Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy5g0631 ATGCTCCAACAGCGTCTGTTTACGTATCTTAGCGTCGTTTTCTATTCGATGATTCTCACTTCTCTGGCTCGGGCGTTCACTAATCCGCCGGATGTTGCAGCTCTTCAGGATCTGTACAGTGCTTTGAACTACCCACCAGAGCTTATAGGATGGAGAAAAGAAGGTGGAGATCCTTGTGTGGAAACATGGACCGGAGTGTCTTGCTCCGGTGCTGCTTTGACTATTGTCTGCTTCTGCAGTAAACTCCACGGGCTAAACCTCACTGGGAATCTTGGAGGGCAGCTCAACAGCCTCAACAATTTGAAGCAACTGGATGTTAGCTCAAATAGACTTACGGGTGAAATTCCCCAAAACTTGCCTCCTAATGCGACTCATATAAATCTGAGCCATAATACTCTATCTGGTGTGATTGGAAATGTGTTCACCGGTTTACAGAATTTGAGAGAGATGAGATTTGCCAAGTTCATTCGGTTCCCTGACGAACATCACTGGACTACTAGGTTCTTGCAGAACAACAAATTTACTGGATCAGTTGCCTACTTGTCTCACCTTCCACTAATTGACTTGAACATCCAAGACAATTCTTTTAGTGGCATTATTCCAGAGAATTTTAGAACTATTCCAAATTTGTGGATTGGGGGAAATAGGTTCCGTGCCGAAGTCAATTCTCCACCCTGGGATTTCCCCCTGGAAAAAGCACCTGTGGTGCAAAACATCAGTGGTCCTCCAACAACCAAGTCAAATGCCATCCAGAATTATCCCTCTCGTGGTGTAGTCAGGCATGAGAAGAACAGGCTTGGTCCTGGTGGAGTAGTTCTCCTGGTTGGCGGGTTAACACTAGTTGTAACCTTTGCAGCTCTTTTTGTCGTATTTGCCATGAAGAAAGTGCATGAAAAGAAAATAAATTTGAAGATTAGCAATATGTTACACCGTTCTCTTCCTCTGGGAAAAGCTGAAGATGGTTCGTCTACTGCACCCGAAGAAAGCTCGCAAAGCTTGCCCCTGAGTTCTCTACTCATGGGTGGTCCAAGGCCTATACCTTTATTAAATCACACGAGAACGGAAAAAGTTTCTGGGAAAAAAGGTTTCTCAAAGAGATGCAGGCTCCCAGTGAGAACAAAAATGTACACTTTGGCAGAGCTTCAATCCTCTACAAACAACTTTAGCCAAGAAAATCTTCTTGGAGAGGGATCGCTTGGTGCTGTTTATAGAGCTGAATTTCCTGATGGCCAAGTTTTGGCTGTGAAAAACATCAACACGGGGGCACTCTCTTTTACAGAAGAAGAGCAATTTCTGGATGTGGTATGGACTGCTTCCCGTTTGAGGCACCCAAACATAGTTACGCTGCTTGGGTATTGTGTAGAGCATGGACAACATTTACTCGGATATGAATATGTTCGAAATCTGTCTCTTGATGGCGCTTTACACTGTGAAGCATACATGCCTCTGTCATGGACTGTCCGTCTCCAGATTGCTCTTGGAGTTGCTAGGGCTTTAGATTATTTGCACACAAGTTTTTTCCCTCCATTTGCTCACTGCAATCTGAAGGCTGCCAACATCTTACTTGATGAAGAACTGATGCCTCGTATTTGTGATTGTGGGCTGTCTGTTTTGAGGCCACTTGTCACCAATAGAGTTAAAACGAAGGCTTCTGAGATTGTCAGTGGCGACAGAGGCTACCTTGCACCTGAACATGGCCAGCCAGGATTTGATAATACCAGAAGTGACGTGTATTCTTTTGGAGTGTTGCTTTTGGAGCTTGTCACAGGAAGAAAACCATTTGACAATTCGAAACCCAGGAAAGAGCAATCGCTGGTGAAATGGGCTTCATCTCGGCTTCACGACAACTTGAGTTTAGAACAGATGGTTGATCCAGGCATTAAAGGAACATTTTCCTCGAAGGCCCTCTCTCGCTTTGTCGATATTATCTCCCTTTGTATACAGCCTGCGAAGGAATTCCGACCACCAATGTCTGAAATAGTGGAACACCTAACAAATCTTCAGAGAAAGATGGAGATGGCGAAACGTGCTGCAGCAGAAGGAACTGAAATGGATCCTTTTGAGAAATCTTTTCGTTCAACCAACACTGGTTTCGTAAGTTCACCAACATACAGCTATTCTTCCACCTCAGTTTAG 2136 44.48 MLQQRLFTYLSVVFYSMILTSLARAFTNPPDVAALQDLYSALNYPPELIGWRKEGGDPCVETWTGVSCSGAALTIVCFCSKLHGLNLTGNLGGQLNSLNNLKQLDVSSNRLTGEIPQNLPPNATHINLSHNTLSGVIGNVFTGLQNLREMRFAKFIRFPDEHHWTTRFLQNNKFTGSVAYLSHLPLIDLNIQDNSFSGIIPENFRTIPNLWIGGNRFRAEVNSPPWDFPLEKAPVVQNISGPPTTKSNAIQNYPSRGVVRHEKNRLGPGGVVLLVGGLTLVVTFAALFVVFAMKKVHEKKINLKISNMLHRSLPLGKAEDGSSTAPEESSQSLPLSSLLMGGPRPIPLLNHTRTEKVSGKKGFSKRCRLPVRTKMYTLAELQSSTNNFSQENLLGEGSLGAVYRAEFPDGQVLAVKNINTGALSFTEEEQFLDVVWTASRLRHPNIVTLLGYCVEHGQHLLGYEYVRNLSLDGALHCEAYMPLSWTVRLQIALGVARALDYLHTSFFPPFAHCNLKAANILLDEELMPRICDCGLSVLRPLVTNRVKTKASEIVSGDRGYLAPEHGQPGFDNTRSDVYSFGVLLLELVTGRKPFDNSKPRKEQSLVKWASSRLHDNLSLEQMVDPGIKGTFSSKALSRFVDIISLCIQPAKEFRPPMSEIVEHLTNLQRKMEMAKRAAAEGTEMDPFEKSFRSTNTGFVSSPTYSYSSTSV 711
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 7729724 7735127 + Maker00011179 Lcy5g0631 632446
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy5g0631 711 Gene3D Phosphorylase Kinase; domain 1 350 465 - -
Lcy5g0631 711 Gene3D Transferase(Phosphotransferase) domain 1 467 689 - -
Lcy5g0631 711 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 30 668 IPR046959 -
Lcy5g0631 711 FunFam Leucine-rich repeat receptor-like protein kinase 466 675 - -
Lcy5g0631 711 MobiDBLite consensus disorder prediction 316 336 - -
Lcy5g0631 711 Coils Coil 657 684 - -
Lcy5g0631 711 Gene3D Ribonuclease Inhibitor 28 240 IPR032675 -
Lcy5g0631 711 Pfam Protein kinase domain 389 663 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy5g0631 711 ProSiteProfiles Protein kinase domain profile. 388 666 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy5g0631 711 Pfam Leucine rich repeat N-terminal domain 29 69 IPR013210 -
Lcy5g0631 711 SUPERFAMILY Protein kinase-like (PK-like) 366 665 IPR011009 -
Lcy5g0631 711 Pfam Leucine Rich Repeat 100 119 IPR001611 GO:0005515(InterPro)
Lcy5g0631 711 Pfam Leucine Rich Repeat 186 205 IPR001611 GO:0005515(InterPro)
Lcy5g0631 711 SUPERFAMILY L domain-like 27 211 - -
Lcy5g0631 711 FunFam protein STRUBBELIG-RECEPTOR FAMILY 3 28 156 - -
Lcy5g0631 711 FunFam Protein STRUBBELIG-RECEPTOR FAMILY 8 353 465 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy5g0631 Lcy-Chr5:7729724 Lcy5g1479 Lcy-Chr5:35449049 2.89E-132 dispersed
Lcy5g0631 Lcy-Chr5:7729724 Lcy5g0632 Lcy-Chr5:7753399 5.74E-160 tandem
Lcy5g0314 Lcy-Chr5:2993754 Lcy5g0631 Lcy-Chr5:7729724 1.53E-59 transposed
Lcy12g0901 Lcy-Chr12:13013602 Lcy5g0631 Lcy-Chr5:7729724 1.65E-52 wgd
Lcy5g0631 Lcy-Chr5:7729724 Lcy9g0711 Lcy-Chr9:24217776 2.60E-63 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
65927 None None None None Lcy PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy5g0631 - - - 0.0