Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy5g0631 ATGCTCCAACAGCGTCTGTTTACGTATCTTAGCGTCGTTTTCTATTCGATGATTCTCACTTCTCTGGCTCGGGCGTTCACTAATCCGCCGGATGTTGCAGCTCTTCAGGATCTGTACAGTGCTTTGAACTACCCACCAGAGCTTATAGGATGGAGAAAAGAAGGTGGAGATCCTTGTGTGGAAACATGGACCGGAGTGTCTTGCTCCGGTGCTGCTTTGACTATTGTCTGCTTCTGCAGTAAACTCCACGGGCTAAACCTCACTGGGAATCTTGGAGGGCAGCTCAACAGCCTCAACAATTTGAAGCAACTGGATGTTAGCTCAAATAGACTTACGGGTGAAATTCCCCAAAACTTGCCTCCTAATGCGACTCATATAAATCTGAGCCATAATACTCTATCTGGTGTGATTGGAAATGTGTTCACCGGTTTACAGAATTTGAGAGAGATGAGATTTGCCAAGTTCATTCGGTTCCCTGACGAACATCACTGGACTACTAGGTTCTTGCAGAACAACAAATTTACTGGATCAGTTGCCTACTTGTCTCACCTTCCACTAATTGACTTGAACATCCAAGACAATTCTTTTAGTGGCATTATTCCAGAGAATTTTAGAACTATTCCAAATTTGTGGATTGGGGGAAATAGGTTCCGTGCCGAAGTCAATTCTCCACCCTGGGATTTCCCCCTGGAAAAAGCACCTGTGGTGCAAAACATCAGTGGTCCTCCAACAACCAAGTCAAATGCCATCCAGAATTATCCCTCTCGTGGTGTAGTCAGGCATGAGAAGAACAGGCTTGGTCCTGGTGGAGTAGTTCTCCTGGTTGGCGGGTTAACACTAGTTGTAACCTTTGCAGCTCTTTTTGTCGTATTTGCCATGAAGAAAGTGCATGAAAAGAAAATAAATTTGAAGATTAGCAATATGTTACACCGTTCTCTTCCTCTGGGAAAAGCTGAAGATGGTTCGTCTACTGCACCCGAAGAAAGCTCGCAAAGCTTGCCCCTGAGTTCTCTACTCATGGGTGGTCCAAGGCCTATACCTTTATTAAATCACACGAGAACGGAAAAAGTTTCTGGGAAAAAAGGTTTCTCAAAGAGATGCAGGCTCCCAGTGAGAACAAAAATGTACACTTTGGCAGAGCTTCAATCCTCTACAAACAACTTTAGCCAAGAAAATCTTCTTGGAGAGGGATCGCTTGGTGCTGTTTATAGAGCTGAATTTCCTGATGGCCAAGTTTTGGCTGTGAAAAACATCAACACGGGGGCACTCTCTTTTACAGAAGAAGAGCAATTTCTGGATGTGGTATGGACTGCTTCCCGTTTGAGGCACCCAAACATAGTTACGCTGCTTGGGTATTGTGTAGAGCATGGACAACATTTACTCGGATATGAATATGTTCGAAATCTGTCTCTTGATGGCGCTTTACACTGTGAAGCATACATGCCTCTGTCATGGACTGTCCGTCTCCAGATTGCTCTTGGAGTTGCTAGGGCTTTAGATTATTTGCACACAAGTTTTTTCCCTCCATTTGCTCACTGCAATCTGAAGGCTGCCAACATCTTACTTGATGAAGAACTGATGCCTCGTATTTGTGATTGTGGGCTGTCTGTTTTGAGGCCACTTGTCACCAATAGAGTTAAAACGAAGGCTTCTGAGATTGTCAGTGGCGACAGAGGCTACCTTGCACCTGAACATGGCCAGCCAGGATTTGATAATACCAGAAGTGACGTGTATTCTTTTGGAGTGTTGCTTTTGGAGCTTGTCACAGGAAGAAAACCATTTGACAATTCGAAACCCAGGAAAGAGCAATCGCTGGTGAAATGGGCTTCATCTCGGCTTCACGACAACTTGAGTTTAGAACAGATGGTTGATCCAGGCATTAAAGGAACATTTTCCTCGAAGGCCCTCTCTCGCTTTGTCGATATTATCTCCCTTTGTATACAGCCTGCGAAGGAATTCCGACCACCAATGTCTGAAATAGTGGAACACCTAACAAATCTTCAGAGAAAGATGGAGATGGCGAAACGTGCTGCAGCAGAAGGAACTGAAATGGATCCTTTTGAGAAATCTTTTCGTTCAACCAACACTGGTTTCGTAAGTTCACCAACATACAGCTATTCTTCCACCTCAGTTTAG 2136 44.48 MLQQRLFTYLSVVFYSMILTSLARAFTNPPDVAALQDLYSALNYPPELIGWRKEGGDPCVETWTGVSCSGAALTIVCFCSKLHGLNLTGNLGGQLNSLNNLKQLDVSSNRLTGEIPQNLPPNATHINLSHNTLSGVIGNVFTGLQNLREMRFAKFIRFPDEHHWTTRFLQNNKFTGSVAYLSHLPLIDLNIQDNSFSGIIPENFRTIPNLWIGGNRFRAEVNSPPWDFPLEKAPVVQNISGPPTTKSNAIQNYPSRGVVRHEKNRLGPGGVVLLVGGLTLVVTFAALFVVFAMKKVHEKKINLKISNMLHRSLPLGKAEDGSSTAPEESSQSLPLSSLLMGGPRPIPLLNHTRTEKVSGKKGFSKRCRLPVRTKMYTLAELQSSTNNFSQENLLGEGSLGAVYRAEFPDGQVLAVKNINTGALSFTEEEQFLDVVWTASRLRHPNIVTLLGYCVEHGQHLLGYEYVRNLSLDGALHCEAYMPLSWTVRLQIALGVARALDYLHTSFFPPFAHCNLKAANILLDEELMPRICDCGLSVLRPLVTNRVKTKASEIVSGDRGYLAPEHGQPGFDNTRSDVYSFGVLLLELVTGRKPFDNSKPRKEQSLVKWASSRLHDNLSLEQMVDPGIKGTFSSKALSRFVDIISLCIQPAKEFRPPMSEIVEHLTNLQRKMEMAKRAAAEGTEMDPFEKSFRSTNTGFVSSPTYSYSSTSV 711
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 7729724 7735127 + Maker00011179 Lcy5g0631 632446

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lcy5g0631 711 Gene3D Phosphorylase Kinase; domain 1 350 465 - -
Lcy5g0631 711 Gene3D Transferase(Phosphotransferase) domain 1 467 689 - -
Lcy5g0631 711 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 30 668 IPR046959 -
Lcy5g0631 711 FunFam Leucine-rich repeat receptor-like protein kinase 466 675 - -
Lcy5g0631 711 MobiDBLite consensus disorder prediction 316 336 - -
Lcy5g0631 711 Coils Coil 657 684 - -
Lcy5g0631 711 Gene3D Ribonuclease Inhibitor 28 240 IPR032675 -
Lcy5g0631 711 Pfam Protein kinase domain 389 663 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy5g0631 711 ProSiteProfiles Protein kinase domain profile. 388 666 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy5g0631 711 Pfam Leucine rich repeat N-terminal domain 29 69 IPR013210 -
Lcy5g0631 711 SUPERFAMILY Protein kinase-like (PK-like) 366 665 IPR011009 -
Lcy5g0631 711 Pfam Leucine Rich Repeat 100 119 IPR001611 GO:0005515(InterPro)
Lcy5g0631 711 Pfam Leucine Rich Repeat 186 205 IPR001611 GO:0005515(InterPro)
Lcy5g0631 711 SUPERFAMILY L domain-like 27 211 - -
Lcy5g0631 711 FunFam protein STRUBBELIG-RECEPTOR FAMILY 3 28 156 - -
Lcy5g0631 711 FunFam Protein STRUBBELIG-RECEPTOR FAMILY 8 353 465 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy5g0631 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy5g0631 Lcy-Chr5:7729724 Lcy5g1479 Lcy-Chr5:35449049 2.89E-132 dispersed
Lcy5g0631 Lcy-Chr5:7729724 Lcy5g0632 Lcy-Chr5:7753399 5.74E-160 tandem
Lcy5g0314 Lcy-Chr5:2993754 Lcy5g0631 Lcy-Chr5:7729724 1.53E-59 transposed
Lcy12g0901 Lcy-Chr12:13013602 Lcy5g0631 Lcy-Chr5:7729724 1.65E-52 wgd
Lcy5g0631 Lcy-Chr5:7729724 Lcy9g0711 Lcy-Chr9:24217776 2.60E-63 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lcy4g0624 . 2 672 Strubbelig Receptor Gene Family AT4G03390 56.6 2.3e-184 643.3
Lcy3g2287 . 431 734 Strubbelig Receptor Gene Family AT4G03390 57.4 1.6e-92 338.2
Lcy5g0631 . 9 708 Strubbelig Receptor Gene Family AT5G06820 51.8 2.5e-196 682.9
Lcy10g0819 . 10 696 Strubbelig Receptor Gene Family AT1G78980 59.2 1.0e-186 651.0
Lcy13g0086 . 156 838 Strubbelig Receptor Gene Family AT1G78980 51.5 2.2e-149 526.9
Lcy3g2287 . 81 737 Strubbelig Receptor Gene Family AT1G78980 51.7 4.2e-124 443.0
Lcy10g0819 . 4 673 Strubbelig Receptor Gene Family AT3G13065 51.3 4.3e-142 502.7
Lcy3g2287 . 81 732 Strubbelig Receptor Gene Family AT3G13065 50.8 1.8e-100 364.4
Lcy5g1479 . 446 739 Strubbelig Receptor Gene Family AT1G11130 53.4 6.4e-85 312.8
Lcy5g0631 . 9 708 Strubbelig Receptor Gene Family AT5G06820 51.8 2.5e-196 682.9
Lcy4g0624 . 2 672 Strubbelig Receptor Gene Family AT4G03390 56.6 2.3e-184 643.3
Lcy3g2287 . 431 734 Strubbelig Receptor Gene Family AT4G03390 57.4 1.6e-92 338.2
Lcy10g0819 . 4 673 Strubbelig Receptor Gene Family AT3G13065 51.3 4.3e-142 502.7
Lcy3g2287 . 81 732 Strubbelig Receptor Gene Family AT3G13065 50.8 1.8e-100 364.4
Lcy10g0819 . 10 696 Strubbelig Receptor Gene Family AT1G78980 59.2 1.0e-186 651.0
Lcy13g0086 . 156 838 Strubbelig Receptor Gene Family AT1G78980 51.5 2.2e-149 526.9
Lcy3g2287 . 81 737 Strubbelig Receptor Gene Family AT1G78980 51.7 4.2e-124 443.0
Lcy13g0086 . 149 831 Strubbelig Receptor Gene Family AT1G53730 60.9 1.7e-205 713.4
Lcy3g2287 . 60 745 Strubbelig Receptor Gene Family AT1G53730 60.9 6.1e-179 625.2
Lcy10g0819 . 5 681 Strubbelig Receptor Gene Family AT1G53730 50.7 5.5e-156 548.9
Lcy13g0086 . 157 835 Strubbelig Receptor Gene Family AT3G14350 52.3 3.8e-178 622.5
Lcy3g2287 . 80 743 Strubbelig Receptor Gene Family AT3G14350 56.8 5.7e-158 555.4
Lcy5g1479 . 394 770 Strubbelig Receptor Gene Family AT4G22130 82.0 1.4e-175 613.6
Lcy13g0086 . 519 847 Strubbelig Receptor Gene Family AT4G22130 63.7 2.9e-120 429.9
Lcy3g2287 . 438 751 Strubbelig Receptor Gene Family AT4G22130 65.8 2.1e-118 423.7
Lcy4g0624 . 369 664 Strubbelig Receptor Gene Family AT4G22130 62.0 2.4e-106 383.6
Lcy10g0819 . 350 695 Strubbelig Receptor Gene Family AT4G22130 53.1 7.5e-100 362.1
Lcy5g0631 . 360 682 Strubbelig Receptor Gene Family AT4G22130 52.9 6.1e-94 342.4
Lcy1g0371 . 418 685 Strubbelig Receptor Gene Family AT4G22130 59.3 1.7e-88 324.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003013 1 3 1 1 1 1 2 1 1 2 1 0 3 2 1 2 1 1 3 1 2 2 2 1 2 2 2 1 0 1 44
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
65927 None None None None Lcy PK