Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy5g0643 ATGGCAGGCACCGACACGACAGCGACGGCGGTGTTATGGGCGATGGGGGAGCTCTTGAATCGTCCCGAAGCAATCAAAAAGCTAAGAAAAGAGATCATTTCAGTGGTTGGAAACAAAAAGCTAGTCCAAGAATCGGACTTCCCCAAGCTCCCATATCTCCGAGCAGTGGTCAACGAAACCCTCCGCCTCCACCCGTCGGCGCCAATCATCATCAGAGAATGTTTAGATGACTGCAACATCAACGGTTCACTAGTCAAGGCAAAAACTCGAGTTTTGGTCAACGCTTACGCCGTCATGAGGGACCCAGAGTCCTGGTCTGAGCCCGACAAGTTCTTGCCGGAGAGGTTTCTGGAAGGGTCATCGGAGAACATTGGCAACCATCGGATGGAGATGAAGGGACAGAATTTTCGATACATTCCATTTGGGAGTGGGAAGAGAGGCTGCCCTGGTTCTTCTCTTGCCTTGTTGGTTTTTCCATGTGCAATTGCAGCCATGGTGCAGCGGTTTGATTGGAACATGGACGGCGATGGCGGCGTTGATTTAAAACCTGGGTCGGGATTTGCTGCAGAGATGGCGACACCGCTTGTCTGTTATGCAAACCCTATTCATGGGACTGATTAA 621 51.05 MAGTDTTATAVLWAMGELLNRPEAIKKLRKEIISVVGNKKLVQESDFPKLPYLRAVVNETLRLHPSAPIIIRECLDDCNINGSLVKAKTRVLVNAYAVMRDPESWSEPDKFLPERFLEGSSENIGNHRMEMKGQNFRYIPFGSGKRGCPGSSLALLVFPCAIAAMVQRFDWNMDGDGGVDLKPGSGFAAEMATPLVCYANPIHGTD 206
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 7937647 7938267 + Maker00011178 Lcy5g0643 632458
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy5g0643 206 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 141 150 IPR017972 GO:0005506(InterPro)|GO:0016705(InterPro)
Lcy5g0643 206 PANTHER FLAVONOID 3'-MONOOXYGENASE-RELATED 1 199 IPR051103 GO:0016020(PANTHER)|GO:0016709(PANTHER)
Lcy5g0643 206 Pfam Cytochrome P450 1 180 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lcy5g0643 206 PRINTS E-class P450 group I signature 138 148 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lcy5g0643 206 PRINTS E-class P450 group I signature 54 72 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lcy5g0643 206 PRINTS E-class P450 group I signature 94 118 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lcy5g0643 206 PRINTS E-class P450 group I signature 11 37 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lcy5g0643 206 PRINTS E-class P450 group I signature 148 171 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lcy5g0643 206 Gene3D Cytochrome P450 1 192 IPR036396 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lcy5g0643 206 PRINTS P450 superfamily signature 55 66 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lcy5g0643 206 PRINTS P450 superfamily signature 139 148 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lcy5g0643 206 PRINTS P450 superfamily signature 2 19 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lcy5g0643 206 PRINTS P450 superfamily signature 148 159 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lcy5g0643 206 SUPERFAMILY Cytochrome P450 1 199 IPR036396 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy5g0643 Lcy-Chr5:7937647 Lcy12g0465 Lcy-Chr12:5635826 2.37E-67 dispersed
Lcy5g0641 Lcy-Chr5:7917117 Lcy5g0643 Lcy-Chr5:7937647 1.28E-125 proximal
Lcy5g0643 Lcy-Chr5:7937647 Lcy5g0644 Lcy-Chr5:7941684 6.56E-60 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy5g0643 - - - 0.0