Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lcy5g0651 | ATGGAGATTAAAGTGGGGACTGTGGGTGGATCCAGTCCCATCGGGCGTCAATCGGATGATACTGGGCTTGAATCGCTTCAATTCTGCGAGGAAATTCAGGGGTTGATGACGATTCCGGCGGAAAATGCTAGCTCCTTCACTGCACTTCTGGAACTTCCGGCGACGCAGGCTTTAGAGCTCCTCCACTCGCCGGATTCCGACGGTGGCGCCGCGGCGGCGGTTGTGAACGATGATTCCGTTCACCACCGTATCAAAGATGTGCCGAAACCCTACTTCAGTGCCTTCAATTGCAATTTGACCTTCCCGACGAACTCGGCTCTTATCGAACGCGCCGCCAAGTTCTCGGTCTTGGCCGAAGAGCATTCGCCGGAGACGACGAGTACAGTGCCATTGAATTCGAGCGTCAATTTGGAGAAAGTGAAGAACGAGCCCACCACTGAAACCGATTCGAACCCTAATCACTTGCAGACTTTAATCTCCGATCCGATGGTGGAGAACAACACGAACCAGAGATCGGCGAAGAGGAAGGAGCGAGAGAAAAAGGGAAAAGGGTCATCAAAGAAGAGCAAGAACGAAAGCAACGAAGATGCTGAAAAACTTCCTTACGTTCATGTCCGAGCTCGCCGTGGTCAAGCGACAGACAGCCATAGCCTAGCAGAGCGAGCGAGGAGAGAGAAAATCAATGCTCGGATGAAGCTACTTCAAGAATTGGTCCCTGGATGCAATAAGATCTCAGGTACAGCTCTAGTGTTGGATGAAATCATCAACCATGTACAATCACTGCAGCGTCAAGTGGAGTTCTTGTCAATGAGGCTTGCAGCAGTTAACCCCAGAGTTGATTTCAACATTGATAGCATATTGGCTGGAGAAAACGAACCTGTACTCGAAAGCAACTTTCCGACCATGGTTACGCCATTGATGTGGCCAGAAATCCCGCTCAGTGGAAACAGACAACAATATCAACCGCAATGGCATTTCGATGCAGCAGTTAACCAGCAAGCCTGGGCGAGGGATGAACATAATCATCATAATTTCAGCACTCCTGAAAACTCTCTTTTAAGTTATGACTCTTCAGCAAATTCAGGTATAGTTATCTCACTAGCTTTTTTTGTTTTGCTTTGCTTTGTTTTCATCTCTGCACTCAAATCAATTGAAGATGGAGCTGTGAAGGCAAAACATTATATTTTACTTGTAGCTACTAGTGTATATAGCCAAATATATAATAGTAATAGCAGTTAG | 1239 | 47.13 | MEIKVGTVGGSSPIGRQSDDTGLESLQFCEEIQGLMTIPAENASSFTALLELPATQALELLHSPDSDGGAAAAVVNDDSVHHRIKDVPKPYFSAFNCNLTFPTNSALIERAAKFSVLAEEHSPETTSTVPLNSSVNLEKVKNEPTTETDSNPNHLQTLISDPMVENNTNQRSAKRKEREKKGKGSSKKSKNESNEDAEKLPYVHVRARRGQATDSHSLAERARREKINARMKLLQELVPGCNKISGTALVLDEIINHVQSLQRQVEFLSMRLAAVNPRVDFNIDSILAGENEPVLESNFPTMVTPLMWPEIPLSGNRQQYQPQWHFDAAVNQQAWARDEHNHHNFSTPENSLLSYDSSANSGIVISLAFFVLLCFVFISALKSIEDGAVKAKHYILLVATSVYSQIYNSNSS | 412 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
5 | 8040838 | 8046161 | + | Maker00011173 | Lcy5g0651 | 632466 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lcy5g0651 | 412 | Coils | Coil | 251 | 271 | - | - | |
Lcy5g0651 | 412 | Gene3D | - | 208 | 281 | IPR036638 | GO:0046983(InterPro) | |
Lcy5g0651 | 412 | MobiDBLite | consensus disorder prediction | 184 | 220 | - | - | |
Lcy5g0651 | 412 | MobiDBLite | consensus disorder prediction | 120 | 220 | - | - | |
Lcy5g0651 | 412 | PANTHER | STEROL REGULATORY ELEMENT-BINDING PROTEIN | 108 | 327 | IPR024097 | GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(InterPro) | |
Lcy5g0651 | 412 | CDD | bHLH_AtBPE_like | 201 | 286 | - | - | |
Lcy5g0651 | 412 | SUPERFAMILY | HLH, helix-loop-helix DNA-binding domain | 209 | 280 | IPR036638 | GO:0046983(InterPro) | |
Lcy5g0651 | 412 | SMART | finulus | 217 | 267 | IPR011598 | GO:0046983(InterPro) | |
Lcy5g0651 | 412 | MobiDBLite | consensus disorder prediction | 120 | 169 | - | - | |
Lcy5g0651 | 412 | FunFam | transcription factor bHLH48-like isoform X1 | 208 | 280 | - | - | |
Lcy5g0651 | 412 | ProSiteProfiles | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 211 | 261 | IPR011598 | GO:0046983(InterPro) | |
Lcy5g0651 | 412 | Pfam | Helix-loop-helix DNA-binding domain | 215 | 262 | IPR011598 | GO:0046983(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lcy5g0651 | Lcy-Chr5:8040838 | Lcy7g0378 | Lcy-Chr7:3190844 | 2.57E-37 | dispersed | |
Lcy5g0651 | Lcy-Chr5:8040838 | Lcy3g1006 | Lcy-Chr3:33992068 | 1.68E-39 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
20085 | None | None | None | None | Lcy | TF |
Pathway information
