Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy5g0638 ATGGCTTCTTCCAATATTAAAAGCAGCTCGTCCATCAGCCAACAAGCAAACGATCAGCAAGAAAAAGAAAAACAACAACAACAACAACATCATCAACTTTTGCAAACTCCAAACTTTGTCATCTCCAAAAATTCCTCATTATTCAACTTCCAAAACAACAATTTTCATGACCATCATCATCATCATCATCATCAATTACCCTTCTCCATGAATCTCCCCTCCATCTCTCCAAATTTCATAAGCAAAGATGGAGGAGGTGATGATTTGGGGGAATTGGATCAAGCTCTTTTTCTTTATCTTGATGGACAAGAACCCTCAACAACTACTACTCAAGATCAAAGACAGAGCTCAGGGATGAGACCTCCGACGTTGAACATCTTCCCGTCGCAGCCGATGCACGTCGACCCGTCGCCAACAAAAGCAAACACAGCATTGATCAACCATGGTGATTCAAAGATCAAAGCATCAGAGCCGTCCAAAGAGTTGGCCAACCAACGCAGCTGTGGAGCCACTGCATCTGGACCAGCCCCAACTCCAACTACAACTACAACAACCGAACCTCATGCCAAACCTCCAAAACGTGAGCCTAACAAGAAAGGGCTGACCTCAAGCTCAGAGCAAGAAGGACCCAAAACTCCAGACCCCAAGGCTTATGTTCAGCAGTTGGAGTTGAGTAGGATTAAGCTCACGCAGCTGGAGCAAGAGCTACAAAGAGCAAGAACTCAGGGAATGTTTCTGGGTGGAGGAGCAGCCATTTTAGGAGCTGATCAAGGACTTCCTGCTGGCCTCCATAACCTCAGCTCTGACGCTGCGGTGTTCGACATCGAGTACGGTCGGTGGCAAGAGGAGCACCACCGGCTGATGTGCGAGCTCCGAGCAGCAGTGCAAGAGCACCTACCGGAGAACGAGCTGCGGCTGTTCGTCGACAATTGTTTAGCCCATTACGACGAGATTCTGAACTTGAAGATGATGGTGGCGAAGTCGGACGTCTTCCACCTTGTCTCCGGCATGTGGAAGACGCCGGCGGAGAGGTGCTTCATGTGGATGGGAGATTTTAGGCCATCTGAGCTCATTAAGATAATAATGGGTCAAGTAGAGCCATTAACAGAGCATCAAATATTGAACATTTGTGGATTGCAACAATCAACACAAGAGACTGAGGAGGCATTGTCTCAAGGGCTTGAGGCCCTTAACCAGTCCTTATCAGACACCATCACCTCTGATTCATTGAGTAGCCCTCCCAATATGGCTAACTACATGGGGCAGATGACCTTAGCCATCAACAAACTCTCTACCCTTGAAGGCTTTGTAAGACAGGCAGACAATTTGAGACATCAAACGCTTCATCGATTACATCAGATGTTGACGACCCGTCAAGCTGCCAGGTGTTTGCTAGCTATCGCAGAGTATTTTCATCGACTTCGAGCTCTTAGCTCCTTGTGGTTGGCTCGACCCAGGCAGGATTGA 1467 47.72 MASSNIKSSSSISQQANDQQEKEKQQQQQHHQLLQTPNFVISKNSSLFNFQNNNFHDHHHHHHHQLPFSMNLPSISPNFISKDGGGDDLGELDQALFLYLDGQEPSTTTTQDQRQSSGMRPPTLNIFPSQPMHVDPSPTKANTALINHGDSKIKASEPSKELANQRSCGATASGPAPTPTTTTTTEPHAKPPKREPNKKGLTSSSEQEGPKTPDPKAYVQQLELSRIKLTQLEQELQRARTQGMFLGGGAAILGADQGLPAGLHNLSSDAAVFDIEYGRWQEEHHRLMCELRAAVQEHLPENELRLFVDNCLAHYDEILNLKMMVAKSDVFHLVSGMWKTPAERCFMWMGDFRPSELIKIIMGQVEPLTEHQILNICGLQQSTQETEEALSQGLEALNQSLSDTITSDSLSSPPNMANYMGQMTLAINKLSTLEGFVRQADNLRHQTLHRLHQMLTTRQAARCLLAIAEYFHRLRALSSLWLARPRQD 488
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 7880978 7889518 + Maker00011214 Lcy5g0638 632453
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy5g0638 488 Pfam Seed dormancy control 288 362 IPR025422 GO:0006351(InterPro)|GO:0043565(InterPro)
Lcy5g0638 488 MobiDBLite consensus disorder prediction 1 31 - -
Lcy5g0638 488 MobiDBLite consensus disorder prediction 1 22 - -
Lcy5g0638 488 ProSiteProfiles DOG1 domain profile. 270 484 IPR025422 GO:0006351(InterPro)|GO:0043565(InterPro)
Lcy5g0638 488 PANTHER TRANSCRIPTION FACTOR TGA9 197 487 - -
Lcy5g0638 488 MobiDBLite consensus disorder prediction 102 215 - -
Lcy5g0638 488 MobiDBLite consensus disorder prediction 160 187 - -
Lcy5g0638 488 Coils Coil 219 242 - -
Lcy5g0638 488 MobiDBLite consensus disorder prediction 102 146 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy5g0638 Lcy-Chr5:7880978 Lcy8g1992 Lcy-Chr8:46218478 7.40E-94 dispersed
Lcy5g0638 Lcy-Chr5:7880978 Lcy5g1196 Lcy-Chr5:27254294 1.28E-96 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy5g0638 K14431 - csv:101204923 757.288