Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy5g0600 ATGGAAATCGACTCACAAAAGAATCTCCAGCGCAAGCAGTGTACCTATCAAATATCGGATGAGCAGTACAAGGTTCAGAAGGAGACGTACAGGGGCCAGCAATACAGTCACATTTACTTCGCTCGACTCCACTTGATGAGAACGATACTCCATTCACTTGTCTCTAAGTGGAAACCTCATTTACCTGTTTGTACTGTATTGGGATTGGAGGAAGGCAAGGAATGTGTCATTGTTGGAACCCTCTACAAGCACATGAAACTTAAACCTACCATTCTGGATGAGTATTCAAAGGAGAGATCTGCCACCCCACTCGTTCAGCCACATAACTTTATGCACCCAGATGATCACCTAGTTTTGGAAGATGAAAGTGGGAGAGTCAAGCTTTCCGGGGCTGTGCTTATACCTTCTGTGTATGTTACAGGGATTGTTGTTGCATTGCATGGAAAGGAAACTTGCGTTGGTGACTTTTTGGTTTTGGACATCCTAGAAGCTGGATTGCCACCCCAGATAGAGCGGCCACTCATATCAAGTGAAGATAAGTACGTGGTTTTTGTGTCGGGCTTAAGTATTGGGAGCAGCATCTCTAATCCTCTACAGTTTCAGCTCCTTATTGATCATATAACAGGACATTTAGGGGATGAGAAGGAACAAGGGATTGCAGCTCAAATAGTTCATGTTGTCATTTGTGGGAATTCGGTTGAAATTCCCCGTGCACTTTTAAATGGGCAGCATTTGTCTGCAAAGGACCAAACGAAGCTGACAGAACCGCTTAAAGAGCTAGATATCCTATTGAATCAGCTTGCTGCAGGTTTACCTGTGGACATCATGCCAGGTTCCAGTGACCCAGCCAATTTTTCCTTACCTCAGCAGCCTTTGCACAGATGCCTTTTTCCTGGATCATCAGCTTATAACACTTTCAGATCTTGCACTAATCCTCATTGTTTTGAGCTTGATAATTTCAGGTTTCTTGGAACATCAGGTCAGAACATAGATGATCTTGAGAAGTATTCAGAGGCTAAAGATAAGCTTGAATTTCTGGAGAGGACATTGAGCTGGAGGCATCTGGCTCCAACTGCTCCAAATACTCTTGGTTGCTATCCTTTCACTGATCGAGATCCTTTCCTGATTGAGAGCTGTCCTCATGTTTATTTTATTGGCAATCAGGACAAGTTCGATACTCGCTTAATAAAGGGATCTGAAGGGCAGATGGTTAGACTCATTTCGATTCCAAGATTTTGTGAGAAGGGAGTTGCCGTAATGGTAATATTTTTTTTATTTCAAGTCTTCAATTCACCTTTACCCAATATTTATACCTTTGCATCTCATCTCCCTAGTCATTACTACTGA 1347 42.69 MEIDSQKNLQRKQCTYQISDEQYKVQKETYRGQQYSHIYFARLHLMRTILHSLVSKWKPHLPVCTVLGLEEGKECVIVGTLYKHMKLKPTILDEYSKERSATPLVQPHNFMHPDDHLVLEDESGRVKLSGAVLIPSVYVTGIVVALHGKETCVGDFLVLDILEAGLPPQIERPLISSEDKYVVFVSGLSIGSSISNPLQFQLLIDHITGHLGDEKEQGIAAQIVHVVICGNSVEIPRALLNGQHLSAKDQTKLTEPLKELDILLNQLAAGLPVDIMPGSSDPANFSLPQQPLHRCLFPGSSAYNTFRSCTNPHCFELDNFRFLGTSGQNIDDLEKYSEAKDKLEFLERTLSWRHLAPTAPNTLGCYPFTDRDPFLIESCPHVYFIGNQDKFDTRLIKGSEGQMVRLISIPRFCEKGVAVMVIFFLFQVFNSPLPNIYTFASHLPSHYY 448
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 6889769 6901249 - Maker00033040 Lcy5g0600 632415
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy5g0600 448 CDD MPP_PolD2_C 181 421 IPR041863 -
Lcy5g0600 448 PANTHER DNA POLYMERASE DELTA SUBUNIT 2 5 421 IPR024826 GO:0006271(PANTHER)|GO:0042575(PANTHER)|GO:0043625(PANTHER)
Lcy5g0600 448 FunFam DNA polymerase delta small subunit 169 429 - -
Lcy5g0600 448 Gene3D - 169 428 - -
Lcy5g0600 448 Pfam DNA polymerase alpha/epsilon subunit B 182 393 IPR007185 GO:0003677(InterPro)|GO:0006260(InterPro)
Lcy5g0600 448 Gene3D - 40 164 - -
Lcy5g0600 448 FunFam DNA polymerase delta subunit 2 40 164 - -
Lcy5g0600 448 Pfam DNA polymerase delta subunit OB-fold domain 34 161 IPR040663 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy5g0600 K02328 - csv:101221438 809.675