Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy5g0651 ATGGAGATTAAAGTGGGGACTGTGGGTGGATCCAGTCCCATCGGGCGTCAATCGGATGATACTGGGCTTGAATCGCTTCAATTCTGCGAGGAAATTCAGGGGTTGATGACGATTCCGGCGGAAAATGCTAGCTCCTTCACTGCACTTCTGGAACTTCCGGCGACGCAGGCTTTAGAGCTCCTCCACTCGCCGGATTCCGACGGTGGCGCCGCGGCGGCGGTTGTGAACGATGATTCCGTTCACCACCGTATCAAAGATGTGCCGAAACCCTACTTCAGTGCCTTCAATTGCAATTTGACCTTCCCGACGAACTCGGCTCTTATCGAACGCGCCGCCAAGTTCTCGGTCTTGGCCGAAGAGCATTCGCCGGAGACGACGAGTACAGTGCCATTGAATTCGAGCGTCAATTTGGAGAAAGTGAAGAACGAGCCCACCACTGAAACCGATTCGAACCCTAATCACTTGCAGACTTTAATCTCCGATCCGATGGTGGAGAACAACACGAACCAGAGATCGGCGAAGAGGAAGGAGCGAGAGAAAAAGGGAAAAGGGTCATCAAAGAAGAGCAAGAACGAAAGCAACGAAGATGCTGAAAAACTTCCTTACGTTCATGTCCGAGCTCGCCGTGGTCAAGCGACAGACAGCCATAGCCTAGCAGAGCGAGCGAGGAGAGAGAAAATCAATGCTCGGATGAAGCTACTTCAAGAATTGGTCCCTGGATGCAATAAGATCTCAGGTACAGCTCTAGTGTTGGATGAAATCATCAACCATGTACAATCACTGCAGCGTCAAGTGGAGTTCTTGTCAATGAGGCTTGCAGCAGTTAACCCCAGAGTTGATTTCAACATTGATAGCATATTGGCTGGAGAAAACGAACCTGTACTCGAAAGCAACTTTCCGACCATGGTTACGCCATTGATGTGGCCAGAAATCCCGCTCAGTGGAAACAGACAACAATATCAACCGCAATGGCATTTCGATGCAGCAGTTAACCAGCAAGCCTGGGCGAGGGATGAACATAATCATCATAATTTCAGCACTCCTGAAAACTCTCTTTTAAGTTATGACTCTTCAGCAAATTCAGGTATAGTTATCTCACTAGCTTTTTTTGTTTTGCTTTGCTTTGTTTTCATCTCTGCACTCAAATCAATTGAAGATGGAGCTGTGAAGGCAAAACATTATATTTTACTTGTAGCTACTAGTGTATATAGCCAAATATATAATAGTAATAGCAGTTAG 1239 47.13 MEIKVGTVGGSSPIGRQSDDTGLESLQFCEEIQGLMTIPAENASSFTALLELPATQALELLHSPDSDGGAAAAVVNDDSVHHRIKDVPKPYFSAFNCNLTFPTNSALIERAAKFSVLAEEHSPETTSTVPLNSSVNLEKVKNEPTTETDSNPNHLQTLISDPMVENNTNQRSAKRKEREKKGKGSSKKSKNESNEDAEKLPYVHVRARRGQATDSHSLAERARREKINARMKLLQELVPGCNKISGTALVLDEIINHVQSLQRQVEFLSMRLAAVNPRVDFNIDSILAGENEPVLESNFPTMVTPLMWPEIPLSGNRQQYQPQWHFDAAVNQQAWARDEHNHHNFSTPENSLLSYDSSANSGIVISLAFFVLLCFVFISALKSIEDGAVKAKHYILLVATSVYSQIYNSNSS 412
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 8040838 8046161 + Maker00011173 Lcy5g0651 632466
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy5g0651 412 Coils Coil 251 271 - -
Lcy5g0651 412 Gene3D - 208 281 IPR036638 GO:0046983(InterPro)
Lcy5g0651 412 MobiDBLite consensus disorder prediction 184 220 - -
Lcy5g0651 412 MobiDBLite consensus disorder prediction 120 220 - -
Lcy5g0651 412 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 108 327 IPR024097 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(InterPro)
Lcy5g0651 412 CDD bHLH_AtBPE_like 201 286 - -
Lcy5g0651 412 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 209 280 IPR036638 GO:0046983(InterPro)
Lcy5g0651 412 SMART finulus 217 267 IPR011598 GO:0046983(InterPro)
Lcy5g0651 412 MobiDBLite consensus disorder prediction 120 169 - -
Lcy5g0651 412 FunFam transcription factor bHLH48-like isoform X1 208 280 - -
Lcy5g0651 412 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 211 261 IPR011598 GO:0046983(InterPro)
Lcy5g0651 412 Pfam Helix-loop-helix DNA-binding domain 215 262 IPR011598 GO:0046983(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy5g0651 Lcy-Chr5:8040838 Lcy7g0378 Lcy-Chr7:3190844 2.57E-37 dispersed
Lcy5g0651 Lcy-Chr5:8040838 Lcy3g1006 Lcy-Chr3:33992068 1.68E-39 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
20085 None None None None Lcy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy5g0651 - - - 0.0