Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy5g0658 ATGGATGACCCTTCCACTAACTTCTTCACAAATCTCTTCAAATTCAACTCTCCCACTCCCTCTTCCTCACACCCTCCGCCGCCGCCTTCTCCGCCGCTCCGGCAGGCGCTCCCCCTCCTGAGGCTGAGCCCCAGCAGATCATCTCATGATCACGAGCAGCCCTCGGCCATGGAAATCGACGACGGTGACGAGGACGTTTCGGTGACTGTTGCACTCCACATAGGGCTTCCAAGCCCTAGTGCCTCAGAAATGGCGAGCCTTTTGGTTTCGAACAATGAAAATGAAGAAGATTTAGAATTGGAAGATCAAGATTTAGAGGTTGAAGATGAAGAAGTTGCAATTTCTGGATTCTCTTTGAGTAGTAGACTCAACAAAGGACAGTATTGGATCCCAACTCCTTCACAAATCCTCATTGGCCCTACTCAGTTCTCTTGTCCTGTTTGTTACAAGACCTTCAATAGATATAACAACATGCAGATGCACATGTGGGGGCATGGGTCACAATACAGGCGAGGTCCAGAGTCGTTAAGAGGCACACAGCCAACGGGCATGCTGAGGCTGCCATGCTATTGCTGCTCGCCAGGGTGCCGCAACAACATCGACCATCCAAGAGCCAAGCCCTTGAAGGACTTCAGAACTCTTCAAACTCACTACAAGCGCAAGCATGGAATCAAGCCCTTCATGTGTAGAAAATGTGGCAAAGCCTTTGCCGTCAGAGGCGACTGGAGAACTCATGAGAAGAATTGTGGCAAGCTTTGGTATTGCATTTGTGGCTCTGATTTCAAGCACAAGAGATCCCTCAAAGACCACATCAAGGCCTTTGGCAATGGCCATGCTGCTTATAATAATAGTATCAGTAACCCCGATCATCATCATCATCATCGTCATCATCATCAACTTCACGGCTTTGATGAAGAGGACGAGCCTGCTTATTCTGAAGTTGAGCAAGATCATGATTGA 960 48.54 MDDPSTNFFTNLFKFNSPTPSSSHPPPPPSPPLRQALPLLRLSPSRSSHDHEQPSAMEIDDGDEDVSVTVALHIGLPSPSASEMASLLVSNNENEEDLELEDQDLEVEDEEVAISGFSLSSRLNKGQYWIPTPSQILIGPTQFSCPVCYKTFNRYNNMQMHMWGHGSQYRRGPESLRGTQPTGMLRLPCYCCSPGCRNNIDHPRAKPLKDFRTLQTHYKRKHGIKPFMCRKCGKAFAVRGDWRTHEKNCGKLWYCICGSDFKHKRSLKDHIKAFGNGHAAYNNSISNPDHHHHHRHHHQLHGFDEEDEPAYSEVEQDHD 319
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 8156638 8159466 + Maker00011205 Lcy5g0658 632473
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy5g0658 319 PANTHER ZINC FINGER PROTEIN WIP2 15 304 IPR043584 GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0010468(InterPro)|GO:0010468(PANTHER)|GO:0048856(PANTHER)
Lcy5g0658 319 SMART c2h2final6 227 247 IPR013087 -
Lcy5g0658 319 SMART c2h2final6 143 165 IPR013087 -
Lcy5g0658 319 MobiDBLite consensus disorder prediction 282 319 - -
Lcy5g0658 319 MobiDBLite consensus disorder prediction 299 319 - -
Lcy5g0658 319 Pfam BIRD-IDD transcription factor, third C2HC zinc finger 226 250 - -
Lcy5g0658 319 SUPERFAMILY beta-beta-alpha zinc fingers 139 165 IPR036236 -
Lcy5g0658 319 MobiDBLite consensus disorder prediction 20 35 - -
Lcy5g0658 319 SUPERFAMILY beta-beta-alpha zinc fingers 209 247 IPR036236 -
Lcy5g0658 319 MobiDBLite consensus disorder prediction 1 19 - -
Lcy5g0658 319 ProSiteProfiles Zinc finger C2H2 type domain profile. 143 170 IPR013087 -
Lcy5g0658 319 Gene3D Classic Zinc Finger 142 165 - -
Lcy5g0658 319 ProSiteProfiles Zinc finger C2H2 type domain profile. 227 247 IPR013087 -
Lcy5g0658 319 FunFam zinc finger protein WIP2-like 142 165 - -
Lcy5g0658 319 Gene3D Classic Zinc Finger 205 282 - -
Lcy5g0658 319 MobiDBLite consensus disorder prediction 1 60 - -
Lcy5g0658 319 ProSitePatterns Zinc finger C2H2 type domain signature. 145 165 IPR013087 -
Lcy5g0658 319 FunFam Zinc finger protein WIP2 196 278 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy5g0658 Lcy-Chr5:8156638 Lcy8g2102 Lcy-Chr8:47205856 3.35E-117 dispersed
Lcy1g2103 Lcy-Chr1:28576337 Lcy5g0658 Lcy-Chr5:8156638 3.56E-125 transposed
Lcy3g1915 Lcy-Chr3:46395653 Lcy5g0658 Lcy-Chr5:8156638 9.10E-112 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
20086 None None None None Lcy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy5g0658 - - - 0.0