGTTCTTACAGCCGAACCATCGATAAGTACAAGAGTTCTACAACCCAATGACAAATTTCTCATATTTGCATCTGATGGCCTTTGGGAGCATCTATCGAATCAACAAGCTGTCGAGATTGTGTATAATAACCCACGAGCAGGAATTGCAAAAAAACTTGTCAAAACAGCACTAACTGAGGCCGCAAGGAAGAGAGAGATGAGATATGATGATCTCAAGAAGCTCGAGAAGGGCATACGACGGTTCTTTCACGACGATATCACAGTTGTTGTCATCTTTCTGGACCATGAGTTGCAAGGGAAGAAGGCACATGTACCAGAATTATCCGTTCGTGGGTTCACTGACACCGTTGGACCGTCGAATTTCAACGTTCTTCGAGGCATCGATGAGAATGGAAGGTCTGTTGGCTGA 1218 45.24 MFSWLARMASACWKPVRRYARMNKDDDEDCSLEDSLLWSRELEKHSNGEFSFAVVQANEIIEDNSQVETGRDATFVGVYDGHGGPDASRFICDHLFRNLMSESSRVASLLPFLSFWLAQENGTITEDIIRSAFSATEEGFLTLVRRSWGIKPTIAAMGSCCLVGVIWRGTLYVGNVGDSRAVIGSLGKSNKIVAEQLTRDHNASIEEVRQELRSLHPDDSHIVVMKHGVWRIKGIIQVSRSIGDAYLKRPEFSLDPSFPRFHLAEPLRRPVLTAEPSISTRVLQPNDKFLIFASDGLWEHLSNQQAVEIVYNNPRAGIAKKLVKTALTEAARKREMRYDDLKKLEKGIRRFFHDDITVVVIFLDHELQGKKAHVPELSVRGFTDTVGPSNFNVLRGIDENGRSVG 405
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 6873031 6876378 - Maker00033008 Lcy5g0598 632413
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy5g0598 405 FunFam Probable protein phosphatase 2C 42 40 371 - -
Lcy5g0598 405 SMART PP2C_4 41 361 IPR001932 -
Lcy5g0598 405 PANTHER PROTEIN PHOSPHATASE 40 362 IPR015655 GO:0004722(PANTHER)|GO:0004722(InterPro)|GO:0006470(InterPro)|GO:0035970(PANTHER)
Lcy5g0598 405 Pfam Protein phosphatase 2C 68 332 IPR001932 -
Lcy5g0598 405 ProSitePatterns PPM-type phosphatase domain signature. 75 83 IPR000222 GO:0043169(InterPro)
Lcy5g0598 405 SUPERFAMILY PP2C-like 55 364 IPR036457 -
Lcy5g0598 405 CDD PP2Cc 50 363 IPR001932 -
Lcy5g0598 405 Gene3D - 30 373 IPR036457 -
Lcy5g0598 405 ProSiteProfiles PPM-type phosphatase domain profile. 49 363 IPR001932 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy5g0598 Lcy-Chr5:6873031 Lcy8g1268 Lcy-Chr8:39272682 7.25E-142 dispersed
Lcy4g0184 Lcy-Chr4:2362250 Lcy5g0598 Lcy-Chr5:6873031 1.18E-43 transposed
Lcy12g0857 Lcy-Chr12:11843620 Lcy5g0598 Lcy-Chr5:6873031 9.53E-127 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy5g0598 K01102 - csv:101222146 736.873