Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy5g0644 ATGGCTGATTTCTCAGACTACCTTCTTCTTCTCTCTTTCTTGCTAGCATCCTTCCTCTTCATCCAAGCTATCTGCACTCAAACCCGACCCGACAAGCCTCGCCTTCCACCGAGCCCACCGTCGTGGCCGGTGGTCGGCCACCTCCACCTCCTTGGTCGGATCCCTCACCAAGCCCTTCACAAATTGTCATGTCAATATGGACCATTAATACATCTCTTCTTTGGCTCTAAGCCTTGTGTTATTGTCTCCTCGCCAGAAATGGCTAAACATTTCCTCAAAACAAATGAATCCTCCTTTTTGAACCGACCCATTAGACTCAACATAAACTATCTAACTTATGGCTCTGCGGACTTCACTTTTGCACCCTATGGACCCTATTGGAAGTTCTTGAAAAAGCTTTGCATGACGGAGCTCCTCGGCGCCCGGACGCTCGACCTCCACCGCCCGGTGAGGGACGAGGAGATGAGGCTGTTCGTGCAGCGGATTCATGAACGAGCTGTCCTTGGGGTGGCAGTCGATGTTGGAGCTGAGCTTTCGAGGTTGATGAATAACATAATATCGAGGATGACGTTGAGGAGGAGGTGCTCGGAGGAGGAAGGTGGAGCGGAAGAGGTGGGGAAGCTGGTGGGGGAGATGTGCGAGCTCGCTGGAGAACTTAACGTCGCCGACATGATTTGGTTCTGCAAGAGGTTGGATTTACAAGGGTTTGGAAGAAAAGTTAGAGATGTGAGGAAGAGGTATGATGCTATGATGGAGAAGATAATAAAGGAACATGAAGAAGAGAGGAAGAGGAAGAAGGAAGATGGTGAAGATGATGGAGTTAAGGATTTGCTTGATATTCTACTTGACATTTATGAAGATGAAAGCTCACAAATCAAACTCACAAGAGAGAATATCAAGGCTTTTGTTATGAACATATTCGGCGCCGGAACTGAAACATCAGCGGCGGCGACAGAGTGGGCATTAGCAGAGCTAATCAACAACCCGTCCGCCATGGCCAAAGCAACTCAAGAACTCGACTCCGTCATCGGAAAAACCCGCCTCCTTCACGAATCCGATCTCCCCAACCTCCCCTATCTCCAATCCGTCGTCAAAGAAACCCTCCGCCTCCACCCGACGGCGCCGCTCATCGTCCGTGAGGCCACCGAGCCCTGCACCGTCGCCGGCTACCACATTCCAGCCAGCACCCGCCTCCTCGTCAACGTCTGGGCCATCGCCCGCGACCCGGCCCACTGGCCCGACCCGCTCCAGTTCCGGCCGGAGAGATTCTTGAGCCGCCCTGGTTCCGATCTGCAGAGCTTTGATCTCATGCCGTTTGGGAGCGGCCGCCGGAGCTGCCCGGGCGCCGCCATGGCTCTGCTGGCGGTGCCGGCAGTGCTCGGGAGGTTGATTCAATGCTTTGAGTGGAAGGTTGACGGCGGCGGTGGCGGTGTTGATATGGAAGAGGGGCCTGGAATTTCTCTCCGGCGAGCTCGTCCTTTGGTTTTAGTTCCTGTGCGTAGGCTCCATCCTTTTCCTTGTATTTAG 1527 53.57 MADFSDYLLLLSFLLASFLFIQAICTQTRPDKPRLPPSPPSWPVVGHLHLLGRIPHQALHKLSCQYGPLIHLFFGSKPCVIVSSPEMAKHFLKTNESSFLNRPIRLNINYLTYGSADFTFAPYGPYWKFLKKLCMTELLGARTLDLHRPVRDEEMRLFVQRIHERAVLGVAVDVGAELSRLMNNIISRMTLRRRCSEEEGGAEEVGKLVGEMCELAGELNVADMIWFCKRLDLQGFGRKVRDVRKRYDAMMEKIIKEHEEERKRKKEDGEDDGVKDLLDILLDIYEDESSQIKLTRENIKAFVMNIFGAGTETSAAATEWALAELINNPSAMAKATQELDSVIGKTRLLHESDLPNLPYLQSVVKETLRLHPTAPLIVREATEPCTVAGYHIPASTRLLVNVWAIARDPAHWPDPLQFRPERFLSRPGSDLQSFDLMPFGSGRRSCPGAAMALLAVPAVLGRLIQCFEWKVDGGGGGVDMEEGPGISLRRARPLVLVPVRRLHPFPCI 508
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
5 7941684 7946755 + Maker00011174 Lcy5g0644 632459
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Lcy5g0644 508 Gene3D Cytochrome P450 21 497 IPR036396 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lcy5g0644 508 FunFam Cytochrome P450 family protein 27 496 - -
Lcy5g0644 508 SUPERFAMILY Cytochrome P450 36 501 IPR036396 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lcy5g0644 508 PANTHER FLAVONOID 3'-MONOOXYGENASE-RELATED 13 501 IPR051103 GO:0016020(PANTHER)|GO:0016709(PANTHER)
Lcy5g0644 508 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 439 448 IPR017972 GO:0005506(InterPro)|GO:0016705(InterPro)
Lcy5g0644 508 Pfam Cytochrome P450 36 492 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lcy5g0644 508 PRINTS E-class P450 group I signature 63 82 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lcy5g0644 508 PRINTS E-class P450 group I signature 181 199 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lcy5g0644 508 PRINTS E-class P450 group I signature 298 315 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lcy5g0644 508 PRINTS E-class P450 group I signature 361 379 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lcy5g0644 508 PRINTS E-class P450 group I signature 446 469 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lcy5g0644 508 PRINTS E-class P450 group I signature 318 344 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lcy5g0644 508 PRINTS E-class P450 group I signature 401 425 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lcy5g0644 508 PRINTS E-class P450 group I signature 436 446 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lcy5g0644 508 PRINTS P450 superfamily signature 309 326 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lcy5g0644 508 PRINTS P450 superfamily signature 446 457 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lcy5g0644 508 PRINTS P450 superfamily signature 362 373 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lcy5g0644 508 PRINTS P450 superfamily signature 437 446 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy1g2633 Lcy-Chr1:49458061 Lcy5g0644 Lcy-Chr5:7941684 1.96E-121 dispersed
Lcy5g0644 Lcy-Chr5:7941684 Lcy6g1734 Lcy-Chr6:34142993 3.73E-209 dispersed
Lcy5g0642 Lcy-Chr5:7935482 Lcy5g0644 Lcy-Chr5:7941684 2.99E-64 proximal
Lcy5g0643 Lcy-Chr5:7937647 Lcy5g0644 Lcy-Chr5:7941684 6.56E-60 tandem
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy5g0644 K24188 - csv:101205411 770.0