Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lcy5g0658 | ATGGATGACCCTTCCACTAACTTCTTCACAAATCTCTTCAAATTCAACTCTCCCACTCCCTCTTCCTCACACCCTCCGCCGCCGCCTTCTCCGCCGCTCCGGCAGGCGCTCCCCCTCCTGAGGCTGAGCCCCAGCAGATCATCTCATGATCACGAGCAGCCCTCGGCCATGGAAATCGACGACGGTGACGAGGACGTTTCGGTGACTGTTGCACTCCACATAGGGCTTCCAAGCCCTAGTGCCTCAGAAATGGCGAGCCTTTTGGTTTCGAACAATGAAAATGAAGAAGATTTAGAATTGGAAGATCAAGATTTAGAGGTTGAAGATGAAGAAGTTGCAATTTCTGGATTCTCTTTGAGTAGTAGACTCAACAAAGGACAGTATTGGATCCCAACTCCTTCACAAATCCTCATTGGCCCTACTCAGTTCTCTTGTCCTGTTTGTTACAAGACCTTCAATAGATATAACAACATGCAGATGCACATGTGGGGGCATGGGTCACAATACAGGCGAGGTCCAGAGTCGTTAAGAGGCACACAGCCAACGGGCATGCTGAGGCTGCCATGCTATTGCTGCTCGCCAGGGTGCCGCAACAACATCGACCATCCAAGAGCCAAGCCCTTGAAGGACTTCAGAACTCTTCAAACTCACTACAAGCGCAAGCATGGAATCAAGCCCTTCATGTGTAGAAAATGTGGCAAAGCCTTTGCCGTCAGAGGCGACTGGAGAACTCATGAGAAGAATTGTGGCAAGCTTTGGTATTGCATTTGTGGCTCTGATTTCAAGCACAAGAGATCCCTCAAAGACCACATCAAGGCCTTTGGCAATGGCCATGCTGCTTATAATAATAGTATCAGTAACCCCGATCATCATCATCATCATCGTCATCATCATCAACTTCACGGCTTTGATGAAGAGGACGAGCCTGCTTATTCTGAAGTTGAGCAAGATCATGATTGA | 960 | 48.54 | MDDPSTNFFTNLFKFNSPTPSSSHPPPPPSPPLRQALPLLRLSPSRSSHDHEQPSAMEIDDGDEDVSVTVALHIGLPSPSASEMASLLVSNNENEEDLELEDQDLEVEDEEVAISGFSLSSRLNKGQYWIPTPSQILIGPTQFSCPVCYKTFNRYNNMQMHMWGHGSQYRRGPESLRGTQPTGMLRLPCYCCSPGCRNNIDHPRAKPLKDFRTLQTHYKRKHGIKPFMCRKCGKAFAVRGDWRTHEKNCGKLWYCICGSDFKHKRSLKDHIKAFGNGHAAYNNSISNPDHHHHHRHHHQLHGFDEEDEPAYSEVEQDHD | 319 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
5 | 8156638 | 8159466 | + | Maker00011205 | Lcy5g0658 | 632473 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lcy5g0658 | 319 | PANTHER | ZINC FINGER PROTEIN WIP2 | 15 | 304 | IPR043584 | GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0010468(InterPro)|GO:0010468(PANTHER)|GO:0048856(PANTHER) | |
Lcy5g0658 | 319 | SMART | c2h2final6 | 227 | 247 | IPR013087 | - | |
Lcy5g0658 | 319 | SMART | c2h2final6 | 143 | 165 | IPR013087 | - | |
Lcy5g0658 | 319 | MobiDBLite | consensus disorder prediction | 282 | 319 | - | - | |
Lcy5g0658 | 319 | MobiDBLite | consensus disorder prediction | 299 | 319 | - | - | |
Lcy5g0658 | 319 | Pfam | BIRD-IDD transcription factor, third C2HC zinc finger | 226 | 250 | - | - | |
Lcy5g0658 | 319 | SUPERFAMILY | beta-beta-alpha zinc fingers | 139 | 165 | IPR036236 | - | |
Lcy5g0658 | 319 | MobiDBLite | consensus disorder prediction | 20 | 35 | - | - | |
Lcy5g0658 | 319 | SUPERFAMILY | beta-beta-alpha zinc fingers | 209 | 247 | IPR036236 | - | |
Lcy5g0658 | 319 | MobiDBLite | consensus disorder prediction | 1 | 19 | - | - | |
Lcy5g0658 | 319 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 143 | 170 | IPR013087 | - | |
Lcy5g0658 | 319 | Gene3D | Classic Zinc Finger | 142 | 165 | - | - | |
Lcy5g0658 | 319 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 227 | 247 | IPR013087 | - | |
Lcy5g0658 | 319 | FunFam | zinc finger protein WIP2-like | 142 | 165 | - | - | |
Lcy5g0658 | 319 | Gene3D | Classic Zinc Finger | 205 | 282 | - | - | |
Lcy5g0658 | 319 | MobiDBLite | consensus disorder prediction | 1 | 60 | - | - | |
Lcy5g0658 | 319 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 145 | 165 | IPR013087 | - | |
Lcy5g0658 | 319 | FunFam | Zinc finger protein WIP2 | 196 | 278 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lcy5g0658 | Lcy-Chr5:8156638 | Lcy8g2102 | Lcy-Chr8:47205856 | 3.35E-117 | dispersed | |
Lcy1g2103 | Lcy-Chr1:28576337 | Lcy5g0658 | Lcy-Chr5:8156638 | 3.56E-125 | transposed | |
Lcy3g1915 | Lcy-Chr3:46395653 | Lcy5g0658 | Lcy-Chr5:8156638 | 9.10E-112 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
20086 | None | None | None | None | Lcy | TF |
Pathway information
