Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy5g0682 ATGAATTACTTGACTGTTGAAACAGAAGATGCCTTTTCCAGTTTGCTCGAGCTTGCTGCAAATGATGACATCGATGCCTTTAAGAGATCAATTGAGCGTGACCCTTCTGGTATTGATGAGATTGGTTTGTGGTATGGCCGATTGCGAGGGTCGAAGCAGATGACCAATGAGCAGAGAACTCCTTTAATGGTTGCTGCCACTTATGGTAGCATTGAGGTTCTGAAGCTTATTATTTCTCTTTCTTGTGCTGATGTAAACCGCGCTGTTGGTCTTGACAGAAGCACTGCCCTTCATTGTGCAGCCTCAGGTGGGAATGCAAATGCTGTAGAAATTGTAAAGCGGCTCTTAGCTGCTGGTGCTGATCCAAATATGGTTGATGGGAATGGACATCGACCTGTCGATGTGATTGTTACCCCCCTAAGGCACGCAGAGTTTAAGTCAATCCTTACAGAACTTCTTAAAACAAATGGTTTTTCTGGTGAAGGAAATCTTGATGTTTCAACAGGTGCTAGAAATTCGCATTCTCCTCCCCTTTTGTCTCCTCTGAATGTCCCTTCATCTGCATCGGAGTTGGTTTCTTCTCCAACAAAGTCGAAACTAAATGATTTTCCCATGTATTCTGCATCTGAGAAGAAAGAATACCCCGTTGATCTCTCTCTTCCAGACATCAAGAACAGTATCTATTCGACTGATGAATTCCGTATGTATTCATTCAAGGTTCGACCCTGCTCACGGGCTTACTCTCATGATTGGACTGAGTGTCCCTTTGTCCATCCTGGAGAAAATGCTAGGAGGAGGGATCCAAGAAAGTTTCATTATAGCTGTGTACCCTGTCCTGACTTTCGGAAGGGTGCTTGCAGACGAGGAGATATGTGTGAATATGCTCACGGGGTGTTTGAGTGCTGGTTGCACCCAGCACAATATCGGACCCGCCTTTGCAAAGATGGCACAAATTGCTCAAGGAGAGTCTGCTTCTTTGCACATATGACTGAGGAACTGCGACCATTGTATGTTTCAACTGGCTCTGCTGTTCCTTCACCGCGTTCTTGTACTTCTGGGGCTTCTGCTATGGATTATAATACAGTCATGAACCTTCTACCTGGTTCTCCATCTTCAGTCCCTGTGATGTCTCCATCACCGTTCACTCCTCCGATGTCCCCCTCTGCCAATGGCATGTCCCACTCGTCTGTGGCTTGGCCCCAACCGAATGTACCTGCCTTACATCTTCCAGGAAGCAATATTCAGTCTAGCCGCCTAAGATCTTCTTTGAGTGCAAGAGACATTCCTGTGGAGGACTTTGATTATCTGAGTGATTTTGATCTGCAACAACAGCAGCTCCTTAATGACTTGAATTGTCTTTCTCAGCCACCATTAAGTTCAAATTCATTGAGCCGTTCTGGTCGGCTGAAAACTCTGACACCTTCGAATCTCGATGATCTCTTCTCTGCTGAGAGTTCATCTCCCAGATACTCTGATCAAGCTTTGGCTTCGGCTGTTTTCTCCCCTACACACAAATCAGCTGTTATCAATCAATTTCAGCAGCAACAGAATATGTTGTCGCCAATCAATACAAATTTCTCTCCTAAAAATGTTGATCACTCTCTATTGCAGGCCTCTTTTGGTGTTCCATCATCTGGGAGGATGTCTCCACGAAATTTAGAACCCATCTCTCCGATGGGCTCACGGTTGTCCATGTTAGCTCAAAGAGAGAAACAGCAACAATTTCGCAGCCTAAGCTCGCGTGAACTCGGTGCAAATTCTGCTTCAATTGTTGGTTCCCCTGCAAATTCTTGGTCTAAATGGGGGCATTCTAATGGGAGACCTGATTGGGCAGTCAATGCAGATGAAATGGGTAAACTTCGGCGATCATCATCGTTTGAGCTCGGGAACAATGGAGAAGAGCCAGATTTATCATGGGTTCAGTCACTTGTAAAAGAATCTCCAACTGAGATAAAAGAAAAGCAGGCTCATCCCAACTCGAGTGGAGATAGTTTTGTATCTTCTGGTGAGAGTTCTAACATGAACTCCCAAATGGAGTCAGTTGATCATGCTGCATTGGGAGCATGGCTTGAACAAATGCAGCTCGATCATCTCGTCGCGCAACAAAACTGA 2112 45.27 MNYLTVETEDAFSSLLELAANDDIDAFKRSIERDPSGIDEIGLWYGRLRGSKQMTNEQRTPLMVAATYGSIEVLKLIISLSCADVNRAVGLDRSTALHCAASGGNANAVEIVKRLLAAGADPNMVDGNGHRPVDVIVTPLRHAEFKSILTELLKTNGFSGEGNLDVSTGARNSHSPPLLSPLNVPSSASELVSSPTKSKLNDFPMYSASEKKEYPVDLSLPDIKNSIYSTDEFRMYSFKVRPCSRAYSHDWTECPFVHPGENARRRDPRKFHYSCVPCPDFRKGACRRGDMCEYAHGVFECWLHPAQYRTRLCKDGTNCSRRVCFFAHMTEELRPLYVSTGSAVPSPRSCTSGASAMDYNTVMNLLPGSPSSVPVMSPSPFTPPMSPSANGMSHSSVAWPQPNVPALHLPGSNIQSSRLRSSLSARDIPVEDFDYLSDFDLQQQQLLNDLNCLSQPPLSSNSLSRSGRLKTLTPSNLDDLFSAESSSPRYSDQALASAVFSPTHKSAVINQFQQQQNMLSPINTNFSPKNVDHSLLQASFGVPSSGRMSPRNLEPISPMGSRLSMLAQREKQQQFRSLSSRELGANSASIVGSPANSWSKWGHSNGRPDWAVNADEMGKLRRSSSFELGNNGEEPDLSWVQSLVKESPTEIKEKQAHPNSSGDSFVSSGESSNMNSQMESVDHAALGAWLEQMQLDHLVAQQN 703
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 8751751 8753862 - Maker00010558 Lcy5g0682 632497
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy5g0682 703 MobiDBLite consensus disorder prediction 166 196 - -
Lcy5g0682 703 Pfam Ankyrin repeats (3 copies) 54 126 IPR002110 GO:0005515(InterPro)
Lcy5g0682 703 ProSiteProfiles Ankyrin repeat profile. 92 127 IPR002110 GO:0005515(InterPro)
Lcy5g0682 703 SMART c3hfinal6 307 330 IPR000571 GO:0046872(InterPro)
Lcy5g0682 703 SMART c3hfinal6 272 298 IPR000571 GO:0046872(InterPro)
Lcy5g0682 703 ProSiteProfiles Zinc finger C3H1-type profile. 277 299 IPR000571 GO:0046872(InterPro)
Lcy5g0682 703 MobiDBLite consensus disorder prediction 658 679 - -
Lcy5g0682 703 ProSiteProfiles Ankyrin repeat region circular profile. 92 126 - -
Lcy5g0682 703 Gene3D - 8 157 IPR036770 -
Lcy5g0682 703 FunFam Zinc finger CCCH domain-containing protein 66 230 298 - -
Lcy5g0682 703 Gene3D - 274 335 - -
Lcy5g0682 703 MobiDBLite consensus disorder prediction 647 679 - -
Lcy5g0682 703 SUPERFAMILY Ankyrin repeat 7 138 IPR036770 -
Lcy5g0682 703 SMART ANK_2a 92 124 IPR002110 GO:0005515(InterPro)
Lcy5g0682 703 SMART ANK_2a 57 87 IPR002110 GO:0005515(InterPro)
Lcy5g0682 703 PANTHER UNKEMPT FAMILY MEMBER 51 648 IPR045234 -
Lcy5g0682 703 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 276 297 IPR000571 GO:0046872(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy12g0450 Lcy-Chr12:5462034 Lcy5g0682 Lcy-Chr5:8751751 5.37E-298 dispersed
Lcy2g0889 Lcy-Chr2:8141815 Lcy5g0682 Lcy-Chr5:8751751 9.05E-58 dispersed
Lcy5g0682 Lcy-Chr5:8751751 Lcy7g0994 Lcy-Chr7:10389301 1.23E-154 dispersed
Lcy5g0682 Lcy-Chr5:8751751 Lcy8g1738 Lcy-Chr8:43860671 7.16E-160 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
20089 None None None None Lcy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy5g0682 - - - 0.0